Diff of the two buildlogs: -- --- b1/build.log 2025-10-11 15:25:29.765664010 +0000 +++ b2/build.log 2025-10-11 15:27:24.801806272 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 11 03:23:41 -12 2025 -I: pbuilder-time-stamp: 1760196221 +I: Current time: Sat Nov 14 11:48:31 +14 2026 +I: pbuilder-time-stamp: 1794606511 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3521384/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 13 21:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='df1300ff85f142c9896a4fa06dcc79e3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3521384' - PS1='# ' - PS2='> ' + INVOCATION_ID=2cdb856a0f5f479a99317355b7cc7b19 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4016757 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LsP0pFT6/pbuilderrc_OccW --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LsP0pFT6/b1 --logfile b1/build.log ivar_1.4.4+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LsP0pFT6/pbuilderrc_qxTD --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LsP0pFT6/b2 --logfile b2/build.log ivar_1.4.4+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3521384/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -203,7 +235,7 @@ Get: 91 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libhts-dev amd64 1.22.1+ds2-1 [1807 kB] -Fetched 31.2 MB in 1s (44.5 MB/s) +Fetched 31.2 MB in 1s (45.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -590,7 +622,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -677,7 +713,7 @@ config.status: creating config.h config.status: executing depfiles commands dh_auto_build - make -j12 + make -j16 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' @@ -687,20 +723,19 @@ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp COLLECT_GCC=g++ -Using built-in specs. -Using built-in specs. -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp -Using built-in specs. OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa -COLLECT_GCC=g++ OFFLOAD_TARGET_DEFAULT=1 +Target: x86_64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 +Thread model: posix +Supported LTO compression algorithms: zlibCOLLECT_GCC=g++ + zstd +gcc version 15.2.0 (Debian 15.2.0-4) OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu @@ -708,49 +743,48 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) -Target: x86_64-linux-gnu -COLLECT_GCC=g++ -COLLECT_GCC=g++ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -vCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map -I=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format- .security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-ma -Irch=x86-64' + .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -dumpbase-ext -quiet .cpp -v -mtune=generic -I -march=x86-64 . -g -I -g .. -O2 -imultiarch -Wdate-time x86_64-linux-gnu -Wformat=1 -D_GNU_SOURCE -Werror=format-security -D -Wall HAVE_CONFIG_H -Wextra -D -Werror _FORTIFY_SOURCE=2 -version ivar.cpp -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -quiet -fstack-protector-strong -dumpbase -fstack-clash-protection ivar.cpp -fcf-protection=full -dumpbase-ext -fasynchronous-unwind-tables .cpp -mtune=generic -o -march=x86-64 /tmp/ccBVil0d.s -g -g + -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccjSzEbt.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp +Using built-in specs. +Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa -OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa -OFFLOAD_TARGET_DEFAULT=1 OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 15.2.0 (Debian 15.2.0-4) +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp +Using built-in specs. +COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa +OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --progrConfigured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs am-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-in--enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --progrOFFLOAD_TARGET_DEFAULT=1 -am-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-cluded-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-Target: x86_64-linux-gnu -debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disdebug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-sysConfigured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs able-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-sys--enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --progrtem-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-mtem-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-mam-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-inultilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gccultilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcccluded-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx--15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-default-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaultdebug 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapThread model: posix +=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-Supported LTO compression algorithms: zlibsecurity' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generi zstdc' '-march=x86-64' gcc version 15.2.0 (Debian 15.2.0-4) -Thread model: posix -gcc version 15.2.0 (Debian 15.2.0-4) -Supported LTO compression algorithms: zlib zstd -gcc version 15.2.0 (Debian 15.2.0-4) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/cckDzxVn.s Using built-in specs. -GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - COLLECT_GCC=g++ -Using built-in specs. -GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu @@ -782,24 +806,22 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbaseUsing built-in specs. - call_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strongCOLLECT_GCC=g++ - -fstack-clash-protectionOFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccjAvdKs.s +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) - -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccSEafFl.s -GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccz0zmke.s -GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +Using built-in specs. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 @@ -808,42 +830,57 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) -ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" -#include "..." search starts here: -#include <...> search starts here: - . - .. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/include/c++/15 - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccRkI3Ry.s - /usr/include/x86_64-linux-gnu/c++/15 - /usr/include/c++/15/backward - /usr/lib/gcc/x86_64-linux-gnu/15/include - /usr/local/include - /usr/include/x86_64-linux-gnu - /usr/include -End of search list. -GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp +Using built-in specs. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa +security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtuGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ne=generic' '-march=x86-64' + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccBADWtH.s OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" +--enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --progrignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" +am-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-mignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" +ultilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gccignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" +-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaultUsing built-in specs. +ed --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" with-build-config=bootstrap-lto-lean --enable-link-serialization=3 Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 15.2.0 (Debian 15.2.0-4) -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" +Supported LTO compression algorithms: zlibignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" + zstd ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" +gcc version 15.2.0 (Debian 15.2.0-4) +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" #include "..." search starts here: @@ -851,39 +888,47 @@ . .. /usr/include/c++/15 +#include "..." search starts here: /usr/include/x86_64-linux-gnu/c++/15 - /usr/include/c++/15/backward - /usr/lib/gcc/x86_64-linux-gnu/15/include - /usr/local/include - /usr/include/x86_64-linux-gnu - /usr/include -End of search list. -=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" -ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" #include "..." search starts here: -security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccWqlWSr.s #include <...> search starts here: + /usr/include/c++/15/backward +#include <...> search starts here: + . . + /usr/lib/gcc/x86_64-linux-gnu/15/include .. + .. + /usr/local/include + /usr/include/c++/15 /usr/include/c++/15 /usr/include/x86_64-linux-gnu/c++/15 + /usr/include/x86_64-linux-gnu /usr/include/c++/15/backward + /usr/include/x86_64-linux-gnu/c++/15 + /usr/include /usr/lib/gcc/x86_64-linux-gnu/15/include + /usr/include/c++/15/backward /usr/local/include +End of search list. + /usr/include/x86_64-linux-gnu + /usr/lib/gcc/x86_64-linux-gnu/15/include + /usr/include + /usr/local/include +End of search list. /usr/include/x86_64-linux-gnu /usr/include End of search list. +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' +Using built-in specs. + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/cc7qbbJp.s ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" #include "..." search starts here: -Using built-in specs. #include <...> search starts here: . .. @@ -895,7 +940,6 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 @@ -904,26 +948,30 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) -GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-COLLECT_GCC=g++ +COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccCJySRA.s OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) -security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plusCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map -quiet=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/cc7CGKNv.s - -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -Dignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccdLhYUn.s +ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" - _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp#include "..." search starts here: - -dumpbase-ext#include <...> search starts here: - .cpp . +#include "..." search starts here: +#include <...> search starts here: + . .. /usr/include/c++/15 /usr/include/x86_64-linux-gnu/c++/15 @@ -933,20 +981,33 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. - -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccduKOod.s +Using built-in specs. +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa +OFFLOAD_TARGET_DEFAULT=1 +Target: x86_64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 +Thread model: posix +Supported LTO compression algorithms: zlib zstdGNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, +gcc version 15.2.0 (Debian 15.2.0-4) GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccUTpOrD.s +ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" -#include "..." search starts here: +GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, #include "..." search starts here: #include <...> search starts here: . .. +GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + /usr/include/c++/15 /usr/include/x86_64-linux-gnu/c++/15 /usr/include/c++/15/backward @@ -955,11 +1016,6 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" @@ -978,10 +1034,11 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP +GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -Compiler executable checksum: ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" @@ -999,15 +1056,22 @@ /usr/include End of search list. GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) - compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" +GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 #include "..." search starts here: #include <...> search starts here: . @@ -1020,15 +1084,12 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -Compiler executable checksum: Compiler executable checksum: GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" -54#include "..." search starts here: +#include "..." search starts here: #include <...> search starts here: . .. @@ -1040,21 +1101,11 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -23dc75bfc89ee0e623c203bc71e80c5423dc75bfc89ee0e623c203bc71e80c - -Compiler executable checksum: 5423dc75bfc89eCompiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -e0e623c203bc71e80c -Compiler executable checksum: Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -54GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -23dc75bfc8Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -9ee0e623GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) +GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP -c2GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -03ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" -bc71e80c +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" @@ -1065,20 +1116,25 @@ .. /usr/include/c++/15 /usr/include/x86_64-linux-gnu/c++/15 + /usr/include/c++/15/backward + /usr/lib/gcc/x86_64-linux-gnu/15/include ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" - /usr/include/c++/15/backward ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" -#include "..." search starts here: - /usr/lib/gcc/x86_64-linux-gnu/15/include /usr/local/include - /usr/include/x86_64-linux-gnu +GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) + compiled by GNU C version 15.2.0, /usr/include/x86_64-linux-gnu /usr/include End of search list. +GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" +#include "..." search starts here: #include <...> search starts here: . +ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" .. /usr/include/c++/15 /usr/include/x86_64-linux-gnu/c++/15 @@ -1088,31 +1144,18 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -5423dc75bfc89ee0e623c203bc71e80c -Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o alignment.o /tmp/ccZuoHCr.s -GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 -COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'alignment.' -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp -Using built-in specs. -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa -OFFLOAD_TARGET_DEFAULT=1 -Target: x86_64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 15.2.0 (Debian 15.2.0-4) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccxTTRNB.s +ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" GNU C++17 (Debian 15.2.0-4) version 15.2.0 (x86_64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/../../../../x86_64-linux-gnu/include" +#include "..." search starts here: +#include <...> search starts here: + . + .. ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/15/include-fixed/x86_64-linux-gnu" @@ -1130,45 +1173,9 @@ /usr/include/x86_64-linux-gnu /usr/include End of search list. -Compiler executable checksum: 5423dc75bfc89ee0e623c203bc71e80c -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o get_masked_amplicons.o /tmp/ccRkI3Ry.s -GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'call_variants.' +COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'allele_functions.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o primer_bed.o /tmp/ccz0zmke.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o ref_seq.o /tmp/ccdLhYUn.s GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'primer_bed.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ref_seq.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o get_common_variants.o /tmp/cc7qbbJp.s +GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o suffix_tree.o /tmp/cc4RqUkx.s -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o ref_seq.o /tmp/ccxTTRNB.s + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o suffix_tree.o /tmp/ccmtgZ4D.s GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o ivar.o /tmp/ccjSzEbt.s GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ref_seq.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'get_common_variants.' +COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.' COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'suffix_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o call_consensus_pileup.o /tmp/ccAk8JlN.s -GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o trim_primer_quality.o /tmp/ccgtdUfS.s + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o call_consensus_pileup.o /tmp/ccBVil0d.s GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'call_consensus_pileup.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o primer_bed.o /tmp/cck5JuBO.s +GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 +COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'primer_bed.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o trim_primer_quality.o /tmp/cc3D1Qk7.s +GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'trim_primer_quality.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' - /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o parse_gff.o /tmp/ccduKOod.s + /usr/bin/x86_64-linux-gnu-as -v -I . -I .. --gdwarf-5 --64 -o parse_gff.o /tmp/ccCJySRA.s GNU assembler version 2.45 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ @@ -1257,7 +1293,7 @@ COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.' - /usr/libexec/gcc/x86_64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccvRpzba.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o + /usr/libexec/gcc/x86_64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccmTgjSn.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making all in tests @@ -1380,7 +1416,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - make -j12 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no + make -j16 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' @@ -1398,7 +1434,7 @@ COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/15/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/15/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.' - /usr/libexec/gcc/x86_64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/cc0B3WiZ.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o + /usr/libexec/gcc/x86_64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccHibGT3.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. @@ -1434,7 +1470,7 @@ if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi -mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) +mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0775 (rwxrwxr-x) to 0664 (rw-rw-r--) make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_fixperms dh_missing @@ -1456,12 +1492,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4016757/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3521384 and its subdirectories -I: Current time: Sat Oct 11 03:25:29 -12 2025 -I: pbuilder-time-stamp: 1760196329 +I: removing directory /srv/workspace/pbuilder/4016757 and its subdirectories +I: Current time: Sat Nov 14 11:50:24 +14 2026 +I: pbuilder-time-stamp: 1794606624