Diff of the two buildlogs: -- --- b1/build.log 2025-09-30 21:39:06.381643058 +0000 +++ b2/build.log 2025-09-30 21:42:46.677899972 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 30 09:36:51 -12 2025 -I: pbuilder-time-stamp: 1759268211 +I: Current time: Tue Nov 3 18:02:07 +14 2026 +I: pbuilder-time-stamp: 1793678527 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying lzma.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1262288/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 3 04:02 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='311e041f1db74bcca2548d54140dd225' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1262288' - PS1='# ' - PS2='> ' + INVOCATION_ID=28f9460d384e4ab69ec024414f5faf83 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2444439 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0ovfGQkl/pbuilderrc_FzAG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0ovfGQkl/b1 --logfile b1/build.log minimac4_4.1.6-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0ovfGQkl/pbuilderrc_iuhC --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0ovfGQkl/b2 --logfile b2/build.log minimac4_4.1.6-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1262288/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -84,7 +116,7 @@ Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libstatgen-dev, libshrinkwrap-dev, libsavvy-dev, libomp-jonathonl-dev, liblzma-dev, libzstd-dev, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19898 files and directories currently installed.) +(Reading database ... 19919 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -199,10 +231,10 @@ Get: 72 http://deb.debian.org/debian forky/main amd64 libstatgen-dev amd64 1.0.15-8 [122 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 36.0 MB in 0s (74.8 MB/s) +Fetched 36.0 MB in 15s (2438 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19919 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. @@ -510,7 +542,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/minimac4-4.1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minimac4_4.1.6-1_source.changes +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/minimac4-4.1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minimac4_4.1.6-1_source.changes dpkg-buildpackage: info: source package minimac4 dpkg-buildpackage: info: source version 4.1.6-1 dpkg-buildpackage: info: source distribution unstable @@ -552,7 +588,7 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (1.7s) +-- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -569,7 +605,7 @@ -- Build files have been written to: /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6' dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minimac4-4.1.6 -B/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -582,17 +618,17 @@ make -f CMakeFiles/minimac4.dir/build.make CMakeFiles/minimac4.dir/build make[3]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' [ 14%] Building CXX object CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o +[ 28%] Building CXX object CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o -MF CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o.d -o CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/dosage_writer.cpp +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -MF CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o.d -o CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/unique_haplotype.cpp [ 42%] Building CXX object CMakeFiles/minimac4.dir/src/input_prep.cpp.o -[ 42%] Building CXX object CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -[ 57%] Building CXX object CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -MF CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o.d -o CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/hidden_markov_model.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/input_prep.cpp.o -MF CMakeFiles/minimac4.dir/src/input_prep.cpp.o.d -o CMakeFiles/minimac4.dir/src/input_prep.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/input_prep.cpp -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -MF CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o.d -o CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/unique_haplotype.cpp -[ 71%] Building CXX object CMakeFiles/minimac4.dir/src/recombination.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/recombination.cpp.o -MF CMakeFiles/minimac4.dir/src/recombination.cpp.o.d -o CMakeFiles/minimac4.dir/src/recombination.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/recombination.cpp -[ 85%] Building CXX object CMakeFiles/minimac4.dir/src/main.cpp.o +[ 71%] Building CXX object CMakeFiles/minimac4.dir/src/main.cpp.o +[ 85%] Building CXX object CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o +[ 85%] Building CXX object CMakeFiles/minimac4.dir/src/recombination.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/main.cpp.o -MF CMakeFiles/minimac4.dir/src/main.cpp.o.d -o CMakeFiles/minimac4.dir/src/main.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/main.cpp +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -MF CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o.d -o CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/hidden_markov_model.cpp +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -DVERSION=\"4.1.6\" -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -std=gnu++11 -MD -MT CMakeFiles/minimac4.dir/src/recombination.cpp.o -MF CMakeFiles/minimac4.dir/src/recombination.cpp.o.d -o CMakeFiles/minimac4.dir/src/recombination.cpp.o -c /build/reproducible-path/minimac4-4.1.6/src/recombination.cpp [100%] Linking CXX executable minimac4 /usr/bin/cmake -E cmake_link_script CMakeFiles/minimac4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/minimac4-4.1.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libStatGen -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/minimac4.dir/link.d CMakeFiles/minimac4.dir/src/dosage_writer.cpp.o CMakeFiles/minimac4.dir/src/hidden_markov_model.cpp.o CMakeFiles/minimac4.dir/src/input_prep.cpp.o CMakeFiles/minimac4.dir/src/recombination.cpp.o CMakeFiles/minimac4.dir/src/unique_haplotype.cpp.o CMakeFiles/minimac4.dir/src/main.cpp.o -o minimac4 -Wl,-Bstatic -lomp -Wl,-Bdynamic -llzma -lzstd -lz @@ -602,10 +638,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu @@ -630,36 +666,36 @@ 2: Test timeout computed to be: 10000000 1: /usr/bin/bcftools 2: /usr/bin/bcftools -1: minimac v4.1.6 -1: 2: minimac v4.1.6 2: -1: Mean Compression Ratio: 0.820455 -1: Min Compression Ratio: 0.590909 -1: Max Compression Ratio: 1.05 +1: minimac v4.1.6 +1: 2: Mean Compression Ratio: 0.770455 2: Min Compression Ratio: 0.590909 2: Max Compression Ratio: 0.95 +1: Mean Compression Ratio: 0.820455 +1: Min Compression Ratio: 0.590909 +1: Max Compression Ratio: 1.05 +2: minimac v4.1.6 +2: 1: minimac v4.1.6 1: 1: Imputing chr20:1-10009927 ... 1: Loading target haplotypes ... -2: minimac v4.1.6 -2: -1: Loading target haplotypes took 0 seconds -1: Loading reference haplotypes ... 2: Imputing chr20:1-10009927 ... 2: Loading target haplotypes ... +1: Loading target haplotypes took 0 seconds +1: Loading reference haplotypes ... 2: Loading target haplotypes took 0 seconds 2: Loading reference haplotypes ... +1: Loading reference haplotypes took 0 seconds +1: Typed sites to imputed sites ratio: 0.903226 (28/31) 2: Loading reference haplotypes took 0 seconds 2: Typed sites to imputed sites ratio: 0.903226 (28/31) 2: Running HMM with 1 threads ... -1: Loading reference haplotypes took 0 seconds -1: Typed sites to imputed sites ratio: 0.903226 (28/31) 1: Running HMM with 1 threads ... -1: Completed 2 of 5 samples 2: Completed 2 of 5 samples +1: Completed 2 of 5 samples 2: Completed 4 of 5 samples 1: Completed 4 of 5 samples 2: Completed 5 of 5 samples @@ -686,17 +722,17 @@ 1: Total time for HMM: 0 seconds 1: Total time for writing output: 0 seconds 1: Total wall time (h:mm:ss): 0:00:00 -1/2 Test #2: haploid_and_diploid_test ......... Passed 0.10 sec -2/2 Test #1: simple_test ...................... Passed 0.11 sec +1/2 Test #2: haploid_and_diploid_test ......... Passed 0.06 sec +2/2 Test #1: simple_test ...................... Passed 0.06 sec 100% tests passed, 0 tests failed out of 2 -Total Test time (real) = 0.11 sec +Total Test time (real) = 0.06 sec make[1]: Leaving directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minimac4/ - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/minimac4-4.1.6/debian/minimac4 AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/minimac4-4.1.6/debian/minimac4 AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minimac4-4.1.6 -B/build/reproducible-path/minimac4-4.1.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -735,12 +771,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2444439/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1262288 and its subdirectories -I: Current time: Tue Sep 30 09:39:06 -12 2025 -I: pbuilder-time-stamp: 1759268346 +I: removing directory /srv/workspace/pbuilder/2444439 and its subdirectories +I: Current time: Tue Nov 3 18:05:46 +14 2026 +I: pbuilder-time-stamp: 1793678746