Diff of the two buildlogs: -- --- b1/build.log 2025-09-13 14:08:01.839292101 +0000 +++ b2/build.log 2025-09-13 14:09:15.307380564 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Sep 13 02:06:53 -12 2025 -I: pbuilder-time-stamp: 1757772413 +I: Current time: Sat Oct 17 10:31:04 +14 2026 +I: pbuilder-time-stamp: 1792182664 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -36,53 +36,85 @@ dpkg-source: info: applying 0001-Build.PL-Seed-random-number-generator-with-SOURCE_DA.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2398291/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 16 20:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='50b5b391838b44bdb035494afefcdafd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2398291' - PS1='# ' - PS2='> ' + INVOCATION_ID=8d9b05bf7f7845f4bfafdba7bac64d70 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=376591 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w0TrOcGT/pbuilderrc_aRo4 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w0TrOcGT/b1 --logfile b1/build.log gbrowse_2.56+dfsg-12.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w0TrOcGT/pbuilderrc_iUcr --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w0TrOcGT/b2 --logfile b2/build.log gbrowse_2.56+dfsg-12.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2398291/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -366,7 +398,7 @@ Get: 197 http://deb.debian.org/debian forky/main arm64 libvm-ec2-perl all 1.28-5 [632 kB] Get: 198 http://deb.debian.org/debian forky/main arm64 rename all 2.02-1 [21.8 kB] Get: 199 http://deb.debian.org/debian forky/main arm64 sqlite3 arm64 3.46.1-8 [378 kB] -Fetched 52.0 MB in 0s (107 MB/s) +Fetched 52.0 MB in 0s (120 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -1028,8 +1060,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Sep 13 14:07:22 UTC 2025. -Universal Time is now: Sat Sep 13 14:07:22 UTC 2025. +Local time is now: Fri Oct 16 20:31:34 UTC 2026. +Universal Time is now: Fri Oct 16 20:31:34 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxml-sax-base-perl (1.09-3) ... @@ -1207,7 +1239,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gbrowse-2.56+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gbrowse_2.56+dfsg-12_source.changes +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gbrowse-2.56+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gbrowse_2.56+dfsg-12_source.changes dpkg-buildpackage: info: source package gbrowse dpkg-buildpackage: info: source version 2.56+dfsg-12 dpkg-buildpackage: info: source distribution unstable @@ -1629,8 +1665,6 @@ Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, line 2. Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, line 2. -cannot remove directory for /tmp/gbrowse_testing/bNP37gS4a8: No such file or directory at /usr/lib/aarch64-linux-gnu/perl-base/File/Temp.pm line 917. -cannot chdir to child for /tmp/gbrowse_testing/2h6xamCjrz: No such file or directory at t/03.render.t line 40. t/03.render.t ............. 1..150 ok 1 @@ -1797,8 +1831,8 @@ Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. -Can't locate object method "png" via package "\x{89}PNG\r\n\32\n\0\0\0\rIHDR\0\0\3z\0\0\0E\4\3\0\0\0î\x{b9}\x{89}\x{ae}\0\0\0\17PLTEõÞ\x{b3}àÿÿ\0ÿÿ\0\0\0ÓÓÓ|ü3C\0\0\0\tpHYs\0"..."\177ÞÛô>0\x{bd}[\x{bf}\x{8d}þ\x{be}<ï\x{9b}é\25\x{bd}+\x{bd}Þy\x{95}\36W\x{ad}ô\x{94}\x{9e}Ò\x{bb}â!áÕEU+=\x{a5}\x{a7}ô\x{ae}xHx"... (perhaps you forgot to load "\x{89}PNG\r\n\32\n\0\0\0\rIHDR\0\0\3z\0\0\0E\4\3\0\0\0î\x{b9}\x{89}\x{ae}\0\0\0\17PLTEõÞ\x{b3}àÿÿ\0ÿÿ\0\0\0ÓÓÓ|ü3C\0\0\0\tpHYs\0"..."\177ÞÛô>0\x{bd}[\x{bf}\x{8d}þ\x{be}<ï\x{9b}é\25\x{bd}+\x{bd}Þy\x{95}\36W\x{ad}ô\x{94}\x{9e}Ò\x{bb}â!áÕEU+=\x{a5}\x{a7}ô\x{ae}xHx"...?) at /build/reproducible-path/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/CachedTrack.pm line 154, <> line 45. Can't locate object method "png" via package "\x{89}PNG\r\n\32\n\0\0\0\rIHDR\0\0\3z\0\0\0E\4\3\0\0\0î\x{b9}\x{89}\x{ae}\0\0\0\17PLTEõÞ\x{b3}àÿÿ\0ÿÿÓÓÓ\0\0\0(âÐç\0\0\0\tpHYs\0"..."-Iî\35\x{ab}wémô\x{f7}é\x{b8}\37V/É]Õk\x{8d}\x{ab}ê\x{95}\x{ac}U=UOÕ;Ã!ÃåÁY\x{ab}zª\x{9e}ªw\x{86}C\x{86}Ë\x{83}\x{b3}VõT=Uï\f"... (perhaps you forgot to load "\x{89}PNG\r\n\32\n\0\0\0\rIHDR\0\0\3z\0\0\0E\4\3\0\0\0î\x{b9}\x{89}\x{ae}\0\0\0\17PLTEõÞ\x{b3}àÿÿ\0ÿÿÓÓÓ\0\0\0(âÐç\0\0\0\tpHYs\0"..."-Iî\35\x{ab}wémô\x{f7}é\x{b8}\37V/É]Õk\x{8d}\x{ab}ê\x{95}\x{ac}U=UOÕ;Ã!ÃåÁY\x{ab}zª\x{9e}ªw\x{86}C\x{86}Ë\x{83}\x{b3}VõT=Uï\f"...?) at /build/reproducible-path/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/CachedTrack.pm line 154, <> line 45. +Can't locate object method "png" via package "\x{89}PNG\r\n\32\n\0\0\0\rIHDR\0\0\3z\0\0\0E\4\3\0\0\0î\x{b9}\x{89}\x{ae}\0\0\0\17PLTEõÞ\x{b3}àÿÿ\0ÿÿ\0\0\0ÓÓÓ|ü3C\0\0\0\tpHYs\0"..."\177ÞÛô>0\x{bd}[\x{bf}\x{8d}þ\x{be}<ï\x{9b}é\25\x{bd}+\x{bd}Þy\x{95}\36W\x{ad}ô\x{94}\x{9e}Ò\x{bb}â!áÕEU+=\x{a5}\x{a7}ô\x{ae}xHx"... (perhaps you forgot to load "\x{89}PNG\r\n\32\n\0\0\0\rIHDR\0\0\3z\0\0\0E\4\3\0\0\0î\x{b9}\x{89}\x{ae}\0\0\0\17PLTEõÞ\x{b3}àÿÿ\0ÿÿ\0\0\0ÓÓÓ|ü3C\0\0\0\tpHYs\0"..."\177ÞÛô>0\x{bd}[\x{bf}\x{8d}þ\x{be}<ï\x{9b}é\25\x{bd}+\x{bd}Þy\x{95}\36W\x{ad}ô\x{94}\x{9e}Ò\x{bb}â!áÕEU+=\x{a5}\x{a7}ô\x{ae}xHx"...?) at /build/reproducible-path/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/CachedTrack.pm line 154, <> line 45. t/04.remoteserver.t ....... 1..43 ok 1 @@ -1936,8 +1970,8 @@ t/08.calign.t ............. 1..6 # Running under perl version 5.040001 for linux -# Current time local: Sat Sep 13 02:07:49 2025 -# Current time GMT: Sat Sep 13 14:07:49 2025 +# Current time local: Sat Oct 17 10:32:04 2026 +# Current time GMT: Fri Oct 16 20:32:04 2026 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1947,7 +1981,7 @@ ok 6 ok All tests successful. -Files=10, Tests=448, 17 wallclock secs ( 0.07 usr 0.02 sys + 10.63 cusr 3.34 csys = 14.06 CPU) +Files=10, Tests=448, 16 wallclock secs ( 0.06 usr 0.02 sys + 9.37 cusr 3.06 csys = 12.51 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' create-stamp debian/debhelper-build-stamp @@ -2884,9 +2918,9 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'gbrowse-data' in '../gbrowse-data_2.56+dfsg-12_all.deb'. -dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.56+dfsg-12_arm64.deb'. dpkg-deb: building package 'gbrowse' in '../gbrowse_2.56+dfsg-12_all.deb'. dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.56+dfsg-12_arm64.deb'. +dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.56+dfsg-12_arm64.deb'. dpkg-genbuildinfo --build=binary -O../gbrowse_2.56+dfsg-12_arm64.buildinfo dpkg-genchanges --build=binary -O../gbrowse_2.56+dfsg-12_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2894,12 +2928,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/376591/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2398291 and its subdirectories -I: Current time: Sat Sep 13 02:08:01 -12 2025 -I: pbuilder-time-stamp: 1757772481 +I: removing directory /srv/workspace/pbuilder/376591 and its subdirectories +I: Current time: Sat Oct 17 10:32:14 +14 2026 +I: pbuilder-time-stamp: 1792182734