Diff of the two buildlogs: -- --- b1/build.log 2025-10-09 10:37:22.533172276 +0000 +++ b2/build.log 2025-10-09 10:40:18.633291203 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 11 04:54:50 -12 2026 -I: pbuilder-time-stamp: 1794416090 +I: Current time: Fri Oct 10 00:37:24 +14 2025 +I: pbuilder-time-stamp: 1760006244 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying add_path_to_testscript.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3482710/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 9 10:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='fea8eda32ac445f0a1601150189e91de' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3482710' - PS1='# ' - PS2='> ' + INVOCATION_ID=743f9dc630bf4ced933c0de5d9edfc64 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1266456 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UonNNyTj/pbuilderrc_vCLY --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UonNNyTj/b1 --logfile b1/build.log spaln_3.0.2+dfsg-2.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UonNNyTj/pbuilderrc_njPa --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UonNNyTj/b2 --logfile b2/build.log spaln_3.0.2+dfsg-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3482710/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -145,7 +177,7 @@ Get: 31 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 14.7 MB in 0s (72.0 MB/s) +Fetched 14.7 MB in 8s (1864 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -292,7 +324,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/spaln-3.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spaln_3.0.2+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/spaln-3.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spaln_3.0.2+dfsg-2_source.changes dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 3.0.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -339,7 +375,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg' dh_auto_build -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin - cd src && make -j42 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin + cd src && make -j40 table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin make[2]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg/src' x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c blksrc.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c aln2.cc @@ -353,20 +389,25 @@ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2h1.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fwd2s1.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c bitpat.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c eijunc.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c seq.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c simmtx.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sqpr.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c utilseq.cc +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c vmf.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c wln.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -374,16 +415,11 @@ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c boyer_moore.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c clib.cc -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c iolib.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c mfile.cc +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sets.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c sets.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c supprime.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -410,11 +446,11 @@ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o eijunc.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o x86_64-linux-gnu-ranlib sblib.a +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o spaln spaln.cc blksrc.o sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o spaln spaln.cc blksrc.o sblib.a clib.a -lpthread -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ sortgrcd.cc: In function 'int count_record(const char*, const char*, size_t)': sortgrcd.cc:999:25: warning: ISO C++ forbids variable length array 'buf' [-Wvla] @@ -439,7 +475,7 @@ make[2]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg' dh_auto_test -O--sourcedirectory=src - cd src && make -j42 test TESTSUITEFLAGS="-j42 --verbose" VERBOSE=1 + cd src && make -j40 test TESTSUITEFLAGS="-j40 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg/src' x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c autocomp.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c extcds.cc @@ -452,10 +488,10 @@ x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c utn.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c ildpdf.cc x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c decompild.cc -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fitild.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -c fitild.cc cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -480,7 +516,6 @@ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o utn utn.o ublib.a sblib.a clib.a -lpthread -lm -lz plotild.cc: In function 'getiprms': plotild.cc:136:49: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 136 | IldPrm* ipprm = new IldPrm[nn + nprm + 1]; @@ -488,9 +523,10 @@ /usr/include/c++/15/new:140:26: note: in a call to allocation function 'operator new []' declared here 140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) | ^ +x86_64-linux-gnu-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/spaln-3.0.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DM_THREAD=1 -o utn utn.o ublib.a sblib.a clib.a -lpthread -lm -lz please make install before test make[1]: Leaving directory '/build/reproducible-path/spaln-3.0.2+dfsg/src' - rm -fr -- /tmp/dh-xdg-rundir-X9GO7JJS + rm -fr -- /tmp/dh-xdg-rundir-GbYemrBX create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src @@ -501,7 +537,7 @@ make[1]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg' dh_auto_install -- table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin install -m0755 -d /build/reproducible-path/spaln-3.0.2\+dfsg/debian/tmp - cd src && make -j42 install DESTDIR=/build/reproducible-path/spaln-3.0.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin + cd src && make -j40 install DESTDIR=/build/reproducible-path/spaln-3.0.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin make[2]: Entering directory '/build/reproducible-path/spaln-3.0.2+dfsg/src' test -d /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin || mkdir -p /build/reproducible-path/spaln-3.0.2+dfsg/debian/tmp/usr/bin if [ -s spaln ]; then\ @@ -580,39 +616,39 @@ install -p -m0644 ./spaln.1 debian/spaln/usr/share/man/man1/spaln.1 man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/sortgrcd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/spaln.1 - mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1 - chmod 0644 -- debian/spaln/usr/share/man/man1/spaln.1 mv debian/spaln/usr/share/man/man1/sortgrcd.1.dh-new debian/spaln/usr/share/man/man1/sortgrcd.1 chmod 0644 -- debian/spaln/usr/share/man/man1/sortgrcd.1 + mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1 + chmod 0644 -- debian/spaln/usr/share/man/man1/spaln.1 dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src mv debian/spaln-data.substvars.new debian/spaln-data.substvars dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src Using 1707770215 as canonical time - Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.cf.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.faa.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.cf.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc_g.gf.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--sourcedirectory=src cd debian/spaln cd debian/spaln-data - chmod a-x usr/share/doc/spaln-data/changelog.Debian chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 - gzip -9nf usr/share/doc/spaln-data/changelog.Debian + chmod a-x usr/share/doc/spaln-data/changelog.Debian gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 + gzip -9nf usr/share/doc/spaln-data/changelog.Debian cd '/build/reproducible-path/spaln-3.0.2+dfsg' cd '/build/reproducible-path/spaln-3.0.2+dfsg' dh_fixperms -O--sourcedirectory=src find debian/spaln ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/spaln-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/spaln-data/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/spaln-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/spaln-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/spaln-data/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/spaln-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/spaln-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src install -m0755 -d debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu @@ -620,76 +656,76 @@ objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug chmod 0644 -- debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu/spaln.debug dh_strip -a -O--sourcedirectory=src - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/decompild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/352daae99c0529df3c929355d9dca310981458.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/352daae99c0529df3c929355d9dca310981458.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/decompild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/352daae99c0529df3c929355d9dca310981458.debug debian/spaln/usr/bin/decompild - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45/fa4b9926361725fb79dc3b97fa5f537b6d75c1.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45/fa4b9926361725fb79dc3b97fa5f537b6d75c1.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45/fa4b9926361725fb79dc3b97fa5f537b6d75c1.debug debian/spaln/usr/bin/sortgrcd - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57/df8df0f629d3717ace291b4d64d0ba684b35e4.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57/df8df0f629d3717ace291b4d64d0ba684b35e4.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57/df8df0f629d3717ace291b4d64d0ba684b35e4.debug debian/spaln/usr/bin/spaln - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/rdn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b/6b6d102282ced24008e72e416dd83719bf726d.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b/6b6d102282ced24008e72e416dd83719bf726d.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/rdn - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b/6b6d102282ced24008e72e416dd83719bf726d.debug debian/spaln/usr/bin/rdn install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3f objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/npssm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3f/728aa435d3ce5d310ce277f4588834dfc4e23d.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3f/728aa435d3ce5d310ce277f4588834dfc4e23d.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/npssm objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/3f/728aa435d3ce5d310ce277f4588834dfc4e23d.debug debian/spaln/usr/bin/npssm - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/d864f602c30574f177199d562a8b95f8538d79.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/d864f602c30574f177199d562a8b95f8538d79.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/d864f602c30574f177199d562a8b95f8538d79.debug debian/spaln/usr/bin/makmdm - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/dvn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f/924814a158374814328bc8efacb851215eb438.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f/924814a158374814328bc8efacb851215eb438.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/dvn - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f/924814a158374814328bc8efacb851215eb438.debug debian/spaln/usr/bin/dvn - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/fitild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1/e7e810e09fe71b9a941b72522e4039d02eb209.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1/e7e810e09fe71b9a941b72522e4039d02eb209.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/fitild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1/e7e810e09fe71b9a941b72522e4039d02eb209.debug debian/spaln/usr/bin/fitild - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/compild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9/373a461513542583ee97f33bdecad3fa03e638.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9/373a461513542583ee97f33bdecad3fa03e638.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/compild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9/373a461513542583ee97f33bdecad3fa03e638.debug debian/spaln/usr/bin/compild - install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/plotild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/3e77f16577651a975ed9e5ebf048f47c22290e.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/3e77f16577651a975ed9e5ebf048f47c22290e.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/plotild - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/3e77f16577651a975ed9e5ebf048f47c22290e.debug debian/spaln/usr/bin/plotild install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/exinpot debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9a/cfd5ec487efa646d26dbf274cb9d6946e41319.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9a/cfd5ec487efa646d26dbf274cb9d6946e41319.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/exinpot objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/9a/cfd5ec487efa646d26dbf274cb9d6946e41319.debug debian/spaln/usr/bin/exinpot install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27 - objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/kmers debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/6d50cfc357537315a99e74da4284677013cfac.debug - chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/6d50cfc357537315a99e74da4284677013cfac.debug - strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/kmers - objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/6d50cfc357537315a99e74da4284677013cfac.debug debian/spaln/usr/bin/kmers + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/decompild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/352daae99c0529df3c929355d9dca310981458.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/352daae99c0529df3c929355d9dca310981458.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/decompild + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/352daae99c0529df3c929355d9dca310981458.debug debian/spaln/usr/bin/decompild install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/utn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/20/b20fca0fda48166cd8e57b806aac326d5d36ed.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/20/b20fca0fda48166cd8e57b806aac326d5d36ed.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/utn objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/20/b20fca0fda48166cd8e57b806aac326d5d36ed.debug debian/spaln/usr/bin/utn + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/compild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9/373a461513542583ee97f33bdecad3fa03e638.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9/373a461513542583ee97f33bdecad3fa03e638.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/compild + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/d9/373a461513542583ee97f33bdecad3fa03e638.debug debian/spaln/usr/bin/compild + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/fitild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1/e7e810e09fe71b9a941b72522e4039d02eb209.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1/e7e810e09fe71b9a941b72522e4039d02eb209.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/fitild + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/f1/e7e810e09fe71b9a941b72522e4039d02eb209.debug debian/spaln/usr/bin/fitild + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/dvn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f/924814a158374814328bc8efacb851215eb438.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f/924814a158374814328bc8efacb851215eb438.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/dvn + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/4f/924814a158374814328bc8efacb851215eb438.debug debian/spaln/usr/bin/dvn + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57/df8df0f629d3717ace291b4d64d0ba684b35e4.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57/df8df0f629d3717ace291b4d64d0ba684b35e4.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/57/df8df0f629d3717ace291b4d64d0ba684b35e4.debug debian/spaln/usr/bin/spaln install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cc/a92808a10bccc4c892b7a94c014efa3c16f70d.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cc/a92808a10bccc4c892b7a94c014efa3c16f70d.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/cc/a92808a10bccc4c892b7a94c014efa3c16f70d.debug debian/spaln/usr/bin/makdbs + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45/fa4b9926361725fb79dc3b97fa5f537b6d75c1.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45/fa4b9926361725fb79dc3b97fa5f537b6d75c1.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/45/fa4b9926361725fb79dc3b97fa5f537b6d75c1.debug debian/spaln/usr/bin/sortgrcd + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27 + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/kmers debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/6d50cfc357537315a99e74da4284677013cfac.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/6d50cfc357537315a99e74da4284677013cfac.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/kmers + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/27/6d50cfc357537315a99e74da4284677013cfac.debug debian/spaln/usr/bin/kmers + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/rdn debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b/6b6d102282ced24008e72e416dd83719bf726d.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b/6b6d102282ced24008e72e416dd83719bf726d.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/rdn + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/5b/6b6d102282ced24008e72e416dd83719bf726d.debug debian/spaln/usr/bin/rdn + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/plotild debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/3e77f16577651a975ed9e5ebf048f47c22290e.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/3e77f16577651a975ed9e5ebf048f47c22290e.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/plotild + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/3e77f16577651a975ed9e5ebf048f47c22290e.debug debian/spaln/usr/bin/plotild + install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e + objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/d864f602c30574f177199d562a8b95f8538d79.debug + chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/d864f602c30574f177199d562a8b95f8538d79.debug + strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm + objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/2e/d864f602c30574f177199d562a8b95f8538d79.debug debian/spaln/usr/bin/makmdm install -m0755 -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/spaln/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/spaln/usr/lib/debug/.dwz @@ -701,7 +737,7 @@ rm -f debian/spaln/DEBIAN/shlibs dh_shlibdeps -a -O--sourcedirectory=src install -m0755 -d debian/spaln/DEBIAN - dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/decompild debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln debian/spaln/usr/bin/rdn debian/spaln/usr/bin/npssm debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/dvn debian/spaln/usr/bin/fitild debian/spaln/usr/bin/compild debian/spaln/usr/bin/plotild debian/spaln/usr/bin/exinpot debian/spaln/usr/bin/kmers debian/spaln/usr/bin/utn debian/spaln/usr/bin/makdbs + dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/npssm debian/spaln/usr/bin/exinpot debian/spaln/usr/bin/decompild debian/spaln/usr/bin/utn debian/spaln/usr/bin/compild debian/spaln/usr/bin/fitild debian/spaln/usr/bin/dvn debian/spaln/usr/bin/spaln debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/kmers debian/spaln/usr/bin/rdn debian/spaln/usr/bin/plotild debian/spaln/usr/bin/makmdm dh_installdeb -O--sourcedirectory=src install -m0755 -d debian/spaln/DEBIAN install -m0755 -d debian/spaln-data/DEBIAN @@ -721,8 +757,8 @@ chmod 0644 -- debian/spaln-data/DEBIAN/control chmod 0644 -- debian/spaln/DEBIAN/control dh_md5sums -O--sourcedirectory=src - install -m0755 -d debian/spaln-data/DEBIAN install -m0755 -d debian/spaln/DEBIAN + install -m0755 -d debian/spaln-data/DEBIAN cd debian/spaln >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/spaln-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/spaln/DEBIAN/md5sums @@ -734,8 +770,8 @@ dpkg-deb --root-owner-group --build debian/spaln .. dpkg-deb --root-owner-group --build debian/.debhelper/spaln/dbgsym-root .. dpkg-deb --root-owner-group --build debian/spaln-data .. -dpkg-deb: building package 'spaln' in '../spaln_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'spaln-dbgsym' in '../spaln-dbgsym_3.0.2+dfsg-2_amd64.deb'. +dpkg-deb: building package 'spaln' in '../spaln_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'spaln-data' in '../spaln-data_3.0.2+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../spaln_3.0.2+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../spaln_3.0.2+dfsg-2_amd64.changes @@ -744,12 +780,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1266456/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3482710 and its subdirectories -I: Current time: Wed Nov 11 05:00:21 -12 2026 -I: pbuilder-time-stamp: 1794416421 +I: removing directory /srv/workspace/pbuilder/1266456 and its subdirectories +I: Current time: Fri Oct 10 00:40:18 +14 2025 +I: pbuilder-time-stamp: 1760006418