Diff of the two buildlogs: -- --- b1/build.log 2025-09-26 18:08:02.462767696 +0000 +++ b2/build.log 2025-09-26 18:15:01.635309461 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 29 12:27:09 -12 2026 -I: pbuilder-time-stamp: 1793320029 +I: Current time: Sat Sep 27 08:08:24 +14 2025 +I: pbuilder-time-stamp: 1758910104 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -32,53 +32,85 @@ dpkg-source: info: applying omit_blat_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3782821/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 26 18:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c2c8b09d662446bbbc7064501a80832c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3782821' - PS1='# ' - PS2='> ' + INVOCATION_ID=f50f666fd4284030862aa6286544eb36 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2395756 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dSdoTQLs/pbuilderrc_2Vkm --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dSdoTQLs/b1 --logfile b1/build.log igv_2.18.5+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dSdoTQLs/pbuilderrc_tQEN --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dSdoTQLs/b2 --logfile b2/build.log igv_2.18.5+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3782821/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -645,7 +677,7 @@ Get: 469 http://deb.debian.org/debian forky/main arm64 libprotobuf-java all 3.21.12-13 [1268 kB] Get: 470 http://deb.debian.org/debian forky/main arm64 libswing-layout-java all 1.0.4-5 [44.1 kB] Get: 471 http://deb.debian.org/debian forky/main arm64 openjfx arm64 11.0.11+1-7 [7036 B] -Fetched 451 MB in 4s (101 MB/s) +Fetched 451 MB in 7s (62.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -2187,8 +2219,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 30 00:28:36 UTC 2026. -Universal Time is now: Fri Oct 30 00:28:36 UTC 2026. +Local time is now: Fri Sep 26 18:11:20 UTC 2025. +Universal Time is now: Fri Sep 26 18:11:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -2789,7 +2821,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/igv-2.18.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igv_2.18.5+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/igv-2.18.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../igv_2.18.5+dfsg-1_source.changes dpkg-buildpackage: info: source package igv dpkg-buildpackage: info: source version 2.18.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2804,8 +2840,8 @@ rm -Rf /build/reproducible-path/igv-2.18.5\+dfsg/.gradle /build/reproducible-path/igv-2.18.5\+dfsg/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle -Duplicate specification "u=s" for option "u" -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" +Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/igv-2.18.5+dfsg' if [ -e src/main/resources/log4j.xml ] ; then rm src/main/resources/log4j.xml ; fi @@ -2832,79 +2868,79 @@ mkdir ../../src/main/resources-icons && \ mv *.png ../../src/main/resources-icons/ -** (process:3856447): WARNING **: 12:29:08.883: Unable to create profile directory (Permission denied) (13) +** (process:2434235): WARNING **: 08:12:46.062: Unable to create profile directory (Permission denied) (13) -** (inkscape:3856447): WARNING **: 12:29:08.896: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. -** Message: 12:29:08.897: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 12:29:08.897: Inkscape will run with default settings, and new settings will not be saved. +** (inkscape:2434235): WARNING **: 08:12:46.100: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. +** Message: 08:12:46.108: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 08:12:46.108: Inkscape will run with default settings, and new settings will not be saved. -** (inkscape:3856447): WARNING **: 12:29:08.998: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2434235): WARNING **: 08:12:46.334: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3856447): WARNING **: 12:29:08.998: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2434235): WARNING **: 08:12:46.339: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3856447): Gtk-CRITICAL **: 12:29:09.033: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2434235): Gtk-CRITICAL **: 08:12:46.421: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3856447): WARNING **: 12:29:09.033: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2434235): WARNING **: 08:12:46.424: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3856635): WARNING **: 12:29:09.168: Unable to create profile directory (Permission denied) (13) +** (process:2434242): WARNING **: 08:12:46.660: Unable to create profile directory (Permission denied) (13) -** (inkscape:3856635): WARNING **: 12:29:09.174: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. -** Message: 12:29:09.186: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 12:29:09.186: Inkscape will run with default settings, and new settings will not be saved. +** (inkscape:2434242): WARNING **: 08:12:46.671: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. +** Message: 08:12:46.676: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 08:12:46.676: Inkscape will run with default settings, and new settings will not be saved. -** (inkscape:3856635): WARNING **: 12:29:09.373: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2434242): WARNING **: 08:12:46.894: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3856635): WARNING **: 12:29:09.373: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2434242): WARNING **: 08:12:46.899: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3856635): Gtk-CRITICAL **: 12:29:09.410: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2434242): Gtk-CRITICAL **: 08:12:46.973: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3856635): WARNING **: 12:29:09.410: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2434242): WARNING **: 08:12:46.980: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3856839): WARNING **: 12:29:09.593: Unable to create profile directory (Permission denied) (13) +** (process:2434251): WARNING **: 08:12:47.187: Unable to create profile directory (Permission denied) (13) -** (inkscape:3856839): WARNING **: 12:29:09.610: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. -** Message: 12:29:09.619: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 12:29:09.619: Inkscape will run with default settings, and new settings will not be saved. +** (inkscape:2434251): WARNING **: 08:12:47.202: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. +** Message: 08:12:47.208: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 08:12:47.208: Inkscape will run with default settings, and new settings will not be saved. -** (inkscape:3856839): WARNING **: 12:29:09.800: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2434251): WARNING **: 08:12:47.453: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3856839): WARNING **: 12:29:09.801: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2434251): WARNING **: 08:12:47.453: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3856839): Gtk-CRITICAL **: 12:29:09.837: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2434251): Gtk-CRITICAL **: 08:12:47.538: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3856839): WARNING **: 12:29:09.838: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2434251): WARNING **: 08:12:47.538: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3857081): WARNING **: 12:29:10.034: Unable to create profile directory (Permission denied) (13) +** (process:2434260): WARNING **: 08:12:47.751: Unable to create profile directory (Permission denied) (13) -** (inkscape:3857081): WARNING **: 12:29:10.044: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. -** Message: 12:29:10.050: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 12:29:10.051: Inkscape will run with default settings, and new settings will not be saved. +** (inkscape:2434260): WARNING **: 08:12:47.765: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. +** Message: 08:12:47.770: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 08:12:47.771: Inkscape will run with default settings, and new settings will not be saved. -** (inkscape:3857081): WARNING **: 12:29:10.238: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2434260): WARNING **: 08:12:47.992: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3857081): WARNING **: 12:29:10.242: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2434260): WARNING **: 08:12:47.993: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3857081): Gtk-CRITICAL **: 12:29:10.301: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2434260): Gtk-CRITICAL **: 08:12:48.065: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3857081): WARNING **: 12:29:10.301: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2434260): WARNING **: 08:12:48.065: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3857311): WARNING **: 12:29:10.476: Unable to create profile directory (Permission denied) (13) +** (process:2434267): WARNING **: 08:12:48.296: Unable to create profile directory (Permission denied) (13) -** (inkscape:3857311): WARNING **: 12:29:10.490: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. -** Message: 12:29:10.495: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 12:29:10.495: Inkscape will run with default settings, and new settings will not be saved. +** (inkscape:2434267): WARNING **: 08:12:48.306: Failed to wrap object of type 'PangoFT2FontMap'. Hint: this error is commonly caused by failing to call a library init() function. +** Message: 08:12:48.312: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 08:12:48.313: Inkscape will run with default settings, and new settings will not be saved. -** (inkscape:3857311): WARNING **: 12:29:10.611: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2434267): WARNING **: 08:12:48.422: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3857311): WARNING **: 12:29:10.612: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2434267): WARNING **: 08:12:48.423: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3857311): Gtk-CRITICAL **: 12:29:10.641: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2434267): Gtk-CRITICAL **: 08:12:48.454: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3857311): WARNING **: 12:29:10.641: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2434267): WARNING **: 08:12:48.462: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. make[1]: Leaving directory '/build/reproducible-path/igv-2.18.5+dfsg' jh_linkjars -O--buildsystem=gradle -Duplicate specification "u=s" for option "u" Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ @@ -2916,18 +2952,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.894 secs. -The client will now receive all logging from the daemon (pid: 3858545). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-3858545.out.log +An attempt to start the daemon took 2.593 secs. +The client will now receive all logging from the daemon (pid: 2434438). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-2434438.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6931ab8 -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6931ab8 -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5e503423 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2c79332 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2c79332 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3242c7a1 Starting Build Compiling initialization script '/build/reproducible-path/igv-2.18.5+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a92f56b +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a99bf06 Compiling initialization script '/build/reproducible-path/igv-2.18.5+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2944,15 +2980,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@60c1a193 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@322596c5 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5e503423 -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@2056bea3 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@29988f19 -:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3242c7a1 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@14edf605 +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@23648b6b +:compileJava (Thread[#50,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.012 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f137ea5 +Putting task artifact state for task ':compileJava' into context took 0.029 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@34246 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3053,7 +3089,7 @@ at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':compileJava' took 6.554 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 10.229 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found @@ -3063,32 +3099,32 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 31.024 secs. -:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 48.281 secs. +:processResources (Thread[#55,Task worker for ':' Thread 6,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.273 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.643 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.63 secs. -:classes (Thread[#36,Daemon worker,5,main]) started. +:processResources (Thread[#55,Task worker for ':' Thread 6,5,main]) completed. Took 1.14 secs. +:classes (Thread[#55,Task worker for ':' Thread 6,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#36,Daemon worker,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#36,Daemon worker,5,main]) started. +:classes (Thread[#55,Task worker for ':' Thread 6,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#55,Task worker for ':' Thread 6,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/igv-2.18.5+dfsg/build/debian/igv.pom -:debianMavenPom (Thread[#36,Daemon worker,5,main]) completed. Took 0.25 secs. -:jar (Thread[#36,Daemon worker,5,main]) started. +:debianMavenPom (Thread[#55,Task worker for ':' Thread 6,5,main]) completed. Took 0.196 secs. +:jar (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.119 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.07 secs. It is not up-to-date because: No history is available. -:jar (Thread[#36,Daemon worker,5,main]) completed. Took 1.319 secs. +:jar (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.922 secs. -BUILD SUCCESSFUL in 46s +BUILD SUCCESSFUL in 1m 6s 4 actionable tasks: 4 executed jh_build -O--buildsystem=gradle dh_auto_test -O--buildsystem=gradle @@ -3102,17 +3138,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.045 secs. -The client will now receive all logging from the daemon (pid: 3883227). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-3883227.out.log +An attempt to start the daemon took 3.106 secs. +The client will now receive all logging from the daemon (pid: 2443071). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-2443071.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@496f7124 -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@496f7124 -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@15096866 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@678ea0a4 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@678ea0a4 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@365d649e Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@e99dbf8 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@333eb4fc Settings evaluated using settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/igv-2.18.5+dfsg/build.gradle'. Included projects: [root project 'igv'] @@ -3124,15 +3160,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@513687b6 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@42dc0ec1 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@15096866 -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@420fe5bd -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13ee6a6 -:compileJava (Thread[#50,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@365d649e +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c32676e +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@466db684 +:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.01 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@403ae594 +Putting task artifact state for task ':compileJava' into context took 0.015 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@75d96c9b Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3185,21 +3221,21 @@ Passing through xml-apis:xml-apis-1.4:jar:debian file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Skipping task ':compileJava' as it is up-to-date (took 2.618 secs). +Skipping task ':compileJava' as it is up-to-date (took 2.876 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 2.692 secs. -:processResources (Thread[#50,Task worker for ':',5,main]) started. +:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 2.977 secs. +:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.158 secs). +Skipping task ':processResources' as it is up-to-date (took 0.221 secs). :processResources UP-TO-DATE -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.168 secs. -:classes (Thread[#50,Task worker for ':',5,main]) started. +:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.23 secs. +:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#50,Task worker for ':',5,main]) started. +:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. @@ -3599,7 +3635,7 @@ Ignoring org.glassfish.jersey.core:jersey-common:jar:2.34 file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':compileTestJava' took 3.308 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 2.587 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found @@ -3609,18 +3645,18 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[#50,Task worker for ':',5,main]) completed. Took 12.321 secs. -:processTestResources (Thread[#36,Daemon worker,5,main]) started. +:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 13.425 secs. +:processTestResources (Thread[#60,Task worker for ':' Thread 11,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#36,Daemon worker,5,main]) completed. Took 0.01 secs. -:testClasses (Thread[#36,Daemon worker,5,main]) started. +:processTestResources (Thread[#60,Task worker for ':' Thread 11,5,main]) completed. Took 0.011 secs. +:testClasses (Thread[#60,Task worker for ':' Thread 11,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#36,Daemon worker,5,main]) completed. Took 0.0 secs. +:testClasses (Thread[#60,Task worker for ':' Thread 11,5,main]) completed. Took 0.0 secs. :test (Thread[#59,Task worker for ':' Thread 10,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. @@ -3631,64 +3667,56 @@ Passing through org.opentest4j:opentest4j:jar:debian Passing through org.junit.platform:junit-platform-commons:jar:debian file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':test' took 1.662 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 1.648 secs. It is not up-to-date because: No history is available. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found +Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath9585995963244035141txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath12019896124440663949txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath519354301959130381txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath2092181451695670740txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath11994300079741175776txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath4270017429588048305txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' -Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath8697547951988317072txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath4271070099733507182txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath12937465095942579991txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' -Successfully started process 'Gradle Test Executor 2' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath7517803791500722591txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath14877026382658911575txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.9-ea+5-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.9-ea -Djava.version.date=2025-10-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.9-ea+5-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.12.48+deb13-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath15428749007144364479txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' +Successfully started process 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 5' Successfully started process 'Gradle Test Executor 6' +Successfully started process 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 4' +Gradle Test Executor 5 started executing tests. Gradle Test Executor 6 started executing tests. +Gradle Test Executor 1 started executing tests. Gradle Test Executor 2 started executing tests. Gradle Test Executor 4 started executing tests. -Gradle Test Executor 1 started executing tests. -Gradle Test Executor 5 started executing tests. Gradle Test Executor 3 started executing tests. +org.broad.igv.batch.CommandExecutorTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Oct 29,2026 12:30] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float - SEVERE [Oct 29,2026 12:30] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float - SEVERE [Oct 29,2026 12:30] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Sep 27,2025 08:14] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Sep 27,2025 08:14] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float + SEVERE [Sep 27,2025 08:14] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED -org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED - -org.broad.igv.batch.CommandExecutorTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED +org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED + org.broad.igv.sam.mods.BaseModificationsTest > testOrientBotFwd STANDARD_OUT 115 -115 -90 -64 -org.broad.igv.batch.CommandListenerTest STANDARD_ERROR - Oct 29, 2026 12:30:29 PM java.util.prefs.FileSystemPreferences$1 run - INFO: Created user preferences directory. - -org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED - -org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED - org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 0 0 0 1 1 1 @@ -3757,6 +3785,10 @@ 64 64 64 65 65 65 66 66 66 + +org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED + +org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 67 67 67 68 68 68 69 69 69 @@ -3771,10 +3803,6 @@ 78 78 78 79 79 79 80 80 80 - -org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED - -org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 81 81 81 82 82 82 83 83 83 @@ -3951,26 +3979,39 @@ 254 -2 254 255 -1 255 +org.broad.igv.batch.CommandListenerTest STANDARD_ERROR + Sep 27, 2025 8:14:35 AM java.util.prefs.FileSystemPreferences$1 run + INFO: Created user preferences directory. + org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED -org.broad.igv.batch.CommandListenerTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED +org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED -org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED -org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED + +org.broad.igv.batch.CommandListenerTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED + +org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED -org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED +org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED + +org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED @@ -3983,26 +4024,33 @@ org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED - org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED -org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED -org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED -org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED + +org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED + +org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED + +org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT + dir/test.txt org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED +Gradle Test Executor 5 finished executing tests. + +org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT + IntArrayList time: 0 org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED @@ -4018,26 +4066,11 @@ org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED - -org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT - dir/test.txt -Gradle Test Executor 4 finished executing tests. - -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT bam -org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT - IntArrayList time: 0 - org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED @@ -4045,12 +4078,18 @@ org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED -Gradle Test Executor 1 finished executing tests. org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED +Gradle Test Executor 1 finished executing tests. +Gradle Test Executor 4 finished executing tests. + +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test org.broad.igv.ucsc.bb.BBFileTest > testChromTree SKIPPED -Gradle Test Executor 5 finished executing tests. + +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort: 490 org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED @@ -4060,8 +4099,7 @@ Gradle Test Executor 3 finished executing tests. org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort: 637 - Random sort (reversed): 497 + Random sort (reversed): 402 org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED @@ -4078,24 +4116,24 @@ Gradle Test Executor 2 finished executing tests. org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort (Arrays): 2274 - Sorted sort: 328 - Reverse sorted sort: 277 - Almost sorted sort: 319 + Random sort (Arrays): 1871 + Sorted sort: 113 + Reverse sorted sort: 139 + Almost sorted sort: 177 org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT - IntArrayList time: 207 + IntArrayList time: 108 org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED Gradle Test Executor 6 finished executing tests. -Finished generating test XML results (0.092 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/test-results/test +Finished generating test XML results (0.061 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.162 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/reports/tests/test -:test (Thread[#59,Task worker for ':' Thread 10,5,main]) completed. Took 10.566 secs. +Finished generating test html results (0.17 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/reports/tests/test +:test (Thread[#59,Task worker for ':' Thread 10,5,main]) completed. Took 10.045 secs. -BUILD SUCCESSFUL in 37s +BUILD SUCCESSFUL in 44s 4 actionable tasks: 2 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4109,7 +4147,7 @@ make[1]: Leaving directory '/build/reproducible-path/igv-2.18.5+dfsg' dh_install -O--buildsystem=gradle jh_installjavadoc -O--buildsystem=gradle -Duplicate specification "author|A=s" for option "A" +Duplicate specification "A" for option "A" Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=gradle dh_installchangelogs -O--buildsystem=gradle @@ -4121,8 +4159,8 @@ jh_installlibs -O--buildsystem=gradle jh_classpath -O--buildsystem=gradle jh_manifest -O--buildsystem=gradle -Duplicate specification "version|V" for option "V" -Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" +Duplicate specification "V:s" for option "V" jh_exec -O--buildsystem=gradle jh_depends -O--buildsystem=gradle dh_strip_nondeterminism -O--buildsystem=gradle @@ -4141,12 +4179,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2395756/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3782821 and its subdirectories -I: Current time: Thu Oct 29 12:31:01 -12 2026 -I: pbuilder-time-stamp: 1793320261 +I: removing directory /srv/workspace/pbuilder/2395756 and its subdirectories +I: Current time: Sat Sep 27 08:15:00 +14 2025 +I: pbuilder-time-stamp: 1758910500