Diff of the two buildlogs: -- --- b1/build.log 2025-10-17 09:30:35.724113170 +0000 +++ b2/build.log 2025-10-17 09:34:42.780428878 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Nov 19 03:51:43 -12 2026 -I: pbuilder-time-stamp: 1795103503 +I: Current time: Fri Oct 17 23:30:37 +14 2025 +I: pbuilder-time-stamp: 1760693437 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying no-binary-in-examples.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3269306/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 17 09:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='55efd26754e94ad5b4d400d9c444985d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3269306' - PS1='# ' - PS2='> ' + INVOCATION_ID=899f3c2217f040bab594d093b777cbf3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1330251 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Zao4AIpC/pbuilderrc_RV4y --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Zao4AIpC/b1 --logfile b1/build.log ltrsift_1.0.2-10.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Zao4AIpC/pbuilderrc_DS8H --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Zao4AIpC/b2 --logfile b2/build.log ltrsift_1.0.2-10.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3269306/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -336,7 +368,7 @@ Get: 219 http://deb.debian.org/debian forky/main amd64 libxdamage-dev amd64 1:1.1.6-1+b2 [15.3 kB] Get: 220 http://deb.debian.org/debian forky/main amd64 libxml2-utils amd64 2.14.6+dfsg-0.1 [123 kB] Get: 221 http://deb.debian.org/debian forky/main amd64 libgtk2.0-dev amd64 2.24.33-8 [799 kB] -Fetched 79.9 MB in 1s (75.2 MB/s) +Fetched 79.9 MB in 3s (29.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -1057,8 +1089,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 19 15:52:49 UTC 2026. -Universal Time is now: Thu Nov 19 15:52:49 UTC 2026. +Local time is now: Fri Oct 17 09:32:59 UTC 2025. +Universal Time is now: Fri Oct 17 09:32:59 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:amd64 (49.0-1) ... @@ -1254,7 +1286,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ltrsift-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ltrsift_1.0.2-10_source.changes +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ltrsift-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ltrsift_1.0.2-10_source.changes dpkg-buildpackage: info: source package ltrsift dpkg-buildpackage: info: source version 1.0.2-10 dpkg-buildpackage: info: source distribution unstable @@ -1280,39 +1316,39 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ltrsift-1.0.2' dh_auto_build -- x32=no 64bit=yes errorcheck=no - make -j42 INSTALL="install --strip-program=true" x32=no 64bit=yes errorcheck=no + make -j40 INSTALL="install --strip-program=true" x32=no 64bit=yes errorcheck=no make[2]: Entering directory '/build/reproducible-path/ltrsift-1.0.2' [create bin] test -d bin || mkdir -p bin [create obj] -[create obj/src] test -d obj || mkdir -p obj +[create obj/src] test -d obj/src || mkdir -p obj/src [compile obj/src/default_style.o] cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/default_style.c -o obj/src/default_style.o [compile obj/src/error.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/error.c -o obj/src/error.o [compile obj/src/gtk_blastn_params.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_blastn_params.c -o obj/src/gtk_blastn_params.o [compile obj/src/gtk_blastn_params_refseq.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_blastn_params_refseq.c -o obj/src/gtk_blastn_params_refseq.o [compile obj/src/gtk_label_close.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_label_close.c -o obj/src/gtk_label_close.o [compile obj/src/gtk_ltr_assistant.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_ltr_assistant.c -o obj/src/gtk_ltr_assistant.o +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/error.c -o obj/src/error.o +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_blastn_params.c -o obj/src/gtk_blastn_params.o [compile obj/src/gtk_ltr_families.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_ltr_families.c -o obj/src/gtk_ltr_families.o [compile obj/src/gtk_ltr_filter.o] +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_blastn_params_refseq.c -o obj/src/gtk_blastn_params_refseq.o +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_label_close.c -o obj/src/gtk_label_close.o +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_ltr_assistant.c -o obj/src/gtk_ltr_assistant.o +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_ltr_families.c -o obj/src/gtk_ltr_families.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_ltr_filter.c -o obj/src/gtk_ltr_filter.o [compile obj/src/gtk_project_settings.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_project_settings.c -o obj/src/gtk_project_settings.o [compile obj/src/menubar.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/menubar.c -o obj/src/menubar.o +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/gtk_project_settings.c -o obj/src/gtk_project_settings.o [compile obj/src/preprocess_stream.o] +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/menubar.c -o obj/src/menubar.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/preprocess_stream.c -o obj/src/preprocess_stream.o [compile obj/src/preprocess_visitor.o] -cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/preprocess_visitor.c -o obj/src/preprocess_visitor.o [compile obj/src/project_wizard.o] +cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/preprocess_visitor.c -o obj/src/preprocess_visitor.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/project_wizard.c -o obj/src/project_wizard.o [compile obj/src/script_filter_stream.o] cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ltrsift-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -O3 -Wdate-time -D_FORTIFY_SOURCE=2 `pkg-config --cflags --libs gtk+-2.0 gthread-2.0` -I/usr/include/genometools -I/usr/include/genometools -I/src -lgenometools -L/usr/lib -Wl,-z,relro -Wl,-z,now src/script_filter_stream.c -o obj/src/script_filter_stream.o @@ -1334,21 +1370,15 @@ from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/ltrsift.h:22, - from src/error.h:22, - from src/menubar.c:20: + from src/gtk_ltr_assistant.h:24, + from src/gtk_ltr_assistant.c:20: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, - from /usr/include/glib-2.0/gio/gioenums.h:30, - from /usr/include/glib-2.0/gio/giotypes.h:30, - from /usr/include/glib-2.0/gio/gio.h:28, - from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, - from /usr/include/gtk-2.0/gdk/gdk.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:32: + from src/gtk_ltr_assistant.h:23: /usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here 725 | { | ^ @@ -1374,15 +1404,41 @@ from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/gtk_ltr_assistant.h:24, - from src/gtk_ltr_assistant.c:20: + from src/gtk_blastn_params_refseq.h:24, + from src/gtk_blastn_params_refseq.c:19: +/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] + 236 | void gtk_type_init (GTypeDebugFlags debug_flags); + | ^~~~ +In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, + from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, + from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, + from /usr/include/gtk-2.0/gtk/gtkbin.h:35, + from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, + from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, + from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:33, + from src/ltrsift.h:22, + from src/error.h:22, + from src/gtk_ltr_families.c:20: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, - from src/gtk_ltr_assistant.h:23: + from /usr/include/glib-2.0/gio/gioenums.h:30, + from /usr/include/glib-2.0/gio/giotypes.h:30, + from /usr/include/glib-2.0/gio/gio.h:28, + from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, + from /usr/include/gtk-2.0/gdk/gdk.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:32: +/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here + 725 | { + | ^ +In file included from /usr/include/glib-2.0/gobject/gobject.h:26, + from /usr/include/glib-2.0/gobject/gbinding.h:31, + from /usr/include/glib-2.0/glib-object.h:24, + from src/gtk_blastn_params_refseq.h:23: /usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here 725 | { | ^ @@ -1406,18 +1462,25 @@ from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:33, + from src/ltrsift.h:22, + from src/error.h:22, + from src/gtk_ltr_filter.c:19: +/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] + 236 | void gtk_type_init (GTypeDebugFlags debug_flags); + | ^~~~ +In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, + from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, + from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, + from /usr/include/gtk-2.0/gtk/gtkbin.h:35, + from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, + from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, + from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:33, from src/gtk_label_close.h:24, from src/gtk_label_close.c:19: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ -In file included from /usr/include/glib-2.0/gobject/gobject.h:26, - from /usr/include/glib-2.0/gobject/gbinding.h:31, - from /usr/include/glib-2.0/glib-object.h:24, - from src/gtk_label_close.h:23: -/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here - 725 | { - | ^ In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, @@ -1444,40 +1507,13 @@ /usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here 725 | { | ^ -In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, - from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, - from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, - from /usr/include/gtk-2.0/gtk/gtkbin.h:35, - from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, - from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, - from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/gtk_blastn_params_refseq.h:24, - from src/gtk_blastn_params_refseq.c:19: -/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] - 236 | void gtk_type_init (GTypeDebugFlags debug_flags); - | ^~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, - from src/gtk_blastn_params_refseq.h:23: + from src/gtk_label_close.h:23: /usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here 725 | { | ^ -In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, - from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, - from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, - from /usr/include/gtk-2.0/gtk/gtkbin.h:35, - from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, - from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, - from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/ltrsift.h:22, - from src/error.h:22, - from src/gtk_ltr_filter.c:19: -/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] - 236 | void gtk_type_init (GTypeDebugFlags debug_flags); - | ^~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, @@ -1498,12 +1534,18 @@ from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/ltrsift.h:22, - from src/statusbar.h:22, - from src/statusbar.c:20: + from src/gtk_blastn_params.h:24, + from src/gtk_blastn_params.c:19: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ +In file included from /usr/include/glib-2.0/gobject/gobject.h:26, + from /usr/include/glib-2.0/gobject/gbinding.h:31, + from /usr/include/glib-2.0/glib-object.h:24, + from src/gtk_blastn_params.h:23: +/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here + 725 | { + | ^ In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, @@ -1513,8 +1555,8 @@ from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:33, from src/ltrsift.h:22, - from src/error.h:22, - from src/project_wizard.c:19: + from src/statusbar.h:22, + from src/statusbar.c:20: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ @@ -1530,18 +1572,6 @@ /usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here 725 | { | ^ -In file included from /usr/include/glib-2.0/gobject/gobject.h:26, - from /usr/include/glib-2.0/gobject/gbinding.h:31, - from /usr/include/glib-2.0/glib-object.h:24, - from /usr/include/glib-2.0/gio/gioenums.h:30, - from /usr/include/glib-2.0/gio/giotypes.h:30, - from /usr/include/glib-2.0/gio/gio.h:28, - from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, - from /usr/include/gtk-2.0/gdk/gdk.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:32: -/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here - 725 | { - | ^ In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, @@ -1552,7 +1582,7 @@ from /usr/include/gtk-2.0/gtk/gtk.h:33, from src/ltrsift.h:22, from src/error.h:22, - from src/ltrsift.c:19: + from src/menubar.c:20: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ @@ -1578,7 +1608,7 @@ from /usr/include/gtk-2.0/gtk/gtk.h:33, from src/ltrsift.h:22, from src/error.h:22, - from src/support.c:20: + from src/project_wizard.c:19: /usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] 236 | void gtk_type_init (GTypeDebugFlags debug_flags); | ^~~~ @@ -1614,9 +1644,22 @@ /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ +In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, + from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, + from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, + from /usr/include/gtk-2.0/gtk/gtk.h:126: +/usr/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] + 73 | GTimeVal last_popdown; + | ^~~~~~~~ In file included from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, - from /usr/include/glib-2.0/gobject/gbinding.h:30: + from src/gtk_ltr_assistant.h:22: +/usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here + 580 | struct _GTimeVal + | ^~~~~~~~~ +In file included from /usr/include/glib-2.0/glib/galloca.h:34, + from /usr/include/glib-2.0/glib.h:32, + from src/gtk_blastn_params_refseq.h:22: /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ @@ -1629,10 +1672,36 @@ | ^~~~~~~~ In file included from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, - from src/gtk_ltr_assistant.h:22: + from /usr/include/glib-2.0/gobject/gbinding.h:30: /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ +In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, + from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, + from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, + from /usr/include/gtk-2.0/gtk/gtkbin.h:35, + from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, + from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, + from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:33, + from src/ltrsift.h:22, + from src/error.h:22, + from src/ltrsift.c:19: +/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] + 236 | void gtk_type_init (GTypeDebugFlags debug_flags); + | ^~~~ +In file included from /usr/include/glib-2.0/gobject/gobject.h:26, + from /usr/include/glib-2.0/gobject/gbinding.h:31, + from /usr/include/glib-2.0/glib-object.h:24, + from /usr/include/glib-2.0/gio/gioenums.h:30, + from /usr/include/glib-2.0/gio/giotypes.h:30, + from /usr/include/glib-2.0/gio/gio.h:28, + from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, + from /usr/include/gtk-2.0/gdk/gdk.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:32: +/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here + 725 | { + | ^ In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, @@ -1642,10 +1711,36 @@ | ^~~~~~~~ In file included from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, - from src/gtk_label_close.h:22: + from /usr/include/glib-2.0/gobject/gbinding.h:30: /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ +In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, + from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, + from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, + from /usr/include/gtk-2.0/gtk/gtkbin.h:35, + from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, + from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, + from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:33, + from src/ltrsift.h:22, + from src/error.h:22, + from src/support.c:20: +/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] + 236 | void gtk_type_init (GTypeDebugFlags debug_flags); + | ^~~~ +In file included from /usr/include/glib-2.0/gobject/gobject.h:26, + from /usr/include/glib-2.0/gobject/gbinding.h:31, + from /usr/include/glib-2.0/glib-object.h:24, + from /usr/include/glib-2.0/gio/gioenums.h:30, + from /usr/include/glib-2.0/gio/giotypes.h:30, + from /usr/include/glib-2.0/gio/gio.h:28, + from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, + from /usr/include/gtk-2.0/gdk/gdk.h:32, + from /usr/include/gtk-2.0/gtk/gtk.h:32: +/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here + 725 | { + | ^ In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, @@ -1668,7 +1763,7 @@ | ^~~~~~~~ In file included from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, - from src/gtk_blastn_params_refseq.h:22: + from src/gtk_label_close.h:22: /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ @@ -1679,6 +1774,12 @@ /usr/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] 73 | GTimeVal last_popdown; | ^~~~~~~~ +In file included from /usr/include/glib-2.0/glib/galloca.h:34, + from /usr/include/glib-2.0/glib.h:32, + from /usr/include/glib-2.0/gobject/gbinding.h:30: +/usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here + 580 | struct _GTimeVal + | ^~~~~~~~~ In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, @@ -1688,10 +1789,39 @@ | ^~~~~~~~ In file included from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, - from /usr/include/glib-2.0/gobject/gbinding.h:30: + from src/gtk_blastn_params.h:22: /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ +src/gtk_ltr_families.c: In function 'gtk_ltr_families_refseq_match': +src/gtk_ltr_families.c:1551:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] + 1551 | if (!g_thread_create(refseq_match_cands_start, (gpointer) threaddata, FALSE, + | ^~ +In file included from /usr/include/glib-2.0/glib.h:115: +/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here + 102 | GThread *g_thread_create (GThreadFunc func, + | ^~~~~~~~~~~~~~~ +src/gtk_ltr_families.c: In function 'gtk_ltr_families_orffind': +src/gtk_ltr_families.c:1648:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] + 1648 | if (!g_thread_create(orffind_start, (gpointer) threaddata, FALSE, + | ^~ +/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here + 102 | GThread *g_thread_create (GThreadFunc func, + | ^~~~~~~~~~~~~~~ +src/gtk_ltr_families.c: In function 'notebook_toolbar_search_cand_group_clicked': +src/gtk_ltr_families.c:2873:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] + 2873 | if (!g_thread_create(classify_nodes_start, (gpointer) threaddata, FALSE, + | ^~ +/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here + 102 | GThread *g_thread_create (GThreadFunc func, + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, + from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, + from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, + from /usr/include/gtk-2.0/gtk/gtk.h:126: +/usr/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] + 73 | GTimeVal last_popdown; + | ^~~~~~~~ In file included from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, from /usr/include/glib-2.0/gobject/gbinding.h:30: @@ -1737,52 +1867,14 @@ /usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here 580 | struct _GTimeVal | ^~~~~~~~~ -In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, - from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, - from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, - from /usr/include/gtk-2.0/gtk/gtkbin.h:35, - from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, - from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, - from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/ltrsift.h:22, - from src/error.h:22, - from src/gtk_ltr_families.c:20: -/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] - 236 | void gtk_type_init (GTypeDebugFlags debug_flags); - | ^~~~ -In file included from /usr/include/gtk-2.0/gtk/gtkobject.h:37, - from /usr/include/gtk-2.0/gtk/gtkwidget.h:36, - from /usr/include/gtk-2.0/gtk/gtkcontainer.h:35, - from /usr/include/gtk-2.0/gtk/gtkbin.h:35, - from /usr/include/gtk-2.0/gtk/gtkwindow.h:36, - from /usr/include/gtk-2.0/gtk/gtkdialog.h:35, - from /usr/include/gtk-2.0/gtk/gtkaboutdialog.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:33, - from src/gtk_blastn_params.h:24, - from src/gtk_blastn_params.c:19: -/usr/include/gtk-2.0/gtk/gtktypeutils.h:236:1: warning: 'GTypeDebugFlags' is deprecated [-Wdeprecated-declarations] - 236 | void gtk_type_init (GTypeDebugFlags debug_flags); - | ^~~~ -In file included from /usr/include/glib-2.0/gobject/gobject.h:26, - from /usr/include/glib-2.0/gobject/gbinding.h:31, - from /usr/include/glib-2.0/glib-object.h:24, - from src/gtk_blastn_params.h:23: -/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here - 725 | { - | ^ -In file included from /usr/include/glib-2.0/gobject/gobject.h:26, - from /usr/include/glib-2.0/gobject/gbinding.h:31, - from /usr/include/glib-2.0/glib-object.h:24, - from /usr/include/glib-2.0/gio/gioenums.h:30, - from /usr/include/glib-2.0/gio/giotypes.h:30, - from /usr/include/glib-2.0/gio/gio.h:28, - from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, - from /usr/include/gtk-2.0/gdk/gdk.h:32, - from /usr/include/gtk-2.0/gtk/gtk.h:32: -/usr/include/glib-2.0/gobject/gtype.h:725:1: note: declared here - 725 | { - | ^ +src/project_wizard.c: In function 'project_wizard_apply': +src/project_wizard.c:292:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] + 292 | if (!g_thread_create(project_wizard_start_job, (gpointer) threaddata, FALSE, + | ^~ +In file included from /usr/include/glib-2.0/glib.h:115: +/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here + 102 | GThread *g_thread_create (GThreadFunc func, + | ^~~~~~~~~~~~~~~ src/menubar.c: In function 'first_save_and_reload': src/menubar.c:875:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] 875 | if (!g_thread_create(save_and_reload_data_start, (gpointer) threaddata, @@ -1819,14 +1911,6 @@ /usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here 102 | GThread *g_thread_create (GThreadFunc func, | ^~~~~~~~~~~~~~~ -src/project_wizard.c: In function 'project_wizard_apply': -src/project_wizard.c:292:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] - 292 | if (!g_thread_create(project_wizard_start_job, (gpointer) threaddata, FALSE, - | ^~ -In file included from /usr/include/glib-2.0/glib.h:115: -/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here - 102 | GThread *g_thread_create (GThreadFunc func, - | ^~~~~~~~~~~~~~~ In file included from /usr/lib/x86_64-linux-gnu/glib-2.0/include/glibconfig.h:9, from /usr/include/glib-2.0/glib/gtypes.h:34: src/ltrsift.c: In function 'main': @@ -1852,54 +1936,6 @@ /usr/include/glib-2.0/glib/deprecated/gthread.h:271:10: note: declared here 271 | void g_thread_init (gpointer vtable); | ^~~~~~~~~~~~~ -In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, - from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, - from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, - from /usr/include/gtk-2.0/gtk/gtk.h:126: -/usr/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] - 73 | GTimeVal last_popdown; - | ^~~~~~~~ -In file included from /usr/include/glib-2.0/glib/galloca.h:34, - from /usr/include/glib-2.0/glib.h:32, - from src/gtk_blastn_params.h:22: -/usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here - 580 | struct _GTimeVal - | ^~~~~~~~~ -In file included from /usr/include/gtk-2.0/gtk/gtktoolitem.h:31, - from /usr/include/gtk-2.0/gtk/gtktoolbutton.h:30, - from /usr/include/gtk-2.0/gtk/gtkmenutoolbutton.h:30, - from /usr/include/gtk-2.0/gtk/gtk.h:126: -/usr/include/gtk-2.0/gtk/gtktooltips.h:73:3: warning: 'GTimeVal' is deprecated: Use 'GDateTime' instead [-Wdeprecated-declarations] - 73 | GTimeVal last_popdown; - | ^~~~~~~~ -In file included from /usr/include/glib-2.0/glib/galloca.h:34, - from /usr/include/glib-2.0/glib.h:32, - from /usr/include/glib-2.0/gobject/gbinding.h:30: -/usr/include/glib-2.0/glib/gtypes.h:580:8: note: declared here - 580 | struct _GTimeVal - | ^~~~~~~~~ -src/gtk_ltr_families.c: In function 'gtk_ltr_families_refseq_match': -src/gtk_ltr_families.c:1551:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] - 1551 | if (!g_thread_create(refseq_match_cands_start, (gpointer) threaddata, FALSE, - | ^~ -In file included from /usr/include/glib-2.0/glib.h:115: -/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here - 102 | GThread *g_thread_create (GThreadFunc func, - | ^~~~~~~~~~~~~~~ -src/gtk_ltr_families.c: In function 'gtk_ltr_families_orffind': -src/gtk_ltr_families.c:1648:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] - 1648 | if (!g_thread_create(orffind_start, (gpointer) threaddata, FALSE, - | ^~ -/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here - 102 | GThread *g_thread_create (GThreadFunc func, - | ^~~~~~~~~~~~~~~ -src/gtk_ltr_families.c: In function 'notebook_toolbar_search_cand_group_clicked': -src/gtk_ltr_families.c:2873:3: warning: 'g_thread_create' is deprecated: Use 'g_thread_new' instead [-Wdeprecated-declarations] - 2873 | if (!g_thread_create(classify_nodes_start, (gpointer) threaddata, FALSE, - | ^~ -/usr/include/glib-2.0/glib/deprecated/gthread.h:102:10: note: declared here - 102 | GThread *g_thread_create (GThreadFunc func, - | ^~~~~~~~~~~~~~~ src/gtk_ltr_assistant.c: In function 'gtk_ltr_assistant_get_match_params': src/gtk_ltr_assistant.c:853:27: warning: ' -x ' directive writing 4 bytes into a region of size between 1 and 8192 [-Wformat-overflow=] 853 | sprintf(last_call, "%s -x %d", last_call, xgapped); @@ -2142,7 +2178,7 @@ gunzip sample_data/dmel-2L-chromosome-r5.8.fasta.gz gzip -n -9 sample_data/dmel-2L-chromosome-r5.8.fasta dh_auto_install -- 64bit=yes errorcheck=no prefix=/build/reproducible-path/ltrsift-1.0.2/debian/tmp/usr - make -j42 install DESTDIR=/build/reproducible-path/ltrsift-1.0.2/debian/ltrsift AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" 64bit=yes errorcheck=no prefix=/build/reproducible-path/ltrsift-1.0.2/debian/tmp/usr + make -j40 install DESTDIR=/build/reproducible-path/ltrsift-1.0.2/debian/ltrsift AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" 64bit=yes errorcheck=no prefix=/build/reproducible-path/ltrsift-1.0.2/debian/tmp/usr make[2]: Entering directory '/build/reproducible-path/ltrsift-1.0.2' test -d /build/reproducible-path/ltrsift-1.0.2/debian/tmp/usr/bin || mkdir -p /build/reproducible-path/ltrsift-1.0.2/debian/tmp/usr/bin cp bin/* /build/reproducible-path/ltrsift-1.0.2/debian/tmp/usr/bin @@ -2190,12 +2226,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1330251/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3269306 and its subdirectories -I: Current time: Thu Nov 19 03:53:35 -12 2026 -I: pbuilder-time-stamp: 1795103615 +I: removing directory /srv/workspace/pbuilder/1330251 and its subdirectories +I: Current time: Fri Oct 17 23:34:42 +14 2025 +I: pbuilder-time-stamp: 1760693682