Diff of the two buildlogs: -- --- b1/build.log 2025-10-07 05:46:47.749186740 +0000 +++ b2/build.log 2025-10-07 06:16:19.515204050 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Oct 6 17:21:42 -12 2025 -I: pbuilder-time-stamp: 1759814502 +I: Current time: Tue Nov 10 02:09:49 +14 2026 +I: pbuilder-time-stamp: 1794226189 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -31,53 +31,85 @@ dpkg-source: info: applying overriding_testReferenceBasesByRegion.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/497978/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 9 12:10 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0b71b3855af64c9783ae42db811dbd83' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='497978' - PS1='# ' - PS2='> ' + INVOCATION_ID=18619c4d28d84a1ba8b81294cc2deaa1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1184020 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yFEeaJ6X/pbuilderrc_fXpu --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yFEeaJ6X/b1 --logfile b1/build.log artemis_18.2.0+dfsg-5.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yFEeaJ6X/pbuilderrc_UmX5 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yFEeaJ6X/b2 --logfile b2/build.log artemis_18.2.0+dfsg-5.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/497978/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -612,7 +644,7 @@ Get: 443 http://deb.debian.org/debian forky/main amd64 maven all 3.9.9-1 [19.7 kB] Get: 444 http://deb.debian.org/debian forky/main amd64 maven-repo-helper all 1.12 [136 kB] Get: 445 http://deb.debian.org/debian forky/main amd64 maven-debian-helper all 2.6.9 [104 kB] -Fetched 387 MB in 1min 21s (4799 kB/s) +Fetched 387 MB in 28s (13.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -2065,8 +2097,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Oct 7 05:26:40 UTC 2025. -Universal Time is now: Tue Oct 7 05:26:40 UTC 2025. +Local time is now: Mon Nov 9 12:15:25 UTC 2026. +Universal Time is now: Mon Nov 9 12:15:25 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2675,7 +2707,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-5_source.changes +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-5_source.changes dpkg-buildpackage: info: source package artemis dpkg-buildpackage: info: source version 18.2.0+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -2779,8 +2815,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 14.635 s -[INFO] Finished at: 2025-10-06T17:27:54-12:00 +[INFO] Total time: 47.910 s +[INFO] Finished at: 2026-11-10T02:20:21+14:00 [INFO] ------------------------------------------------------------------------ # Now, 4 jars are meant to be created: they are similar to each other but # do not exactly have the same contents. We design this with the pom.xml file, @@ -2853,36 +2889,38 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.9 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Running uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.431 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.113 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest -[INFO] Running uk.ac.sanger.artemis.io.LocationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 s - in uk.ac.sanger.artemis.io.LocationTest -[INFO] Running uk.ac.sanger.artemis.io.GffToEMBLTest -Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/Pf3D7_01_02_v3.gff.gz.embl.gz -Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test.gff.gz.embl.gz -Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test_boundary.gff.gz.embl.gz -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.85 s - in uk.ac.sanger.artemis.io.GffToEMBLTest -[INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.667 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest -[INFO] Running uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest -[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.085 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest -[INFO] Running uk.ac.sanger.artemis.io.GFF3EncoderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest -[INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.52 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Running uk.ac.sanger.artemis.io.GFFTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.94 s - in uk.ac.sanger.artemis.io.GFFTest +[INFO] Running uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.281 s - in uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.353 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Running uk.ac.sanger.artemis.sequence.BasesTest +[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.197 s - in uk.ac.sanger.artemis.sequence.BasesTest +[INFO] Running uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.227 s - in uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Running uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.126 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.112 s - in uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Running uk.ac.sanger.artemis.FeatureTest +[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 22.368 s - in uk.ac.sanger.artemis.FeatureTest +[INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.122 s - in uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.057 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest +[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.049 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.065 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.729 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest +[INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.058 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest [INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.07 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest -[INFO] Running uk.ac.sanger.artemis.components.RunInterProSearchTest -17:34:08.321 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong -17:34:08.337 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong -17:34:08.350 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.866 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.118 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest +[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest +[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest [INFO] Running uk.ac.sanger.artemis.components.alignment.BamUtilsTest testGetExistingIndexFileForFtpCram(): This test creates index files and may be slow to complete testGetExistingIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server @@ -2890,45 +2928,43 @@ testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testCreateIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.135 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest -[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.122 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest -[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.064 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.117 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest +[INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest +[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.568 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest [INFO] Running uk.ac.sanger.artemis.components.EditMenuTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.121 s - in uk.ac.sanger.artemis.components.EditMenuTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.099 s - in uk.ac.sanger.artemis.components.EditMenuTest [INFO] Running uk.ac.sanger.artemis.components.DbfetchEntrySourceTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.056 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest -[INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.082 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.954 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.673 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest +[INFO] Running uk.ac.sanger.artemis.components.RunInterProSearchTest +02:31:44.946 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong +02:31:44.966 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong +02:31:44.981 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.432 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest [INFO] Running uk.ac.sanger.artemis.editor.EvidenceViewerTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest -[INFO] Running uk.ac.sanger.artemis.FeatureTest -[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 30.709 s - in uk.ac.sanger.artemis.FeatureTest -[INFO] Running uk.ac.sanger.artemis.ComparisonDataFactoryTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.512 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest -[INFO] Running uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.159 s - in uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.053 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest -[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.185 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.054 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.308 s - in uk.ac.sanger.artemis.plot.UserPlotTest -[INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.165 s - in uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.859 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Running uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.904 s - in uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Running uk.ac.sanger.artemis.sequence.BasesTest -[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.191 s - in uk.ac.sanger.artemis.sequence.BasesTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest +[INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.307 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest +[INFO] Running uk.ac.sanger.artemis.io.LineGroupCacheTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.851 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest +[INFO] Running uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Running uk.ac.sanger.artemis.io.GFFTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.822 s - in uk.ac.sanger.artemis.io.GFFTest +[INFO] Running uk.ac.sanger.artemis.io.LocationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.143 s - in uk.ac.sanger.artemis.io.LocationTest +[INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.111 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Running uk.ac.sanger.artemis.io.SimpleDocumentEntryTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.426 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest +[INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.715 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Running uk.ac.sanger.artemis.io.GffToEMBLTest +Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/Pf3D7_01_02_v3.gff.gz.embl.gz +Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test.gff.gz.embl.gz +Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test_boundary.gff.gz.embl.gz +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.452 s - in uk.ac.sanger.artemis.io.GffToEMBLTest +[INFO] Running uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest +[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest [INFO] [INFO] Results: [INFO] @@ -2937,8 +2973,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 17:46 min -[INFO] Finished at: 2025-10-06T17:45:46-12:00 +[INFO] Total time: 17:32 min +[INFO] Finished at: 2026-11-10T02:38:11+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/artemis-18.2.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -2972,15 +3008,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.699 s -[INFO] Finished at: 2025-10-06T17:45:48-12:00 +[INFO] Total time: 0.864 s +[INFO] Finished at: 2026-11-10T02:38:14+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -partemis --base-directory=/build/reproducible-path/artemis-18.2.0\+dfsg --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/org/emboss/jemboss/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/emboss/jemboss -Oct 06, 2025 5:45:55 PM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Nov 10, 2026 2:38:21 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/artemis-18.2.0+dfsg/pom.xml: Dependency not found org.emboss:jemboss:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: org.emboss:jemboss:debian @@ -3024,12 +3060,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1184020/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/497978 and its subdirectories -I: Current time: Mon Oct 6 17:46:47 -12 2025 -I: pbuilder-time-stamp: 1759816007 +I: removing directory /srv/workspace/pbuilder/1184020 and its subdirectories +I: Current time: Tue Nov 10 02:39:18 +14 2026 +I: pbuilder-time-stamp: 1794227958