Diff of the two buildlogs: -- --- b1/build.log 2025-11-21 19:51:33.409170518 +0000 +++ b2/build.log 2025-11-21 19:54:40.397366894 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 21 07:48:19 -12 2025 -I: pbuilder-time-stamp: 1763754499 +I: Current time: Fri Dec 25 16:14:34 +14 2026 +I: pbuilder-time-stamp: 1798164874 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/932825/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 25 02:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='3f97e963a99d44b39d1c5d8e1507c0f1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='932825' - PS1='# ' - PS2='> ' + INVOCATION_ID=079eb1708fdf4206b1eb06d691e1f70b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1861906 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.L78kzGAP/pbuilderrc_dqqr --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.L78kzGAP/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.L78kzGAP/pbuilderrc_Du5q --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.L78kzGAP/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/932825/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -286,7 +318,7 @@ Get: 166 http://deb.debian.org/debian forky/main amd64 libfml0 amd64 0.1+git20221215.85f159e-1 [70.1 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libfml-dev amd64 0.1+git20221215.85f159e-1 [82.0 kB] -Fetched 226 MB in 31s (7327 kB/s) +Fetched 226 MB in 18s (12.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -1172,7 +1204,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1218,7 +1254,7 @@ dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=40 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar openjdk version "21.0.9" 2025-10-21 OpenJDK Runtime Environment (build 21.0.9+10-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.9+10-Debian-1, mixed mode, sharing) @@ -1226,18 +1262,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.806 secs. -The client will now receive all logging from the daemon (pid: 983723). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-983723.out.log +An attempt to start the daemon took 0.825 secs. +The client will now receive all logging from the daemon (pid: 1902243). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1902243.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 40 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1522a2ae -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1522a2ae -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e9456fe +Using 42 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d272e80 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d272e80 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@771cef22 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@686b2b01 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@30b6a1b9 Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1254,20 +1290,20 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d8d5c60 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@12be37e9 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e9456fe -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6d747266 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@4854f8f5 -:compileJava (Thread[#83,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@771cef22 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@73c731d1 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@188fa88a +:compileJava (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.003 secs. -Up-to-date check for task ':compileJava' took 0.011 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 0.014 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#83,Task worker for ':',5,main]) completed. Took 0.693 secs. -:buildFermiLib (Thread[#83,Task worker for ':',5,main]) started. +:compileJava (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.796 secs. +:buildFermiLib (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Up-to-date check for task ':buildFermiLib' took 0.001 secs. It is not up-to-date because: @@ -1279,141 +1315,34 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/x86_64-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[#83,Task worker for ':',5,main]) completed. Took 0.237 secs. -:processResources (Thread[#83,Task worker for ':',5,main]) started. +:buildFermiLib (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.332 secs. +:processResources (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#83,Task worker for ':',5,main]) completed. Took 0.001 secs. -:classes (Thread[#115,Task worker for ':' Thread 33,5,main]) started. +:processResources (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. +:classes (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#115,Task worker for ':' Thread 33,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#115,Task worker for ':' Thread 33,5,main]) started. +:classes (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[#115,Task worker for ':' Thread 33,5,main]) completed. Took 0.1 secs. -:jar (Thread[#115,Task worker for ':' Thread 33,5,main]) started. +:debianMavenPom (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.129 secs. +:jar (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.004 secs. It is not up-to-date because: No history is available. -:jar (Thread[#115,Task worker for ':' Thread 33,5,main]) completed. Took 0.032 secs. - -BUILD SUCCESSFUL in 6s -4 actionable tasks: 4 executed - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' -# The shared lib should be looked for in its build directory. -LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test - mkdir -p .gradle/init.d - cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=40 test -openjdk version "21.0.9" 2025-10-21 -OpenJDK Runtime Environment (build 21.0.9+10-Debian-1) -OpenJDK 64-Bit Server VM (build 21.0.9+10-Debian-1, mixed mode, sharing) -Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native -To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. -Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.627 secs. -The client will now receive all logging from the daemon (pid: 985618). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-985618.out.log -Daemon will be stopped at the end of the build stopping after processing -Closing daemon's stdin at end of input. -The daemon will no longer process any standard input. -Using 40 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7eddcb42 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7eddcb42 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@282ff698 -Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3154c7 -Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. -Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. -Included projects: [root project 'gatk-fermilite'] - Keep-alive timer started - Adding Debian repository to project 'gatk-fermilite' -Parallel execution is an incubating feature. -Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. - Adding Maven pom generation to project 'gatk-fermilite' - Linking the generated javadoc to the system JDK API documentation -All projects evaluated. -Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@25d4e888 -Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@282ff698 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5445f819 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@49c8ec2c -:compileJava (Thread[#84,Task worker for ':' Thread 2,5,main]) started. -:compileJava -Putting task artifact state for task ':compileJava' into context took 0.006 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.037 secs). -:compileJava UP-TO-DATE -:compileJava (Thread[#84,Task worker for ':' Thread 2,5,main]) completed. Took 0.154 secs. -:buildFermiLib (Thread[#84,Task worker for ':' Thread 2,5,main]) started. -:buildFermiLib -Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.002 secs). -:buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[#84,Task worker for ':' Thread 2,5,main]) completed. Took 0.004 secs. -:processResources (Thread[#84,Task worker for ':' Thread 2,5,main]) started. -:processResources -Putting task artifact state for task ':processResources' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found -Skipping task ':processResources' as it has no source files and no previous output files. -:processResources NO-SOURCE -:processResources (Thread[#84,Task worker for ':' Thread 2,5,main]) completed. Took 0.001 secs. -:classes (Thread[#84,Task worker for ':' Thread 2,5,main]) started. -:classes -Skipping task ':classes' as it has no actions. -:classes UP-TO-DATE -:classes (Thread[#84,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#114,Task worker for ':' Thread 32,5,main]) started. -:compileTestJava -Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@309d527e - Loading the Maven rules... - Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian - Passing through org.beanshell:bsh:jar:debian - Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 0.334 secs. It is not up-to-date because: - No history is available. -All input files are considered out-of-date for incremental task ':compileTestJava'. -Compiling with JDK Java compiler API. -:compileTestJava (Thread[#114,Task worker for ':' Thread 32,5,main]) completed. Took 0.808 secs. -:processTestResources (Thread[#114,Task worker for ':' Thread 32,5,main]) started. -:processTestResources -Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found -Skipping task ':processTestResources' as it has no source files and no previous output files. -:processTestResources NO-SOURCE -:processTestResources (Thread[#114,Task worker for ':' Thread 32,5,main]) completed. Took 0.002 secs. -:testClasses (Thread[#114,Task worker for ':' Thread 32,5,main]) started. -:testClasses -Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#114,Task worker for ':' Thread 32,5,main]) completed. Took 0.0 secs. -:test (Thread[#114,Task worker for ':' Thread 32,5,main]) started. -:test -Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.043 secs. It is not up-to-date because: - No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath11466175050399816362txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 1' -Gradle Test Executor 1 started executing tests. -Gradle Test Executor 1 finished executing tests. -Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.006 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test -Generating HTML test report... -Finished generating test html results (0.016 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[#114,Task worker for ':' Thread 32,5,main]) completed. Took 0.837 secs. +:jar (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.037 secs. BUILD SUCCESSFUL in 5s -4 actionable tasks: 2 executed, 2 up-to-date -make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' +4 actionable tasks: 4 executed create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install @@ -1446,12 +1375,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1861906/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/932825 and its subdirectories -I: Current time: Fri Nov 21 07:51:33 -12 2025 -I: pbuilder-time-stamp: 1763754693 +I: removing directory /srv/workspace/pbuilder/1861906 and its subdirectories +I: Current time: Fri Dec 25 16:17:39 +14 2026 +I: pbuilder-time-stamp: 1798165059