Diff of the two buildlogs: -- --- b1/build.log 2025-10-13 05:59:24.670625482 +0000 +++ b2/build.log 2025-10-13 06:01:53.906814380 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 15 00:19:14 -12 2026 -I: pbuilder-time-stamp: 1794745154 +I: Current time: Mon Oct 13 19:59:26 +14 2025 +I: pbuilder-time-stamp: 1760335166 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying debian-libs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1624782/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 13 05:59 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='97c1885c019148f6a69eedc5fd6515d5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1624782' - PS1='# ' - PS2='> ' + INVOCATION_ID=705e0c4d66744fb698f7533565cc4a33 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=786954 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OeFZF7wL/pbuilderrc_I7wS --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OeFZF7wL/b1 --logfile b1/build.log metaeuk_7-bba0d80+ds-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OeFZF7wL/pbuilderrc_9h7i --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OeFZF7wL/b2 --logfile b2/build.log metaeuk_7-bba0d80+ds-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1624782/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -192,7 +224,7 @@ Get: 67 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] -Fetched 32.8 MB in 1s (51.3 MB/s) +Fetched 32.8 MB in 2s (14.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -483,7 +515,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metaeuk-7-bba0d80+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaeuk_7-bba0d80+ds-2_source.changes +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metaeuk-7-bba0d80+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaeuk_7-bba0d80+ds-2_source.changes dpkg-buildpackage: info: source package metaeuk dpkg-buildpackage: info: source version 7-bba0d80+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -576,7 +612,7 @@ -- Found OpenMP -- xxd not found, using xxdi.pl instead -- ShellCheck not found --- Configuring done (3.4s) +-- Configuring done (1.8s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -594,7 +630,7 @@ -- Build files have been written to: /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metaeuk-7-bba0d80+ds -B/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -611,143 +647,150 @@ make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" make -f data/CMakeFiles/local-generated.dir/build.make data/CMakeFiles/local-generated.dir/depend -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/data /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake "--color=" make[3]: 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/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version/CMakeFiles/version.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -make -f lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/build.make lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/build -make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +make -f lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -make -f lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/build.make 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'/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -make -f lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -make -f lib/mmseqs/lib/alp/CMakeFiles/alp.dir/build.make lib/mmseqs/lib/alp/CMakeFiles/alp.dir/build +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make -f data/CMakeFiles/local-generated.dir/build.make data/CMakeFiles/local-generated.dir/build make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make[3]: Entering directory 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide.out +[ 3%] Building CXX object lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +[ 3%] Generating ../generated/easypredict.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -MF CMakeFiles/cacode.dir/lambda_calculator.cpp.o.d -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode/lambda_calculator.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode/lubksb.cpp +[ 4%] Generating ../generated/VTML40.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h +[ 4%] Generating ../generated/VTML80.out.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true VTML40.out +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true VTML80.out +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl predictexons.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easypredict.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl VTML80.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl predictexons.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h +[ 4%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl VTML40.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_dynprogprob.cpp +[ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h -[ 5%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_localmaxstatmatrix.cpp -[ 6%] Linking CXX static library libversion.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -[ 6%] Generating ../generated/taxtocontig.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h +[ 5%] Generating ../generated/taxtocontig.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxtocontig.sh +[ 6%] Generating ../generated/blosum62.out.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +[ 6%] Generating ../generated/PAM30.out.h +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -[ 7%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -[ 8%] Generating ../generated/nucleotide.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide.out +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blosum62.out +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true PAM30.out +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_random.cpp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxtocontig.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_sim.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Built target version +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl PAM30.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp -[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h -[ 9%] Generating ../generated/blosum62.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +[ 7%] Building CXX object lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blosum62.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -MF CMakeFiles/cacode.dir/ludcmp.cpp.o.d -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode/ludcmp.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp -[ 9%] Built target local-generated +[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_dynprogprobproto.cpp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h -[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_dynprogproblim.cpp -[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 10%] Generating ../generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true PAM30.out -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alignment_evaluer.cpp -[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl PAM30.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_regression.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp +[ 8%] Built target local-generated +[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_localmaxstat.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_localmaxstatmatrix.cpp +[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h -[ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 9%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_pvalues.cpp +[ 11%] Linking C static library libmicrotar.a +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_sim.cpp +[ 11%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true Library255_may17.lib /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -783,253 +826,246 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 11%] Built target version -[ 12%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 12%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -[ 13%] Linking C static library libmicrotar.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 13%] Generating ../generated/Library255_may17.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -[ 13%] Generating ../generated/libPolished_8.lib.h +[ 12%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_dynprogproblim.cpp +[ 12%] Built target microtar +[ 12%] Building CXX object lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode/nrutil.cpp +[ 12%] Generating ../generated/libPolished_8.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h +[ 13%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl cs219.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp -[ 13%] Built target microtar -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h -[ 14%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -[ 15%] Generating ../generated/cs219.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_basic.cpp -[ 16%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true cs219.lib +[ 13%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h +[ 14%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 17%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl cs219.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true result_viz_prelude.html.zst +[ 14%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h -[ 18%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h +[ 15%] Linking C static library libtinyexpr.a cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h -[ 19%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl K4000.crf > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h -[ 19%] Generating ../generated/easysearch.sh.h +[ 16%] Built target cacode +[ 17%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +[ 17%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp.cpp +[ 18%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easysearch.sh +[ 18%] Built target tinyexpr +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 19%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl K4000.crf > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +[ 18%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_localmaxstatutil.cpp +[ 18%] Built target ksw2 +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h +[ 18%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h +[ 19%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_basic.cpp [ 19%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -[ 19%] Built target ksw2 cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_ioutil.cpp -[ 19%] Built target tinyexpr -make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' [ 19%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h -[ 20%] Generating ../generated/easyrbh.sh.h -[ 21%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h +[ 20%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h -[ 21%] Built target cacode -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h +[ 21%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h [ 21%] Generating ../generated/blastp.sh.h -[ 21%] Generating ../generated/map.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h [ 21%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h +[ 21%] Generating ../generated/map.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true map.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl map.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated [ 21%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl rbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h -[ 22%] Generating ../generated/linclust.sh.h -[ 22%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl rbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +[ 22%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linclust.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp +[ 22%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp [ 22%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true cascaded_clustering.sh -[ 23%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h -[ 24%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h +[ 23%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true update_clustering.sh -[ 25%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 25%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h +[ 24%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createindex.sh +[ 25%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createindex.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h -[ 26%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h +[ 25%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +[ 26%] Generating ../generated/translated_search.sh.h [ 26%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h -[ 27%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h +[ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitdb.sh +[ 27%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated [ 27%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h [ 28%] Generating ../generated/blastn.sh.h -[ 28%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl enrich.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 28%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl enrich.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastn.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp [ 28%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h +[ 28%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h [ 28%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated [ 28%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl databases.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl databases.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h [ 28%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp [ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +[ 28%] Built target generated make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' [ 28%] Built target alp -[ 28%] Built target generated make -f lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build.make lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/depend make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake "--color=" @@ -1037,37 +1073,29 @@ make -f lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build.make lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.cpp -[ 34%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/A3MReader.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1086,8 +1114,28 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1112,22 +1160,6 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -1137,10 +1169,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Main.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1214,9 +1243,8 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Main.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1251,9 +1279,9 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1289,8 +1317,8 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1325,9 +1353,10 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1362,10 +1391,8 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1401,9 +1428,9 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1437,8 +1464,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1472,10 +1501,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1508,11 +1535,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 33%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.cpp +[ 33%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp +[ 34%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.cpp +[ 34%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/A3MReader.cpp +[ 35%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Application.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1545,10 +1582,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 35%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/BaseMatrix.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1581,10 +1621,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 35%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Command.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, @@ -1622,10 +1658,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 36%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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36%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBConcat.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Command.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1660,17 +1692,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 36%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.cpp -[ 37%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.cpp -[ 37%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Debug.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1703,9 +1727,22 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.cpp +[ 37%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.cpp +[ 37%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Debug.cpp +[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1741,7 +1778,8 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1774,10 +1812,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBConcat.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1810,13 +1851,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBConcat.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1849,18 +1887,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MMseqsMPI.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.cpp:1: @@ -1896,10 +1924,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/KSeqWrapper.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/KSeqWrapper.cpp:3: @@ -1935,7 +1961,16 @@ 105 | SeqProf(T first, T second) { | ^ 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-DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MMseqsMPI.cpp +[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.cpp +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1968,8 +2003,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MMseqsMPI.cpp:3: +[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/NucleotideMatrix.cpp +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2046,17 +2082,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/LibraryReader.cpp -[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.cpp -[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SequenceWeights.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.cpp:34: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2090,7 +2117,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.cpp:34: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2123,6 +2153,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/LibraryReader.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -2159,6 +2191,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SequenceWeights.cpp +[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.cpp:1: @@ -2194,14 +2234,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/tantan.cpp [ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Util.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -2239,16 +2273,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Indexer.cpp -[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/IndexBuilder.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/KmerGenerator.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -2322,6 +2352,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/KmerGenerator.cpp +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ [ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Main.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, @@ -2362,14 +2402,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.cpp +[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Main.cpp:1: @@ -2405,14 +2443,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp [ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ReducedMatrix.cpp -[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp -[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.cpp:1: @@ -2448,8 +2480,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -2525,12 +2555,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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-o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp +[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.h:8, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2563,10 +2595,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp +[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/besthitperset.cpp +[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.h:8, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2599,8 +2639,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/besthitperset.cpp +[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:5: @@ -2636,16 +2676,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/combinepvalperset.cpp -[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp -[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp -[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp -[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/besthitperset.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -2715,7 +2745,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2748,6 +2781,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp +[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp +[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -2785,10 +2824,7 @@ [ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2821,6 +2857,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp +[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -2855,10 +2897,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -2893,12 +2931,12 @@ 105 | SeqProf(T first, T second) { | ^ 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp:6: @@ -2934,8 +2972,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -2970,10 +3006,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxmapping.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3007,7 +3041,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3040,10 +3074,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3112,11 +3142,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/taxonomyreport.cpp +[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp +[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3149,8 +3184,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3183,10 +3223,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3219,14 +3261,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3265,10 +3301,6 @@ cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignall.cpp [ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignbykmer.cpp -[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp -[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/apply.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -3308,8 +3340,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/clusthash.cpp +[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.cpp:4: @@ -3346,7 +3378,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignall.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3380,7 +3412,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignall.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3448,6 +3480,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/apply.cpp +[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/clusthash.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/apply.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3559,10 +3595,6 @@ cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convert2fasta.cpp [ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertalignments.cpp -[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertca3m.cpp -[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertkb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convert2fasta.cpp:9: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3631,6 +3663,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertca3m.cpp +[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertmsa.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertca3m.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3666,7 +3704,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertkb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertmsa.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3699,18 +3737,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertmsa.cpp -[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertkb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3743,11 +3771,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/dbtype.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createdb.cpp:8: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3780,9 +3812,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/db2tar.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createdb.cpp:8: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertprofiledb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3816,7 +3852,9 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/db2tar.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/dbtype.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3850,9 +3888,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/dbtype.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/db2tar.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3927,8 +3963,6 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/offsetalignment.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3963,12 +3997,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp -[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp +[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createseqfiledb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4001,8 +4035,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4035,10 +4071,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createseqfiledb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4071,8 +4107,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4105,12 +4143,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp -[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diffseqdbs.cpp:10: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4145,13 +4179,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp [ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractdomains.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4186,8 +4219,13 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractorfs.cpp +[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4254,16 +4292,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object 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-DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filtera3m.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractorfs.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/orftocontig.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4296,11 +4326,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/orftocontig.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractorfs.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4333,8 +4360,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/touchdb.cpp +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filterdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/touchdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4367,8 +4399,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/touchdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filtera3m.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4401,9 +4442,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/makepaddedseqdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filtera3m.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filterdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4436,10 +4478,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/gff2db.cpp -[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -4476,10 +4514,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/makepaddedseqdb.cpp -[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/masksequence.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/renamedbkeys.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4514,8 +4548,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/maskbygff.cpp +[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/masksequence.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/makepaddedseqdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4550,6 +4584,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/maskbygff.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -4590,8 +4626,6 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeclusters.cpp -[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -4628,12 +4662,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd 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CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeresultsbyset.cpp [ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp +[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp -[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2profile.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -4706,12 +4740,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2result.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4747,8 +4780,7 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4781,6 +4813,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2profile.cpp +[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2result.cpp +[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, @@ -4817,7 +4855,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/countkmer.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -4856,11 +4895,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/countkmer.cpp -[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4895,8 +4929,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/prefixid.cpp +[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/countkmer.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4931,12 +4965,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp -[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2neff.cpp -[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4971,8 +4999,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/prefixid.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2neff.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/prefixid.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5005,8 +5035,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/prefixid.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5039,8 +5071,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2neff.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2neff.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5073,8 +5107,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/recoverlongestorf.cpp +[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5109,6 +5147,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/recoverlongestorf.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5143,8 +5183,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util 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CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5229,6 +5255,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2rbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -5267,6 +5295,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] + 65 | dbKeyBuffer.size(); + | ~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/string:56, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:7: +/usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here + 1163 | size() const _GLIBCXX_NOEXCEPT + | ^~~~ +[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2profile.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -5290,9 +5329,27 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2repseq.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2profile.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5309,10 +5366,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -5329,26 +5382,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] - 65 | dbKeyBuffer.size(); - | ~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/15/string:56, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:7: -/usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here - 1163 | size() const _GLIBCXX_NOEXCEPT - | ^~~~ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2repseq.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5381,12 +5416,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractframes.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2profile.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5420,7 +5459,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2repseq.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5453,14 +5493,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sequence2profile.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractframes.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5494,8 +5529,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractframes.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5528,17 +5562,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5571,12 +5600,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitsequence.cpp -[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sequence2profile.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5609,8 +5637,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp +[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp +[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitsequence.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5644,7 +5678,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5677,12 +5711,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizealis.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitsequence.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5715,8 +5745,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/subtractdbs.cpp +[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitsequence.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/subtractdbs.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5749,8 +5787,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeheaders.cpp [ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeresult.cpp [ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o @@ -5789,6 +5825,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/swapresults.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeheaders.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5857,8 +5895,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/swapresults.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizetabs.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5893,12 +5929,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/translatenucs.cpp -[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/translateaa.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, @@ -5935,6 +5965,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/transitivealign.cpp +[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/transitivealign.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5944,6 +5977,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, @@ -6006,12 +6046,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -6117,9 +6151,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 87%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp +[ 88%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/unpackdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/unpackdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6140,6 +6177,12 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp:1: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -6152,13 +6195,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/unpackdb.cpp -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/unpackdb.cpp:1: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -6194,8 +6230,6 @@ cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/versionstring.cpp [ 89%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diskspaceavail.cpp -[ 89%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Cluster.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6230,6 +6264,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 89%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Cluster.cpp +[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/ClusterUpdate.cpp +[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Databases.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diskspaceavail.cpp:4: @@ -6265,16 +6305,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/ClusterUpdate.cpp -[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Databases.cpp -[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linclust.cpp -[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Cluster.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6309,6 +6339,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linclust.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Databases.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6411,12 +6443,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp +[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp +[ 92%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6449,12 +6487,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6487,13 +6524,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyCluster.cpp -[ 92%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6530,6 +6566,10 @@ cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Enrich.cpp [ 93%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linsearch.cpp +[ 93%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Map.cpp +[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Rbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyLinclust.cpp:3: @@ -6565,16 +6605,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp -[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Enrich.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6607,8 +6639,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp +[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -6646,7 +6680,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Map.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6679,8 +6713,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Rbh.cpp:1: @@ -6716,8 +6748,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +[ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyTaxonomy.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/CreateIndex.cpp +[ 96%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/MMseqsBase.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6750,12 +6790,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/MMseqsBase.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6789,7 +6825,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6823,7 +6859,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/MMseqsBase.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6857,7 +6893,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/MMseqsBase.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6903,27 +6939,27 @@ make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make -f 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src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o -MF CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o.d -o CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/TaxToContig.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o -MF CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o.d -o CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/EasyPredict.cpp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/metaeuk.cpp.o -MF CMakeFiles/metaeuk.dir/metaeuk.cpp.o.d -o CMakeFiles/metaeuk.dir/metaeuk.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/metaeuk.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o -MF CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o.d -o CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/reduceredundancy.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/reduceredundancy.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/groupstoacc.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6958,23 +6994,46 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/unitesetstofasta.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/collectoptimalset.cpp:1: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/reduceredundancy.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -6983,6 +7042,10 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -6990,44 +7053,18 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/groupstoacc.cpp:1: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/resultspercontig.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/unitesetstofasta.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7061,8 +7098,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/EasyPredict.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/metaeuk.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7097,7 +7134,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/PredictExons.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/TaxToContig.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7131,8 +7168,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/collectoptimalset.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/EasyPredict.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7167,7 +7204,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/TaxToContig.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/PredictExons.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7201,8 +7238,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/metaeuk.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/resultspercontig.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7244,14 +7280,14 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-6DRGmguk + rm -fr -- /tmp/dh-xdg-rundir-JQlyCg6H create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/metaeuk.substvars debian/metaeuk-examples.substvars rm -fr -- debian/.debhelper/generated/metaeuk/ debian/metaeuk/ debian/tmp/ debian/.debhelper/generated/metaeuk-examples/ debian/metaeuk-examples/ dh_auto_install install -m0755 -d /build/reproducible-path/metaeuk-7-bba0d80\+ds/debian/tmp - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/reproducible-path/metaeuk-7-bba0d80\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/metaeuk-7-bba0d80\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metaeuk-7-bba0d80+ds -B/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -7281,10 +7317,10 @@ install -m0755 -d debian/metaeuk-examples/usr/share/doc/metaeuk-examples install -p -m0644 debian/copyright debian/metaeuk-examples/usr/share/doc/metaeuk-examples/copyright dh_installchangelogs - install -m0755 -d debian/metaeuk-examples/usr/share/doc/metaeuk-examples - install -p -m0644 debian/.debhelper/generated/metaeuk-examples/dh_installchangelogs.dch.trimmed debian/metaeuk-examples/usr/share/doc/metaeuk-examples/changelog.Debian install -m0755 -d debian/metaeuk/usr/share/doc/metaeuk install -p -m0644 debian/.debhelper/generated/metaeuk/dh_installchangelogs.dch.trimmed debian/metaeuk/usr/share/doc/metaeuk/changelog.Debian + install -m0755 -d debian/metaeuk-examples/usr/share/doc/metaeuk-examples + install -p -m0644 debian/.debhelper/generated/metaeuk-examples/dh_installchangelogs.dch.trimmed debian/metaeuk-examples/usr/share/doc/metaeuk-examples/changelog.Debian dh_perl dh_link dh_strip_nondeterminism @@ -7292,8 +7328,8 @@ cd debian/metaeuk cd debian/metaeuk-examples chmod a-x usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian - gzip -9nf usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian chmod a-x usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastp.sh usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh + gzip -9nf usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian gzip -9nf usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastp.sh usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh cd '/build/reproducible-path/metaeuk-7-bba0d80+ds' cd '/build/reproducible-path/metaeuk-7-bba0d80+ds' @@ -7305,8 +7341,8 @@ find debian/metaeuk/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/metaeuk-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/metaeuk -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/metaeuk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/metaeuk-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/metaeuk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/metaeuk/usr/bin/metaeuk @@ -7331,15 +7367,15 @@ debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " + install -m0755 -d debian/metaeuk-examples/DEBIAN + echo misc:Depends= >> debian/metaeuk-examples.substvars + echo misc:Pre-Depends= >> debian/metaeuk-examples.substvars + dpkg-gencontrol -pmetaeuk-examples -ldebian/changelog -Tdebian/metaeuk-examples.substvars -cdebian/control -Pdebian/metaeuk-examples "-Vsimde:Built-Using=simde (= 0.8.2-3), " install -m0755 -d debian/metaeuk/DEBIAN echo misc:Depends= >> debian/metaeuk.substvars echo misc:Pre-Depends= >> debian/metaeuk.substvars install -m0755 -d debian/.debhelper/metaeuk/dbgsym-root/DEBIAN dpkg-gencontrol -pmetaeuk -ldebian/changelog -Tdebian/metaeuk.substvars -cdebian/control -Pdebian/.debhelper/metaeuk/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.2-3), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=metaeuk-dbgsym -DDepends="metaeuk (= \${binary:Version})" -DDescription="debug symbols for metaeuk" -DBuild-Ids=d1ce54835d7dd8100a38403a99a9bb038222d799 -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/metaeuk-examples/DEBIAN - echo misc:Depends= >> debian/metaeuk-examples.substvars - echo misc:Pre-Depends= >> debian/metaeuk-examples.substvars - dpkg-gencontrol -pmetaeuk-examples -ldebian/changelog -Tdebian/metaeuk-examples.substvars -cdebian/control -Pdebian/metaeuk-examples "-Vsimde:Built-Using=simde (= 0.8.2-3), " chmod 0644 -- debian/.debhelper/metaeuk/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmetaeuk -ldebian/changelog -Tdebian/metaeuk.substvars -cdebian/control -Pdebian/metaeuk "-Vsimde:Built-Using=simde (= 0.8.2-3), " chmod 0644 -- debian/metaeuk-examples/DEBIAN/control @@ -7369,12 +7405,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/786954/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1624782 and its subdirectories -I: Current time: Sun Nov 15 00:22:24 -12 2026 -I: pbuilder-time-stamp: 1794745344 +I: removing directory /srv/workspace/pbuilder/786954 and its subdirectories +I: Current time: Mon Oct 13 20:01:53 +14 2025 +I: pbuilder-time-stamp: 1760335313