Diff of the two buildlogs: -- --- b1/build.log 2025-08-29 18:37:16.014598602 +0000 +++ b2/build.log 2025-08-29 18:42:44.158989176 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Aug 29 06:34:38 -12 2025 -I: pbuilder-time-stamp: 1756492478 +I: Current time: Fri Oct 2 15:00:19 +14 2026 +I: pbuilder-time-stamp: 1790902819 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying python2to3_for_executables.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1548347/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 2 01:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='812ed3057ac541deb999115c754904b4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1548347' - PS1='# ' - PS2='> ' + INVOCATION_ID=af25e80a6fc14f9bb29111120c91326d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=517300 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nKdrHFoc/pbuilderrc_Ukcd --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nKdrHFoc/b1 --logfile b1/build.log python-deeptools_3.5.6+dfsg-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nKdrHFoc/pbuilderrc_8yuJ --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nKdrHFoc/b2 --logfile b2/build.log python-deeptools_3.5.6+dfsg-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1548347/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -345,7 +377,7 @@ Get: 208 http://deb.debian.org/debian forky/main amd64 python3-pybigwig amd64 0.3.23+dfsg-1+b3 [37.8 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.3.5-2 [250 kB] -Fetched 128 MB in 3s (38.0 MB/s) +Fetched 128 MB in 15s (8684 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19855 files and directories currently installed.) @@ -1027,8 +1059,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Aug 29 18:36:03 UTC 2025. -Universal Time is now: Fri Aug 29 18:36:03 UTC 2025. +Local time is now: Fri Oct 2 01:03:30 UTC 2026. +Universal Time is now: Fri Oct 2 01:03:30 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1227,7 +1259,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-deeptools-3.5.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptools_3.5.6+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-deeptools-3.5.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptools_3.5.6+dfsg-1_source.changes dpkg-buildpackage: info: source package python-deeptools dpkg-buildpackage: info: source version 3.5.6+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1272,8 +1308,8 @@ ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). - By 2026-Feb-18, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** @@ -1284,48 +1320,48 @@ running build running build_py creating build/lib/deeptools -copying deeptools/parserCommon.py -> build/lib/deeptools -copying deeptools/__init__.py -> build/lib/deeptools -copying deeptools/correlation_heatmap.py -> build/lib/deeptools -copying deeptools/heatmapper.py -> build/lib/deeptools -copying deeptools/countReadsPerBin.py -> build/lib/deeptools -copying deeptools/correlation.py -> build/lib/deeptools -copying deeptools/bamPEFragmentSize.py -> build/lib/deeptools -copying deeptools/plotCoverage.py -> build/lib/deeptools +copying deeptools/computeMatrixOperations.py -> build/lib/deeptools copying deeptools/SES_scaleFactor.py -> build/lib/deeptools -copying deeptools/heatmapper_utilities.py -> build/lib/deeptools -copying deeptools/bamCompare.py -> build/lib/deeptools copying deeptools/writeBedGraph_bam_and_bw.py -> build/lib/deeptools -copying deeptools/bigwigAverage.py -> build/lib/deeptools -copying deeptools/computeMatrixOperations.py -> build/lib/deeptools -copying deeptools/writeBedGraph.py -> build/lib/deeptools +copying deeptools/computeGCBias.py -> build/lib/deeptools +copying deeptools/bamHandler.py -> build/lib/deeptools +copying deeptools/heatmapper_utilities.py -> build/lib/deeptools +copying deeptools/correctGCBias.py -> build/lib/deeptools +copying deeptools/misc.py -> build/lib/deeptools +copying deeptools/getRatio.py -> build/lib/deeptools +copying deeptools/estimateScaleFactor.py -> build/lib/deeptools +copying deeptools/bigwigCompare.py -> build/lib/deeptools +copying deeptools/correlation.py -> build/lib/deeptools +copying deeptools/parserCommon.py -> build/lib/deeptools +copying deeptools/countReadsPerBin.py -> build/lib/deeptools +copying deeptools/bamCoverage.py -> build/lib/deeptools +copying deeptools/deeptools_list_tools.py -> build/lib/deeptools copying deeptools/getScaleFactor.py -> build/lib/deeptools -copying deeptools/multiBamSummary.py -> build/lib/deeptools copying deeptools/utilities.py -> build/lib/deeptools +copying deeptools/plotFingerprint.py -> build/lib/deeptools +copying deeptools/bamCompare.py -> build/lib/deeptools +copying deeptools/computeMatrix.py -> build/lib/deeptools copying deeptools/mapReduce.py -> build/lib/deeptools -copying deeptools/multiBigwigSummary.py -> build/lib/deeptools +copying deeptools/plotEnrichment.py -> build/lib/deeptools copying deeptools/plotProfile.py -> build/lib/deeptools -copying deeptools/correctGCBias.py -> build/lib/deeptools -copying deeptools/computeMatrix.py -> build/lib/deeptools -copying deeptools/sumCoveragePerBin.py -> build/lib/deeptools -copying deeptools/deeptools_list_tools.py -> build/lib/deeptools -copying deeptools/bamCoverage.py -> build/lib/deeptools -copying deeptools/computeGCBias.py -> build/lib/deeptools -copying deeptools/plotHeatmap.py -> build/lib/deeptools +copying deeptools/plotCoverage.py -> build/lib/deeptools +copying deeptools/heatmapper.py -> build/lib/deeptools +copying deeptools/__init__.py -> build/lib/deeptools +copying deeptools/multiBigwigSummary.py -> build/lib/deeptools copying deeptools/estimateReadFiltering.py -> build/lib/deeptools -copying deeptools/misc.py -> build/lib/deeptools -copying deeptools/alignmentSieve.py -> build/lib/deeptools -copying deeptools/plotCorrelation.py -> build/lib/deeptools copying deeptools/getScorePerBigWigBin.py -> build/lib/deeptools -copying deeptools/estimateScaleFactor.py -> build/lib/deeptools -copying deeptools/plotPCA.py -> build/lib/deeptools copying deeptools/cm.py -> build/lib/deeptools copying deeptools/getFragmentAndReadSize.py -> build/lib/deeptools -copying deeptools/getRatio.py -> build/lib/deeptools -copying deeptools/plotFingerprint.py -> build/lib/deeptools -copying deeptools/plotEnrichment.py -> build/lib/deeptools -copying deeptools/bamHandler.py -> build/lib/deeptools -copying deeptools/bigwigCompare.py -> build/lib/deeptools +copying deeptools/plotCorrelation.py -> build/lib/deeptools +copying deeptools/writeBedGraph.py -> build/lib/deeptools +copying deeptools/sumCoveragePerBin.py -> build/lib/deeptools +copying deeptools/bigwigAverage.py -> build/lib/deeptools +copying deeptools/bamPEFragmentSize.py -> build/lib/deeptools +copying deeptools/plotPCA.py -> build/lib/deeptools +copying deeptools/multiBamSummary.py -> build/lib/deeptools +copying deeptools/alignmentSieve.py -> build/lib/deeptools +copying deeptools/correlation_heatmap.py -> build/lib/deeptools +copying deeptools/plotHeatmap.py -> build/lib/deeptools running egg_info creating deepTools.egg-info writing deepTools.egg-info/PKG-INFO @@ -1347,53 +1383,53 @@ running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/deeptools -copying build/lib/deeptools/parserCommon.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/__init__.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/correlation_heatmap.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/heatmapper.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/countReadsPerBin.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/correlation.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/bamPEFragmentSize.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/plotCoverage.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/computeMatrixOperations.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/SES_scaleFactor.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/heatmapper_utilities.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/bamCompare.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/writeBedGraph_bam_and_bw.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/bigwigAverage.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/computeMatrixOperations.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/writeBedGraph.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/computeGCBias.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/bamHandler.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/heatmapper_utilities.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/correctGCBias.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/misc.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/getRatio.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/estimateScaleFactor.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/bigwigCompare.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/correlation.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/parserCommon.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/countReadsPerBin.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/bamCoverage.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/deeptools_list_tools.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/getScaleFactor.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/multiBamSummary.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/utilities.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/plotFingerprint.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/bamCompare.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/computeMatrix.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/mapReduce.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/multiBigwigSummary.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/plotEnrichment.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/plotProfile.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/correctGCBias.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/computeMatrix.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/sumCoveragePerBin.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/deeptools_list_tools.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/bamCoverage.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/computeGCBias.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/plotHeatmap.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/plotCoverage.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/heatmapper.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/__init__.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/multiBigwigSummary.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/estimateReadFiltering.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/misc.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/alignmentSieve.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/plotCorrelation.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/getScorePerBigWigBin.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/estimateScaleFactor.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/plotPCA.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/cm.py -> build/bdist.linux-x86_64/wheel/./deeptools copying build/lib/deeptools/getFragmentAndReadSize.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/getRatio.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/plotFingerprint.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/plotEnrichment.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/bamHandler.py -> build/bdist.linux-x86_64/wheel/./deeptools -copying build/lib/deeptools/bigwigCompare.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/plotCorrelation.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/writeBedGraph.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/sumCoveragePerBin.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/bigwigAverage.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/bamPEFragmentSize.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/plotPCA.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/multiBamSummary.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/alignmentSieve.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/correlation_heatmap.py -> build/bdist.linux-x86_64/wheel/./deeptools +copying build/lib/deeptools/plotHeatmap.py -> build/bdist.linux-x86_64/wheel/./deeptools running install_egg_info Copying deepTools.egg-info to build/bdist.linux-x86_64/wheel/./deepTools-3.5.6.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/deeptools-3.5.6.dist-info/WHEEL -creating '/build/reproducible-path/python-deeptools-3.5.6+dfsg/.pybuild/cpython3_3.13_deeptools/.tmp-kulsw7gh/deeptools-3.5.6-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/python-deeptools-3.5.6+dfsg/.pybuild/cpython3_3.13_deeptools/.tmp-d3022hj4/deeptools-3.5.6-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'deeptools/SES_scaleFactor.py' adding 'deeptools/__init__.py' adding 'deeptools/alignmentSieve.py' @@ -1557,8 +1593,8 @@ ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[bam] PASSED [ 99%] ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[cram] PASSED [100%] -======================== 99 passed, 1 skipped in 19.56s ======================== - rm -fr -- /tmp/dh-xdg-rundir-mrXZGAtm +======================== 99 passed, 1 skipped in 18.38s ======================== + rm -fr -- /tmp/dh-xdg-rundir-1WlfFTjZ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1586,28 +1622,28 @@ D: dh_python3 fs:50: moving files from debian/python3-deeptools/usr/lib/python3.13/dist-packages to debian/python3-deeptools/usr/lib/python3/dist-packages/ D: dh_python3 fs:179: Writing INSTALLER in debian/python3-deeptools/usr/lib/python3/dist-packages/deeptools-3.5.6.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-deeptools/usr/lib/python3/dist-packages/deeptools-3.5.6.dist-info -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bamPEFragmentSize +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotProfile I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/deeptools -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bamCoverage -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotFingerprint I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/estimateReadFiltering -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/multiBamSummary -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/multiBigwigSummary -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/computeMatrixOperations -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/computeGCBias I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/alignmentSieve -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bigwigAverage -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotEnrichment -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotCorrelation -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/computeMatrix -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/correctGCBias I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotCoverage -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bigwigCompare +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/correctGCBias I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotHeatmap +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/computeMatrix +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bamPEFragmentSize +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bamCompare +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotCorrelation I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/estimateScaleFactor -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotProfile I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotPCA -I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bamCompare +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/computeMatrixOperations +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/multiBigwigSummary +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/multiBamSummary +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bamCoverage +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotEnrichment +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bigwigCompare +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/computeGCBias +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/bigwigAverage +I: dh_python3 tools:114: replacing shebang in debian/python3-deeptools/usr/bin/plotFingerprint D: dh_python3 fs:338: package python3-deeptools details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-deeptools/usr/lib/python3/dist-packages/deeptools-3.5.6.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-deeptools D: dh_python3 pydist:175: trying to find dependency for numpy>=2.0.0 (python=None) @@ -1637,7 +1673,7 @@ D: dh_python3 pydist:175: trying to find dependency for deeptoolsintervals>=0.1.8 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-scipy', 'python3-numpydoc', 'python3:any', 'python3-pysam', 'python3-py2bit', 'python3-pybigwig', 'python3-matplotlib', 'python3-deeptoolsintervals', 'python3-plotly', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3:any', 'python3-py2bit', 'python3-plotly', 'python3-deeptoolsintervals', 'python3-numpy', 'python3-pysam', 'python3-matplotlib', 'python3-scipy', 'python3-pybigwig', 'python3-numpydoc'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -1684,12 +1720,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/517300/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1548347 and its subdirectories -I: Current time: Fri Aug 29 06:37:15 -12 2025 -I: pbuilder-time-stamp: 1756492635 +I: removing directory /srv/workspace/pbuilder/517300 and its subdirectories +I: Current time: Fri Oct 2 15:05:43 +14 2026 +I: pbuilder-time-stamp: 1790903143