Diff of the two buildlogs: -- --- b1/build.log 2025-11-28 20:09:06.073714240 +0000 +++ b2/build.log 2025-11-28 20:11:52.181908248 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 28 08:06:34 -12 2025 -I: pbuilder-time-stamp: 1764360394 +I: Current time: Fri Jan 1 16:32:07 +14 2027 +I: pbuilder-time-stamp: 1798770727 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying add_path_to_testscript.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2673986/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 1 02:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='650a8344714d48bc9dab448fe7342a4b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2673986' - PS1='# ' - PS2='> ' + INVOCATION_ID=fbffaf2df0c447a0a54e82154bf0f965 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1590987 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0mavvojq/pbuilderrc_PbAx --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0mavvojq/b1 --logfile b1/build.log spaln_3.0.7+dfsg-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0mavvojq/pbuilderrc_fgo7 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0mavvojq/b2 --logfile b2/build.log spaln_3.0.7+dfsg-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2673986/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -145,7 +177,7 @@ Get: 31 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 14.7 MB in 6s (2519 kB/s) +Fetched 14.7 MB in 0s (77.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -298,7 +330,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/spaln-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spaln_3.0.7+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/spaln-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spaln_3.0.7+dfsg-1_source.changes dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 3.0.7+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -345,58 +381,58 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/spaln-3.0.7+dfsg' dh_auto_build -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin - cd src && make -j40 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin + cd src && make -j42 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin make[2]: Entering directory '/build/reproducible-path/spaln-3.0.7+dfsg/src' x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c blksrc.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c aln2.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c dbs.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c gaps.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c codepot.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c divseq.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c gsinfo.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2b1.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2d1.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2h1.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2s1.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c bitpat.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c eijunc.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c eijunc.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c seq.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c simmtx.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sqpr.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c utilseq.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c vmf.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c vmf.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c wln.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c boyer_moore.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c clib.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c iolib.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c mfile.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sets.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c supprime.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ seq.cc: In function 'void reportseq(Seq**, int)': seq.cc:486:50: warning: format '%p' expects argument of type 'void*', but argument 9 has type 'int*' [-Wformat=] 486 | printf("%d\t%d\t%d\t%d\t%d\t%d\t%p\t%p\n", i + 1, @@ -416,11 +452,11 @@ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o eijunc.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o x86_64-linux-gnu-ranlib sblib.a +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o spaln spaln.cc blksrc.o sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o spaln spaln.cc blksrc.o sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ sortgrcd.cc: In function 'int count_record(const char*, const char*, size_t)': sortgrcd.cc:999:25: warning: ISO C++ forbids variable length array 'buf' [-Wvla] @@ -444,58 +480,7 @@ | ^ make[2]: Leaving directory '/build/reproducible-path/spaln-3.0.7+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.7+dfsg' - dh_auto_test -O--sourcedirectory=src - cd src && make -j40 test TESTSUITEFLAGS="-j40 --verbose" VERBOSE=1 -make[1]: Entering directory '/build/reproducible-path/spaln-3.0.7+dfsg/src' -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c autocomp.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c extcds.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c montseq.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c pattern.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c resite.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o exinpot exinpot.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o kmers kmers.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o npssm npssm.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c utn.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c ildpdf.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c decompild.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fitild.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-ar rc ublib.a autocomp.o extcds.o \ -montseq.o pattern.o resite.o -x86_64-linux-gnu-ranlib ublib.a -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o dvn dvn.cc ublib.a sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o rdn rdn.cc ublib.a sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o fitild -DMAIN fitild.cc ildpdf.o clib.a -L/usr/local/lib -lgsl -lgslcblas -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o compild compild.cc ildpdf.o clib.a -L/usr/local/lib -lgsl -lgslcblas -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o decompild decompild.o ildpdf.o fitild.o clib.a -L/usr/local/lib -lgsl -lgslcblas -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o plotild plotild.cc ildpdf.o clib.a -L/usr/local/lib -lgsl -lgslcblas -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -plotild.cc: In function 'getiprms': -plotild.cc:138:49: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 138 | IldPrm* ipprm = new IldPrm[nn + nprm + 1]; - | ^ -/usr/include/c++/15/new:140:26: note: in a call to allocation function 'operator new []' declared here - 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) - | ^ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.7+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o utn utn.o ublib.a sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -please make install before test -make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.7+dfsg/src' - rm -fr -- /tmp/dh-xdg-rundir-sBmYflBu +dh: command-omitted: The call to "dh_auto_test -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src @@ -506,7 +491,7 @@ make[1]: Entering directory '/build/reproducible-path/spaln-3.0.7+dfsg' dh_auto_install -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin install -m0755 -d /build/reproducible-path/spaln-3.0.7\+dfsg/debian/tmp - cd src && make -j40 install DESTDIR=/build/reproducible-path/spaln-3.0.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin + cd src && make -j42 install DESTDIR=/build/reproducible-path/spaln-3.0.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin make[2]: Entering directory '/build/reproducible-path/spaln-3.0.7+dfsg/src' test -d /build/reproducible-path/spaln-3.0.7+dfsg/debian/tmp/usr/bin || mkdir -p /build/reproducible-path/spaln-3.0.7+dfsg/debian/tmp/usr/bin if [ -s spaln ]; then\ @@ -574,10 +559,10 @@ install -m0755 -d debian/spaln-data/usr/share/doc/spaln-data install -p -m0644 debian/copyright debian/spaln-data/usr/share/doc/spaln-data/copyright dh_installchangelogs -O--sourcedirectory=src - install -m0755 -d debian/spaln/usr/share/doc/spaln - install -p -m0644 debian/.debhelper/generated/spaln/dh_installchangelogs.dch.trimmed debian/spaln/usr/share/doc/spaln/changelog.Debian install -m0755 -d debian/spaln-data/usr/share/doc/spaln-data install -p -m0644 debian/.debhelper/generated/spaln-data/dh_installchangelogs.dch.trimmed debian/spaln-data/usr/share/doc/spaln-data/changelog.Debian + install -m0755 -d debian/spaln/usr/share/doc/spaln + install -p -m0644 debian/.debhelper/generated/spaln/dh_installchangelogs.dch.trimmed debian/spaln/usr/share/doc/spaln/changelog.Debian dh_installman -O--sourcedirectory=src install -m0755 -d debian/spaln/usr/share/man/man1/ install -p -m0644 ./sortgrcd.1 debian/spaln/usr/share/man/man1/sortgrcd.1 @@ -601,10 +586,10 @@ dh_compress -O--sourcedirectory=src cd debian/spaln cd debian/spaln-data - chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 chmod a-x usr/share/doc/spaln-data/changelog.Debian - gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 + chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 gzip -9nf usr/share/doc/spaln-data/changelog.Debian + gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 cd '/build/reproducible-path/spaln-3.0.7+dfsg' cd '/build/reproducible-path/spaln-3.0.7+dfsg' dh_fixperms -O--sourcedirectory=src @@ -612,89 +597,39 @@ find debian/spaln-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/spaln-data/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/spaln-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/spaln-data/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/spaln-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/spaln-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/spaln-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src install -m0755 -d debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu - dwz -mdebian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug -- debian/spaln/usr/bin/compild debian/spaln/usr/bin/decompild debian/spaln/usr/bin/dvn debian/spaln/usr/bin/exinpot debian/spaln/usr/bin/fitild debian/spaln/usr/bin/kmers debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/npssm debian/spaln/usr/bin/plotild debian/spaln/usr/bin/rdn debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln debian/spaln/usr/bin/utn + dwz -mdebian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug -- debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug chmod 0644 -- debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug dh_strip -a -O--sourcedirectory=src - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/97 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/npssm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/97/b4459c90672c313658abdd3f2b81181a6e1571.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/97/b4459c90672c313658abdd3f2b81181a6e1571.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/npssm - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/97/b4459c90672c313658abdd3f2b81181a6e1571.debug debian/spaln/usr/bin/npssm - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/00 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/exinpot debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/00/3fce9c1598952d8f5ee019172540719ba5d698.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/00/3fce9c1598952d8f5ee019172540719ba5d698.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/exinpot - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/00/3fce9c1598952d8f5ee019172540719ba5d698.debug debian/spaln/usr/bin/exinpot - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4d - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/decompild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4d/1ba149085360cdb4c6a298830f51845949d099.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4d/1ba149085360cdb4c6a298830f51845949d099.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/decompild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4d/1ba149085360cdb4c6a298830f51845949d099.debug debian/spaln/usr/bin/decompild - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/32 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/utn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/32/4f612fe8610bf261eab7dd2552b4efb5236a14.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/32/4f612fe8610bf261eab7dd2552b4efb5236a14.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/utn - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/32/4f612fe8610bf261eab7dd2552b4efb5236a14.debug debian/spaln/usr/bin/utn - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/93 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/compild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/93/87503853479c870e0d29c7a0abbfb768ffe3b5.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/93/87503853479c870e0d29c7a0abbfb768ffe3b5.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/compild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/93/87503853479c870e0d29c7a0abbfb768ffe3b5.debug debian/spaln/usr/bin/compild - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/6d - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/fitild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/6d/c9dccb21d92433ed3a19ebb2cc8fb1d64d81e2.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/6d/c9dccb21d92433ed3a19ebb2cc8fb1d64d81e2.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/fitild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/6d/c9dccb21d92433ed3a19ebb2cc8fb1d64d81e2.debug debian/spaln/usr/bin/fitild - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/65 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/dvn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/65/a223cb7900e609e4ddb2ce05724e70461b8110.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/65/a223cb7900e609e4ddb2ce05724e70461b8110.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/dvn - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/65/a223cb7900e609e4ddb2ce05724e70461b8110.debug debian/spaln/usr/bin/dvn - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34/05158a4e56e3e959f1874108bc84e29faff59d.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34/05158a4e56e3e959f1874108bc84e29faff59d.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34/05158a4e56e3e959f1874108bc84e29faff59d.debug debian/spaln/usr/bin/spaln - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09/f8f62cbf52ab021fdcfa58f270bbe21cedd921.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09/f8f62cbf52ab021fdcfa58f270bbe21cedd921.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09/f8f62cbf52ab021fdcfa58f270bbe21cedd921.debug debian/spaln/usr/bin/makdbs install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/12/2c7f0d91ba5703a54b9a08455c5cdf755f5d7f.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/12/2c7f0d91ba5703a54b9a08455c5cdf755f5d7f.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/12/2c7f0d91ba5703a54b9a08455c5cdf755f5d7f.debug debian/spaln/usr/bin/sortgrcd - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/8c - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/kmers debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/8c/470027f87562be8c17e0d16bf92a2ec352f3a7.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/8c/470027f87562be8c17e0d16bf92a2ec352f3a7.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/kmers - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/8c/470027f87562be8c17e0d16bf92a2ec352f3a7.debug debian/spaln/usr/bin/kmers - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/04 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/rdn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/04/47edf977e9e67faf6ca07a2113fe05057b3fa3.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/04/47edf977e9e67faf6ca07a2113fe05057b3fa3.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/rdn - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/04/47edf977e9e67faf6ca07a2113fe05057b3fa3.debug debian/spaln/usr/bin/rdn - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/plotild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/e12fee8faa934cd571fd026ab585d2338259bc.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/e12fee8faa934cd571fd026ab585d2338259bc.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/plotild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/e12fee8faa934cd571fd026ab585d2338259bc.debug debian/spaln/usr/bin/plotild + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34/05158a4e56e3e959f1874108bc84e29faff59d.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34/05158a4e56e3e959f1874108bc84e29faff59d.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/34/05158a4e56e3e959f1874108bc84e29faff59d.debug debian/spaln/usr/bin/spaln install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3b/07bd92e81c40f2bbdfff6bb22cbd9c26f22b93.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3b/07bd92e81c40f2bbdfff6bb22cbd9c26f22b93.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3b/07bd92e81c40f2bbdfff6bb22cbd9c26f22b93.debug debian/spaln/usr/bin/makmdm + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09/f8f62cbf52ab021fdcfa58f270bbe21cedd921.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09/f8f62cbf52ab021fdcfa58f270bbe21cedd921.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/09/f8f62cbf52ab021fdcfa58f270bbe21cedd921.debug debian/spaln/usr/bin/makdbs install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/spaln/usr/lib/debug/.dwz @@ -706,7 +641,7 @@ rm -f debian/spaln/DEBIAN/shlibs dh_shlibdeps -a -O--sourcedirectory=src install -m0755 -d debian/spaln/DEBIAN - dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/npssm debian/spaln/usr/bin/exinpot debian/spaln/usr/bin/decompild debian/spaln/usr/bin/utn debian/spaln/usr/bin/compild debian/spaln/usr/bin/fitild debian/spaln/usr/bin/dvn debian/spaln/usr/bin/spaln debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/kmers debian/spaln/usr/bin/rdn debian/spaln/usr/bin/plotild debian/spaln/usr/bin/makmdm + dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/makdbs dh_installdeb -O--sourcedirectory=src install -m0755 -d debian/spaln/DEBIAN install -m0755 -d debian/spaln-data/DEBIAN @@ -719,7 +654,7 @@ echo misc:Depends= >> debian/spaln.substvars echo misc:Pre-Depends= >> debian/spaln.substvars install -m0755 -d debian/.debhelper/spaln/dbgsym-root/DEBIAN - dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -cdebian/control -Pdebian/.debhelper/spaln/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=spaln-dbgsym -DDepends="spaln (= \${binary:Version})" -DDescription="debug symbols for spaln" -DBuild-Ids="003fce9c1598952d8f5ee019172540719ba5d698 0447edf977e9e67faf6ca07a2113fe05057b3fa3 09f8f62cbf52ab021fdcfa58f270bbe21cedd921 122c7f0d91ba5703a54b9a08455c5cdf755f5d7f 27e12fee8faa934cd571fd026ab585d2338259bc 324f612fe8610bf261eab7dd2552b4efb5236a14 3405158a4e56e3e959f1874108bc84e29faff59d 3b07bd92e81c40f2bbdfff6bb22cbd9c26f22b93 4d1ba149085360cdb4c6a298830f51845949d099 65a223cb7900e609e4ddb2ce05724e70461b8110 6dc9dccb21d92433ed3a19ebb2cc8fb1d64d81e2 8c470027f87562be8c17e0d16bf92a2ec352f3a7 9387503853479c870e0d29c7a0abbfb768ffe3b5 97b4459c90672c313658abdd3f2b81181a6e1571" -DSection=debug -UMulti-Arch -UReplaces -UBreaks + dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -cdebian/control -Pdebian/.debhelper/spaln/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=spaln-dbgsym -DDepends="spaln (= \${binary:Version})" -DDescription="debug symbols for spaln" -DBuild-Ids="09f8f62cbf52ab021fdcfa58f270bbe21cedd921 122c7f0d91ba5703a54b9a08455c5cdf755f5d7f 3405158a4e56e3e959f1874108bc84e29faff59d 3b07bd92e81c40f2bbdfff6bb22cbd9c26f22b93" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/control dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -cdebian/control -Pdebian/spaln dpkg-gencontrol: warning: package spaln-data: substitution variable ${perl:Depends} unused, but is defined @@ -739,8 +674,8 @@ dpkg-deb --root-owner-group --build debian/spaln .. dpkg-deb --root-owner-group --build debian/.debhelper/spaln/dbgsym-root .. dpkg-deb --root-owner-group --build debian/spaln-data .. -dpkg-deb: building package 'spaln' in '../spaln_3.0.7+dfsg-1_amd64.deb'. dpkg-deb: building package 'spaln-dbgsym' in '../spaln-dbgsym_3.0.7+dfsg-1_amd64.deb'. +dpkg-deb: building package 'spaln' in '../spaln_3.0.7+dfsg-1_amd64.deb'. dpkg-deb: building package 'spaln-data' in '../spaln-data_3.0.7+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../spaln_3.0.7+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../spaln_3.0.7+dfsg-1_amd64.changes @@ -749,12 +684,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1590987/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2673986 and its subdirectories -I: Current time: Fri Nov 28 08:09:05 -12 2025 -I: pbuilder-time-stamp: 1764360545 +I: removing directory /srv/workspace/pbuilder/1590987 and its subdirectories +I: Current time: Fri Jan 1 16:34:50 +14 2027 +I: pbuilder-time-stamp: 1798770890