Diff of the two buildlogs: -- --- b1/build.log 2025-11-20 05:33:55.335221118 +0000 +++ b2/build.log 2025-11-20 05:35:39.511334162 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 19 17:32:27 -12 2025 -I: pbuilder-time-stamp: 1763616747 +I: Current time: Thu Dec 24 01:56:57 +14 2026 +I: pbuilder-time-stamp: 1798027017 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1629944/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 23 11:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='feb845ee3a124e4684366c14f4677f18' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1629944' - PS1='# ' - PS2='> ' + INVOCATION_ID=830dc907c1404345b7cd355729603f70 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4094370 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rskqb5Xb/pbuilderrc_gKIf --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rskqb5Xb/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rskqb5Xb/pbuilderrc_6h16 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rskqb5Xb/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.57+deb13-cloud-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.57+deb13-cloud-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1629944/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -286,7 +318,7 @@ Get: 166 http://deb.debian.org/debian forky/main arm64 libfml0 arm64 0.1+git20221215.85f159e-1 [65.6 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 libfml-dev arm64 0.1+git20221215.85f159e-1 [79.9 kB] -Fetched 223 MB in 1s (168 MB/s) +Fetched 223 MB in 2s (139 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -1172,7 +1204,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1226,18 +1262,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.661 secs. -The client will now receive all logging from the daemon (pid: 1647520). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1647520.out.log +An attempt to start the daemon took 3.79 secs. +The client will now receive all logging from the daemon (pid: 4125067). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-4125067.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f401734 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f401734 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@365efbfa +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d538886 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d538886 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@75897388 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@231bb8ee +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@14aec96c Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1254,23 +1290,23 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@483bc451 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6bba5cc0 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@365efbfa -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@33225735 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6fb1a63d +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@75897388 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@162b37fb +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@55e721ef :compileJava (Thread[#50,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.009 secs. +Putting task artifact state for task ':compileJava' into context took 0.01 secs. Up-to-date check for task ':compileJava' took 0.038 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 1.93 secs. +:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 3.439 secs. :buildFermiLib (Thread[#50,Task worker for ':',5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Up-to-date check for task ':buildFermiLib' took 0.011 secs. It is not up-to-date because: +Up-to-date check for task ':buildFermiLib' took 0.007 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-21-openjdk-arm64 -> /usr/lib/jvm/java-21-openjdk-arm64 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make @@ -1279,141 +1315,34 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-arm64/include -I/usr/lib/jvm/java-21-openjdk-arm64/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/aarch64-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.337 secs. -:processResources (Thread[#50,Task worker for ':',5,main]) started. +:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.718 secs. +:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.002 secs. -:classes (Thread[#50,Task worker for ':',5,main]) started. +:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.006 secs. +:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#50,Task worker for ':',5,main]) started. +:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.118 secs. -:jar (Thread[#50,Task worker for ':',5,main]) started. +:debianMavenPom (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.337 secs. +:jar (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.021 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.024 secs. It is not up-to-date because: No history is available. -:jar (Thread[#50,Task worker for ':',5,main]) completed. Took 0.114 secs. +:jar (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.132 secs. -BUILD SUCCESSFUL in 17s +BUILD SUCCESSFUL in 22s 4 actionable tasks: 4 executed - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' -# The shared lib should be looked for in its build directory. -LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test - mkdir -p .gradle/init.d - cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=12 test -openjdk version "21.0.9" 2025-10-21 -OpenJDK Runtime Environment (build 21.0.9+10-Debian-1) -OpenJDK 64-Bit Server VM (build 21.0.9+10-Debian-1, mixed mode, sharing) -Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native -To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. -Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.038 secs. -The client will now receive all logging from the daemon (pid: 1651531). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1651531.out.log -Daemon will be stopped at the end of the build stopping after processing -Closing daemon's stdin at end of input. -The daemon will no longer process any standard input. -Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@464655ce -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@464655ce -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c34736f -Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@577aa309 -Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. -Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. -Included projects: [root project 'gatk-fermilite'] - Keep-alive timer started - Adding Debian repository to project 'gatk-fermilite' -Parallel execution is an incubating feature. -Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. - Adding Maven pom generation to project 'gatk-fermilite' - Linking the generated javadoc to the system JDK API documentation -All projects evaluated. -Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@45d101b3 -Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c34736f -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@59785e48 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6a6014f6 -:compileJava (Thread[#50,Task worker for ':',5,main]) started. -:compileJava -Putting task artifact state for task ':compileJava' into context took 0.016 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.058 secs). -:compileJava UP-TO-DATE -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 0.165 secs. -:buildFermiLib (Thread[#50,Task worker for ':',5,main]) started. -:buildFermiLib -Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.007 secs). -:buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.025 secs. -:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. -:processResources -Putting task artifact state for task ':processResources' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found -Skipping task ':processResources' as it has no source files and no previous output files. -:processResources NO-SOURCE -:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.01 secs. -:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) started. -:classes -Skipping task ':classes' as it has no actions. -:classes UP-TO-DATE -:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. -:compileTestJava -Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@6034db1f - Loading the Maven rules... - Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian - Passing through org.beanshell:bsh:jar:debian - Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 0.89 secs. It is not up-to-date because: - No history is available. -All input files are considered out-of-date for incremental task ':compileTestJava'. -Compiling with JDK Java compiler API. -:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 2.416 secs. -:processTestResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. -:processTestResources -Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found -Skipping task ':processTestResources' as it has no source files and no previous output files. -:processTestResources NO-SOURCE -:processTestResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.008 secs. -:testClasses (Thread[#51,Task worker for ':' Thread 2,5,main]) started. -:testClasses -Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.006 secs. -:test (Thread[#51,Task worker for ':' Thread 2,5,main]) started. -:test -Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.12 secs. It is not up-to-date because: - No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath14047688358601941561txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 1' -Gradle Test Executor 1 started executing tests. -Gradle Test Executor 1 finished executing tests. -Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.02 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test -Generating HTML test report... -Finished generating test html results (0.033 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 1.898 secs. - -BUILD SUCCESSFUL in 12s -4 actionable tasks: 2 executed, 2 up-to-date -make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install @@ -1436,8 +1365,8 @@ dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_arm64.deb'. +dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_arm64.changes @@ -1446,12 +1375,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4094370/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1629944 and its subdirectories -I: Current time: Wed Nov 19 17:33:54 -12 2025 -I: pbuilder-time-stamp: 1763616834 +I: removing directory /srv/workspace/pbuilder/4094370 and its subdirectories +I: Current time: Thu Dec 24 01:58:38 +14 2026 +I: pbuilder-time-stamp: 1798027118