Diff of the two buildlogs: -- --- b1/build.log 2025-09-20 12:29:44.584421484 +0000 +++ b2/build.log 2025-09-20 12:38:03.601126726 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 23 06:45:15 -12 2026 -I: pbuilder-time-stamp: 1792781115 +I: Current time: Sun Sep 21 02:29:48 +14 2025 +I: pbuilder-time-stamp: 1758371388 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying debian-libs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/989629/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 20 12:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2c0e8e5c9a7c45f786f9395b6989aa84' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='989629' - PS1='# ' - PS2='> ' + INVOCATION_ID=9613ea889bcb486a8af44141dcf71b6d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=432518 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B0Cw1r1S/pbuilderrc_EfAA --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B0Cw1r1S/b1 --logfile b1/build.log metaeuk_7-bba0d80+ds-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B0Cw1r1S/pbuilderrc_eA3m --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B0Cw1r1S/b2 --logfile b2/build.log metaeuk_7-bba0d80+ds-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/989629/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -191,7 +223,7 @@ Get: 65 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] -Fetched 32.5 MB in 6s (5309 kB/s) +Fetched 32.5 MB in 0s (68.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -474,7 +506,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metaeuk-7-bba0d80+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaeuk_7-bba0d80+ds-1_source.changes +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metaeuk-7-bba0d80+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaeuk_7-bba0d80+ds-1_source.changes dpkg-buildpackage: info: source package metaeuk dpkg-buildpackage: info: source version 7-bba0d80+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -567,8 +603,8 @@ -- Found OpenMP -- xxd not found, using xxdi.pl instead -- ShellCheck not found --- Configuring done (4.7s) --- Generating done (0.1s) +-- Configuring done (16.5s) +-- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -584,7 +620,7 @@ -- Build files have been written to: /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metaeuk-7-bba0d80+ds -B/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -593,279 +629,192 @@ make -f lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/build.make lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/build.make lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/mmseqs/lib/alp/CMakeFiles/alp.dir/build.make lib/mmseqs/lib/alp/CMakeFiles/alp.dir/depend -make -f lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/depend -make -f lib/mmseqs/data/CMakeFiles/generated.dir/build.make lib/mmseqs/data/CMakeFiles/generated.dir/depend make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" -make -f lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" make[3]: 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'/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/data /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/data /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/data/CMakeFiles/local-generated.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-7-bba0d80+ds /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode/nrutil.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_ioutil.cpp +[ 11%] Generating ../generated/taxtocontig.sh.h +[ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +[ 11%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_sim.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_pvalues.cpp -[ 11%] Generating ../generated/Library255_may17.lib.h -[ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide.out -[ 12%] Generating ../generated/blosum62.out.h +[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true VTML40.out +[ 12%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easypredict.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxtocontig.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl predictexons.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h -[ 11%] Generating ../generated/VTML40.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/njn_localmaxstatutil.cpp -[ 13%] Generating ../generated/cs219.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxtocontig.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 13%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 11%] Generating ../generated/PAM30.out.h -[ 13%] Generating ../generated/libPolished_8.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true VTML40.out -[ 14%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_basic.cpp +[ 12%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated +[ 12%] Generating ../generated/Library255_may17.lib.h +[ 12%] Generating ../generated/libPolished_8.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true PAM30.out -[ 14%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl predictexons.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h +[ 13%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true cs219.lib -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h -[ 15%] Generating ../generated/easycluster.sh.h -[ 16%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl VTML80.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl VTML80.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxtocontig.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h +[ 14%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blosum62.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h -make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blosum62.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl VTML40.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h +[ 15%] Generating ../generated/krona_prelude.html.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl PAM30.out > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl cs219.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h -[ 17%] Linking CXX static library libversion.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl K4000.crf > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp -[ 17%] Built target local-generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h -[ 18%] Generating ../generated/blastp.sh.h -[ 18%] Generating ../generated/easytaxonomy.sh.h -[ 18%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 20%] Generating ../generated/easyrbh.sh.h -[ 19%] Generating ../generated/map.sh.h -[ 19%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easyrbh.sh -[ 20%] Generating ../generated/clustering.sh.h -[ 20%] Generating ../generated/linclust.sh.h -[ 20%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linclust.sh -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h +[ 16%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/data && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h +[ 17%] Linking CXX static library libversion.a +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -[ 21%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl map.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h -[ 21%] Built target version -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl rbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linclust.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h -[ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchtargetprofile.sh -[ 23%] Generating ../generated/createindex.sh.h +[ 18%] Linking C static library libmicrotar.a +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 18%] Built target local-generated /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -901,217 +850,300 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true K4000.crf +[ 18%] Generating ../generated/easysearch.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easysearch.sh +[ 18%] Generating ../generated/easycluster.sh.h +[ 18%] Built target version +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl K4000.crf > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easycluster.sh +[ 19%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h +[ 19%] Built target microtar +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createindex.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h -[ 23%] Generating ../generated/multihitsearch.sh.h -[ 24%] Linking C static library libmicrotar.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easytaxonomy.sh +[ 20%] Generating ../generated/easyrbh.sh.h +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +[ 20%] Built target ksw2 +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h +[ 20%] Generating ../generated/map.sh.h +[ 20%] Generating ../generated/blastp.sh.h +[ 20%] Generating ../generated/blastpgp.sh.h +[ 21%] Generating ../generated/linclust.sh.h +[ 21%] Generating ../generated/rbh.sh.h +[ 21%] Built target cacode +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl rbh.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h +[ 21%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl map.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linclust.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true clustering.sh +[ 21%] Generating ../generated/cascaded_clustering.sh.h +[ 22%] Generating ../generated/update_clustering.sh.h +[ 23%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +[ 24%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 25%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h +[ 25%] Generating ../generated/createindex.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h [ 25%] Generating ../generated/createtaxdb.sh.h -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitdb.sh -[ 26%] Generating ../generated/translated_search.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h +[ 26%] Generating ../generated/multihitdb.sh.h +[ 27%] Generating ../generated/translated_search.sh.h +[ 27%] Generating ../generated/taxpercontig.sh.h +[ 27%] Built target tinyexpr +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 26%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl enrich.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h -[ 27%] Generating ../generated/blastn.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true tsv2exprofiledb.sh -[ 27%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createindex.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h +[ 27%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp -[ 27%] Generating ../generated/databases.sh.h -[ 27%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true databases.sh -[ 27%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h +[ 28%] Generating ../generated/blastn.sh.h +[ 28%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl enrich.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +[ 28%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastn.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true taxonomy.sh +[ 28%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h +[ 28%] Generating ../generated/databases.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h +[ 28%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl blastn.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl databases.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h > /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp cd 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/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h -[ 27%] Built target microtar -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h -[ 28%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h.tmp /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -[ 28%] Built target generated -make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' [ 28%] Built target alp +make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' +[ 28%] Built target generated make -f lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build.make lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/depend make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/tantan.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/UniprotKB.cpp -[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Util.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Command.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1146,8 +1178,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/BandedNucleotideAligner.cpp:7: +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1180,7 +1211,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.cpp:1: +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/KSeqWrapper.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1215,8 +1248,9 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBConcat.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.cpp:34: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1250,8 +1284,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1285,10 +1321,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1323,9 +1356,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Main.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1360,10 +1391,9 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Main.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1397,8 +1427,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/KSeqWrapper.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1434,9 +1466,7 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Main.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBConcat.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1453,14 +1483,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp:1: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -1477,6 +1499,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.cpp:1: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -1509,8 +1537,9 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1531,9 +1560,23 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1541,27 +1584,15 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -1579,11 +1610,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1617,9 +1645,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1653,11 +1679,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1692,9 +1714,18 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.cpp:4: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Alignment.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Main.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1727,12 +1758,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/rescorediagonal.cpp:1: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -1762,10 +1787,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/UniprotKB.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1799,7 +1824,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1834,9 +1862,10 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1870,10 +1899,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.cpp:34: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Application.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1907,8 +1934,9 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Application.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1928,6 +1956,14 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/ClusteringAlgorithms.cpp:1: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -1941,12 +1977,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Util.cpp:3: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -1978,9 +2008,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2014,7 +2042,11 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2039,27 +2071,27 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -2075,6 +2107,8 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ +[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ExtendedSubstitutionMatrix.cpp /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { @@ -2084,12 +2118,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Util.cpp /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -2121,9 +2159,7 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2156,14 +2192,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2196,15 +2234,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2237,14 +2280,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.cpp [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.cpp -[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -2284,11 +2321,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Main.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2321,13 +2355,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ReducedMatrix.cpp -[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Main.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Util.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2360,30 +2390,26 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ReducedMatrix.cpp +[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp -[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp -[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2416,11 +2442,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/combinepvalperset.cpp +[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2437,9 +2468,11 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -2453,6 +2486,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/Prefiltering.cpp:1: @@ -2488,10 +2523,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp +[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/addtaxonomy.cpp +[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2524,8 +2566,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxdb.cpp +[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxseqdb.cpp +[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2558,16 +2609,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/addtaxonomy.cpp -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.h:8, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/besthitperset.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2601,7 +2644,11 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.h:8, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2634,11 +2681,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o +[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxonomy.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2671,10 +2719,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp +[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxmapping.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2707,12 +2758,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxdb.cpp -[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxseqdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2746,10 +2793,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2782,11 +2826,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2819,34 +2860,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp +[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2913,8 +2936,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2948,8 +2973,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2982,8 +3006,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxonomy.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3016,12 +3042,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convert2fasta.cpp -[ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignall.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3055,7 +3079,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3088,10 +3112,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertalignments.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3125,7 +3147,11 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createtaxdb.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3159,7 +3185,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/apply.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3192,8 +3219,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignbykmer.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignall.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3228,10 +3257,11 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmersearch.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3264,8 +3294,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3298,9 +3330,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/apply.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3333,13 +3369,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertca3m.cpp +[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertalignments.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/clusthash.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignall.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3372,17 +3411,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertkb.cpp -[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertmsa.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/apply.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3415,9 +3445,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertca3m.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/compress.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3451,7 +3482,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3485,10 +3516,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertalignments.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3522,7 +3550,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/clusthash.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3556,7 +3587,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/compress.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convert2fasta.cpp:9: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3590,7 +3621,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertkb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/alignbykmer.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3657,10 +3689,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/convertkb.cpp +[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, @@ -3776,10 +3806,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/offsetalignment.cpp +[ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createseqfiledb.cpp [ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/db2tar.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createdb.cpp:8: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3812,9 +3848,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createdb.cpp:8: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/db2tar.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3847,6 +3883,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, @@ -3883,12 +3921,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp +[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp +[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/indexdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/offsetalignment.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3921,10 +3959,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp +[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createseqfiledb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/indexdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3958,7 +4000,9 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createseqfiledb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3992,7 +4036,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createsubdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4025,10 +4069,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp +[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractdomains.cpp +[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractorfs.cpp +[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/touchdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4061,16 +4114,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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| NuclAA(const NuclAA &value) { | ^ @@ -4103,14 +4148,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/touchdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractdomains.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diffseqdbs.cpp:10: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4143,10 +4182,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filtera3m.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createtsv.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/view.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4179,8 +4216,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4215,12 +4250,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/orftocontig.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractdomains.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4254,10 +4285,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBWriter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractorfs.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4324,12 +4352,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filtera3m.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractorfs.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/orftocontig.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4362,10 +4388,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filterdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/gff2db.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4398,9 +4430,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4433,14 +4474,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp +[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/gff2db.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/filtera3m.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4579,14 +4622,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp -[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/maskbygff.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeresultsbyset.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4619,19 +4658,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2profile.cpp -[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4667,7 +4698,7 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeresultsbyset.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/maskbygff.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4700,13 +4731,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/countkmer.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/IndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergedbs.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4739,12 +4767,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/mergeclusters.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4777,6 +4803,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp +[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, @@ -4784,6 +4822,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -4813,10 +4852,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2neff.cpp +[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp +[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/recoverlongestorf.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/countkmer.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2profile.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4849,10 +4893,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2dnamsa.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp +[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2msa.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2profile.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2result.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4885,12 +4937,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2rbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/msa2result.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/countkmer.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4923,14 +4973,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2neff.cpp -[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp -[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/recoverlongestorf.cpp +[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2profile.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4963,10 +5009,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/prefixid.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/recoverlongestorf.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5000,7 +5044,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5033,10 +5077,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/profile2seq.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/prefixid.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5104,7 +5146,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/recoverlongestorf.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5137,18 +5179,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/pairaln.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5183,8 +5217,8 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2rbh.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5217,12 +5251,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp -[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractframes.cpp /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] 65 | dbKeyBuffer.size(); @@ -5234,10 +5262,8 @@ | ^~~~ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2msa.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2dnamsa.cpp:6: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5271,8 +5297,11 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2msa.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5305,12 +5334,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.cpp +[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2rbh.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2profile.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5343,8 +5376,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/setextendeddbtype.cpp +[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2repseq.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5380,8 +5413,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2stats.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5414,12 +5447,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractframes.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/result2profile.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5452,8 +5483,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/reverseseq.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5486,12 +5522,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp -[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp -[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitsequence.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/extractframes.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5526,6 +5556,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5561,7 +5595,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sequence2profile.cpp:5: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5594,6 +5631,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeresult.cpp +[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/subtractdbs.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitdb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5629,10 +5676,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/ProfileStates.h:11, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/CSProfile.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/sortresult.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5665,14 +5709,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/transitivealign.cpp -[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/translatenucs.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizealis.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5749,12 +5783,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2db.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/splitsequence.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5787,14 +5817,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/translateaa.cpp -[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeresult.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5827,8 +5851,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +[ 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/summarizeresult.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/subtractdbs.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5895,8 +5931,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/unpackdb.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/transitivealign.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5930,7 +5968,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2db.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5964,9 +6002,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/swapresults.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6002,8 +6039,7 @@ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.h:6, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/translatenucs.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/swapresults.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6031,16 +6067,15 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ +[ 88%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tar2db.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/transitivealign.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6074,7 +6109,10 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/tsv2db.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment/Matcher.h:15, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Orf.h:6, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/translatenucs.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6144,18 +6182,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linclust.cpp +[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp +[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Databases.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diskspaceavail.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6268,12 +6301,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linsearch.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Cluster.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6306,8 +6335,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +[ 93%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +[ 93%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Map.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linclust.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6341,7 +6380,11 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6374,10 +6417,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Map.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Databases.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6410,11 +6451,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Rbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linclust.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6447,9 +6485,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Rbh.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util/diskspaceavail.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6483,11 +6523,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Enrich.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6520,15 +6556,40 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp [ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linsearch.cpp:1: +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -6557,28 +6618,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp -In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Linsearch.cpp:1: -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -6596,11 +6635,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6667,12 +6703,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/CreateIndex.cpp -[ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyTaxonomy.cpp -[ 96%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/MMseqsBase.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Rbh.cpp:1: @@ -6708,10 +6738,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/CreateIndex.cpp +[ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/MMseqsBase.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6745,7 +6779,7 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6847,7 +6881,9 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Sequence.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/DBReader.h:13, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/workflow/Search.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6893,27 +6929,26 @@ make[3]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metaeuk.dir/build.make src/CMakeFiles/metaeuk.dir/build make[3]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' -[ 96%] Building CXX object src/CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o -[ 96%] Building CXX object 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-I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o -MF CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o.d -o CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/reduceredundancy.cpp +cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons 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/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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src/CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o -MF CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o.d -o CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/PredictExons.cpp cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o -MF CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o.d -o CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/EasyPredict.cpp -[100%] Building CXX object src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o cd /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-7-bba0d80+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o -MF CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o.d -o CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o -c /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/TaxToContig.cpp In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/TaxToContig.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/resultspercontig.cpp:2: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6948,7 +6983,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/unitesetstofasta.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/metaeuk.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6982,8 +7017,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/EasyPredict.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/collectoptimalset.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7017,8 +7052,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/PredictExons.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/reduceredundancy.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7052,8 +7087,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/metaeuk.cpp:4: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/EasyPredict.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7088,7 +7123,7 @@ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/collectoptimalset.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/groupstoacc.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7122,8 +7157,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/reduceredundancy.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/TaxToContig.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7157,7 +7192,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/resultspercontig.cpp:2: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/unitesetstofasta.cpp:1: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7191,8 +7227,8 @@ | ^ /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/Parameters.h:16, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/commons/LocalParameters.h:4, - from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/exonpredictor/groupstoacc.cpp:1: + from /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/FileUtil.h:10, + from /build/reproducible-path/metaeuk-7-bba0d80+ds/src/workflow/PredictExons.cpp:4: /build/reproducible-path/metaeuk-7-bba0d80+ds/lib/mmseqs/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7234,14 +7270,14 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-CHP3Hjwq + rm -fr -- /tmp/dh-xdg-rundir-7B5kFYDI create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/metaeuk.substvars debian/metaeuk-examples.substvars rm -fr -- debian/.debhelper/generated/metaeuk/ debian/metaeuk/ debian/tmp/ debian/.debhelper/generated/metaeuk-examples/ debian/metaeuk-examples/ dh_auto_install install -m0755 -d /build/reproducible-path/metaeuk-7-bba0d80\+ds/debian/tmp - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/metaeuk-7-bba0d80\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/metaeuk-7-bba0d80\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metaeuk-7-bba0d80+ds -B/build/reproducible-path/metaeuk-7-bba0d80+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -7283,20 +7319,20 @@ cd debian/metaeuk-examples chmod a-x usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian chmod a-x usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastp.sh usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh - gzip -9nf usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastp.sh usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh gzip -9nf usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian + gzip -9nf usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastp.sh usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh cd '/build/reproducible-path/metaeuk-7-bba0d80+ds' cd '/build/reproducible-path/metaeuk-7-bba0d80+ds' dh_fixperms - find debian/metaeuk ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/metaeuk-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/metaeuk/usr/share/doc -type f -a -true -a ! -regex 'debian/metaeuk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/metaeuk ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/metaeuk-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/metaeuk-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/metaeuk/usr/share/doc -type f -a -true -a ! -regex 'debian/metaeuk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/metaeuk-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/metaeuk/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/metaeuk-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/metaeuk -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/metaeuk-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/metaeuk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x - find debian/metaeuk-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_dwz -a dwz -- debian/metaeuk/usr/bin/metaeuk @@ -7330,28 +7366,28 @@ echo misc:Pre-Depends= >> debian/metaeuk.substvars install -m0755 -d debian/.debhelper/metaeuk/dbgsym-root/DEBIAN dpkg-gencontrol -pmetaeuk -ldebian/changelog -Tdebian/metaeuk.substvars -cdebian/control -Pdebian/.debhelper/metaeuk/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.2-3), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=metaeuk-dbgsym "-DDepends=metaeuk (= \${binary:Version})" "-DDescription=debug symbols for metaeuk" -DBuild-Ids=75157ef0a68d427f20bf9b4545601e2226737e72 -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/metaeuk-examples/DEBIAN/control chmod 0644 -- debian/.debhelper/metaeuk/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmetaeuk -ldebian/changelog -Tdebian/metaeuk.substvars -cdebian/control -Pdebian/metaeuk "-Vsimde:Built-Using=simde (= 0.8.2-3), " chmod 0644 -- debian/metaeuk/DEBIAN/control + chmod 0644 -- debian/metaeuk-examples/DEBIAN/control make[1]: Leaving directory '/build/reproducible-path/metaeuk-7-bba0d80+ds' dh_md5sums install -m0755 -d debian/metaeuk/DEBIAN + cd debian/metaeuk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/metaeuk-examples/DEBIAN cd debian/metaeuk-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/metaeuk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/metaeuk-examples/DEBIAN/md5sums chmod 0644 -- debian/metaeuk/DEBIAN/md5sums install -m0755 -d debian/.debhelper/metaeuk/dbgsym-root/DEBIAN cd debian/.debhelper/metaeuk/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/metaeuk/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/metaeuk .. dpkg-deb --root-owner-group --build debian/.debhelper/metaeuk/dbgsym-root .. dpkg-deb --root-owner-group --build debian/metaeuk-examples .. -dpkg-deb: building package 'metaeuk-dbgsym' in '../metaeuk-dbgsym_7-bba0d80+ds-1_amd64.deb'. -dpkg-deb: building package 'metaeuk' in '../metaeuk_7-bba0d80+ds-1_amd64.deb'. + dpkg-deb --root-owner-group --build debian/metaeuk .. dpkg-deb: building package 'metaeuk-examples' in '../metaeuk-examples_7-bba0d80+ds-1_all.deb'. +dpkg-deb: building package 'metaeuk' in '../metaeuk_7-bba0d80+ds-1_amd64.deb'. +dpkg-deb: building package 'metaeuk-dbgsym' in '../metaeuk-dbgsym_7-bba0d80+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../metaeuk_7-bba0d80+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaeuk_7-bba0d80+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -7359,12 +7395,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/432518/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/989629 and its subdirectories -I: Current time: Fri Oct 23 06:52:44 -12 2026 -I: pbuilder-time-stamp: 1792781564 +I: removing directory /srv/workspace/pbuilder/432518 and its subdirectories +I: Current time: Sun Sep 21 02:38:03 +14 2025 +I: pbuilder-time-stamp: 1758371883