Diff of the two buildlogs: -- --- b1/build.log 2025-11-05 14:53:36.203227828 +0000 +++ b2/build.log 2025-11-05 14:54:32.599259709 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 8 09:15:29 -12 2026 -I: pbuilder-time-stamp: 1796764529 +I: Current time: Thu Nov 6 04:53:38 +14 2025 +I: pbuilder-time-stamp: 1762354418 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -25,52 +24,85 @@ dpkg-source: info: applying cifpp-share-dir.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/770231/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 5 14:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='770231' - PS1='# ' - PS2='> ' + INVOCATION_ID=631e72bd344a48cdbf5d3f13c7db00dc + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1162129 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WD7NNeXi/pbuilderrc_EtXA --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WD7NNeXi/b1 --logfile b1/build.log dssp_4.5.5-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WD7NNeXi/pbuilderrc_zOtW --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WD7NNeXi/b2 --logfile b2/build.log dssp_4.5.5-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/770231/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -202,7 +234,7 @@ Get: 78 http://deb.debian.org/debian forky/main arm64 libcifpp-dev arm64 7.0.9-1 [111 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libmcfp-dev arm64 1.4.2-2 [19.4 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 mrc arm64 1.3.16-1 [50.9 kB] -Fetched 68.8 MB in 0s (166 MB/s) +Fetched 68.8 MB in 0s (190 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -537,7 +569,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/dssp-4.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dssp_4.5.5-1_source.changes +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/dssp-4.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dssp_4.5.5-1_source.changes dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 4.5.5-1 dpkg-buildpackage: info: source distribution unstable @@ -552,7 +588,7 @@ dh_update_autotools_config dh_autoreconf dh_auto_configure - cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. + cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_TESTING:BOOL=OFF .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done @@ -571,7 +607,7 @@ -- Detecting C compile features -- Detecting C compile features - done -- Git hash not found --- Configuring done (0.9s) +-- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -591,11 +627,11 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -make -f libdssp/CMakeFiles/dssp.dir/build.make libdssp/CMakeFiles/dssp.dir/depend make -f CMakeFiles/generate_mkdssp_depends_file.dir/build.make CMakeFiles/generate_mkdssp_depends_file.dir/depend -make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' +make -f libdssp/CMakeFiles/dssp.dir/build.make libdssp/CMakeFiles/dssp.dir/depend make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.5.5 /build/reproducible-path/dssp-4.5.5 /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/CMakeFiles/generate_mkdssp_depends_file.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.5.5 /build/reproducible-path/dssp-4.5.5/libdssp /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/libdssp /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/libdssp/CMakeFiles/dssp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' make -f CMakeFiles/generate_mkdssp_depends_file.dir/build.make CMakeFiles/generate_mkdssp_depends_file.dir/build @@ -603,100 +639,46 @@ make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' make -f libdssp/CMakeFiles/dssp.dir/build.make libdssp/CMakeFiles/dssp.dir/build make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[ 10%] Generating depends file for mkdssp resources +[ 14%] Generating depends file for mkdssp resources /usr/bin/mrc -d /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/mrc-mkdssp.dir/rsrc.d -o /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/mrc-mkdssp.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /build/reproducible-path/dssp-4.5.5/libdssp/mmcif_pdbx/dssp-extension.dic make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[ 20%] Built target generate_mkdssp_depends_file -[ 20%] Building CXX object libdssp/CMakeFiles/dssp.dir/src/dssp.cpp.o +[ 28%] Building CXX object libdssp/CMakeFiles/dssp.dir/src/dssp.cpp.o +[ 42%] Building CXX object libdssp/CMakeFiles/dssp.dir/src/dssp-io.cpp.o +[ 42%] Built target generate_mkdssp_depends_file cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/libdssp && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.5.5/libdssp/include -I/build/reproducible-path/dssp-4.5.5/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT libdssp/CMakeFiles/dssp.dir/src/dssp.cpp.o -MF CMakeFiles/dssp.dir/src/dssp.cpp.o.d -o CMakeFiles/dssp.dir/src/dssp.cpp.o -c /build/reproducible-path/dssp-4.5.5/libdssp/src/dssp.cpp -[ 30%] Building CXX object libdssp/CMakeFiles/dssp.dir/src/dssp-io.cpp.o cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/libdssp && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.5.5/libdssp/include -I/build/reproducible-path/dssp-4.5.5/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT libdssp/CMakeFiles/dssp.dir/src/dssp-io.cpp.o -MF CMakeFiles/dssp.dir/src/dssp-io.cpp.o.d -o CMakeFiles/dssp.dir/src/dssp-io.cpp.o -c /build/reproducible-path/dssp-4.5.5/libdssp/src/dssp-io.cpp -[ 40%] Linking CXX static library libdssp.a +[ 57%] Linking CXX static library libdssp.a cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/libdssp && /usr/bin/cmake -P CMakeFiles/dssp.dir/cmake_clean_target.cmake cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/libdssp && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssp.dir/link.txt --verbose=1 /usr/bin/ar qc libdssp.a CMakeFiles/dssp.dir/src/dssp.cpp.o "CMakeFiles/dssp.dir/src/dssp-io.cpp.o" /usr/bin/ranlib libdssp.a make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[ 40%] Built target dssp +[ 57%] Built target dssp make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/depend -make -f test/CMakeFiles/unit-test-dssp.dir/build.make test/CMakeFiles/unit-test-dssp.dir/depend make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.5.5 /build/reproducible-path/dssp-4.5.5/test /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test/CMakeFiles/unit-test-dssp.dir/DependInfo.cmake "--color=" -[ 50%] Generating mrc-mkdssp.dir/rsrc.obj +[ 71%] Generating mrc-mkdssp.dir/rsrc.obj /usr/bin/mrc -o /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/mrc-mkdssp.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /build/reproducible-path/dssp-4.5.5/libdssp/mmcif_pdbx/dssp-extension.dic -make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/unit-test-dssp.dir/build.make test/CMakeFiles/unit-test-dssp.dir/build -make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[ 60%] Building CXX object test/CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o -[ 70%] Building CXX object test/CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o -cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.5.5/test/src -I/build/reproducible-path/dssp-4.5.5/test/include -I/build/reproducible-path/dssp-4.5.5/libdssp/include -I/build/reproducible-path/dssp-4.5.5/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o -MF CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o.d -o CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o -c /build/reproducible-path/dssp-4.5.5/test/unit-test-dssp.cpp -cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.5.5/test/src -I/build/reproducible-path/dssp-4.5.5/test/include -I/build/reproducible-path/dssp-4.5.5/libdssp/include -I/build/reproducible-path/dssp-4.5.5/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o -MF CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o.d -o CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o -c /build/reproducible-path/dssp-4.5.5/libdssp/src/dssp-io.cpp cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.5.5 /build/reproducible-path/dssp-4.5.5 /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/CMakeFiles/mkdssp.dir/DependInfo.cmake "--color=" Dependencies file "mrc-mkdssp.dir/rsrc.d" is newer than depends file "/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/CMakeFiles/mkdssp.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mkdssp make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/build make[3]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[ 80%] Building CXX object CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o +[ 85%] Building CXX object CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.5.5/libdssp/include -I/build/reproducible-path/dssp-4.5.5/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -MF CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o.d -o CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -c /build/reproducible-path/dssp-4.5.5/src/mkdssp.cpp /build/reproducible-path/dssp-4.5.5/src/mkdssp.cpp: In function 'int d_main(int, const char**)': /build/reproducible-path/dssp-4.5.5/src/mkdssp.cpp:132:23: warning: unused variable 'cf' [-Wunused-variable] 132 | auto &cf = cif::validator_factory::instance(); | ^~ -/build/reproducible-path/dssp-4.5.5/test/unit-test-dssp.cpp: In function 'int main(int, char**)': -/build/reproducible-path/dssp-4.5.5/test/unit-test-dssp.cpp:88:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 88 | if (fs::exists(gTestDir / "minimal-components.cif")) - | ^~ -/build/reproducible-path/dssp-4.5.5/test/unit-test-dssp.cpp:91:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 91 | return session.run(); - | ^~~~~~ -[ 90%] Linking CXX executable mkdssp +[100%] Linking CXX executable mkdssp /usr/bin/cmake -E cmake_link_script CMakeFiles/mkdssp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/mkdssp.dir/link.d CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o "mrc-mkdssp.dir/rsrc.obj" -o mkdssp libdssp/libdssp.a /usr/lib/aarch64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/aarch64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[ 90%] Built target mkdssp -[100%] Linking CXX executable unit-test-dssp -cd /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-test-dssp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unit-test-dssp.dir/link.d "CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o" "CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o" -o unit-test-dssp ../libdssp/libdssp.a /usr/lib/aarch64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so -make[3]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -[100%] Built target unit-test-dssp +[100%] Built target mkdssp make[2]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' - dh_auto_test - cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 -make[1]: Entering directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' -Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j12 -UpdateCTestConfiguration from :/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/DartConfiguration.tcl -Parse Config file:/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/DartConfiguration.tcl -UpdateCTestConfiguration from :/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/DartConfiguration.tcl -Parse Config file:/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/DartConfiguration.tcl -Test project /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu -Constructing a list of tests -Done constructing a list of tests -Updating test list for fixtures -Added 0 tests to meet fixture requirements -Checking test dependency graph... -Checking test dependency graph end -Connected to MAKE jobserver -test 1 - Start 1: unit-test-dssp - -1: Test command: /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test/unit-test-dssp "--data-dir" "/build/reproducible-path/dssp-4.5.5/test" "--rsrc-dir" "/build/reproducible-path/dssp-4.5.5/test/../libdssp/mmcif_pdbx/" -1: Working Directory: /build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu/test -1: Test timeout computed to be: 1500 -1: Randomness seeded to: 2103617654 -1: =============================================================================== -1: All tests passed (1273 assertions in 6 test cases) -1: -1/1 Test #1: unit-test-dssp ................... Passed 1.12 sec - -100% tests passed, 0 tests failed out of 1 - -Total Test time (real) = 1.12 sec -make[1]: Leaving directory '/build/reproducible-path/dssp-4.5.5/obj-aarch64-linux-gnu' +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dssp/ @@ -743,12 +725,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1162129/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/770231 and its subdirectories -I: Current time: Tue Dec 8 09:16:35 -12 2026 -I: pbuilder-time-stamp: 1796764595 +I: removing directory /srv/workspace/pbuilder/1162129 and its subdirectories +I: Current time: Thu Nov 6 04:54:31 +14 2025 +I: pbuilder-time-stamp: 1762354471