Diff of the two buildlogs: -- --- b1/build.log 2024-11-27 17:15:55.939954485 +0000 +++ b2/build.log 2024-11-27 17:20:56.526307949 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 30 11:32:56 -12 2025 -I: pbuilder-time-stamp: 1767137576 +I: Current time: Thu Nov 28 07:15:58 +14 2024 +I: pbuilder-time-stamp: 1732727758 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/766020/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 27 17:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='bc242ddf83d34c21888260990edd746b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='766020' - PS1='# ' - PS2='> ' + INVOCATION_ID=42d5343587334b1d9bf35c6f40326056 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=741663 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2m3NsGXe/pbuilderrc_ZRKy --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2m3NsGXe/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2m3NsGXe/pbuilderrc_sj0p --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2m3NsGXe/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/766020/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -193,7 +225,7 @@ Get: 55 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 38.6 MB in 0s (85.6 MB/s) +Fetched 38.6 MB in 0s (152 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20088 files and directories currently installed.) @@ -441,7 +473,11 @@ fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental @@ -541,25 +577,39 @@ make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build +make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp -In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, - from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, - from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: +In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ -In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: +In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, + from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, + from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ +In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: +/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 79 | public ::std::binary_function < TSav, TSav, bool > + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/string:49, + from /usr/include/c++/14/bits/locale_classes.h:40, + from /usr/include/c++/14/bits/ios_base.h:41, + from /usr/include/c++/14/ios:44, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: +/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function @@ -583,20 +633,6 @@ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: -/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 79 | public ::std::binary_function < TSav, TSav, bool > - | ^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/string:49, - from /usr/include/c++/14/bits/locale_classes.h:40, - from /usr/include/c++/14/bits/ios_base.h:41, - from /usr/include/c++/14/ios:44, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: -/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); @@ -3823,16 +3859,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'process.isra': +/usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3849,11 +3880,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'operator++.isra': +/usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4200,158 +4236,158 @@ Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 - 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.46 sec + 1/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.35 sec Start 13: test_search_blastn_sa_m9 - 2/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.46 sec + 2/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.42 sec + 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.41 sec + 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.38 sec Start 14: test_search_blastn_sa_sam - 3/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.46 sec Start 15: test_search_blastn_sa_bam - 4/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.50 sec Start 16: test_search_blastn_sa_m9.gz - 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.63 sec + 5/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.57 sec Start 17: test_search_blastn_sa_sam.bz2 - 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.63 sec + 6/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.66 sec Start 18: test_search_blastn_fm_m0 - 7/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.12 sec + 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.00 sec Start 19: test_search_blastn_fm_m8 - 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.10 sec + 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.05 sec Start 20: test_search_blastn_fm_m9 - 9/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.30 sec + 9/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.04 sec Start 21: test_search_blastn_fm_sam -10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.41 sec +10/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.09 sec Start 22: test_search_blastn_fm_bam -11/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.68 sec +11/80 Test #13: test_search_blastn_sa_m9 ......... Passed 2.58 sec Start 23: test_search_blastn_fm_m9.gz -12/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.98 sec +12/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.12 sec Start 24: test_search_blastn_fm_sam.bz2 -13/80 Test #20: test_search_blastn_fm_m9 ......... Passed 2.79 sec +13/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 2.98 sec Start 25: test_search_blastp_sa_m0 -14/80 Test #18: test_search_blastn_fm_m0 ......... Passed 3.54 sec +14/80 Test #12: test_search_blastn_sa_m8 ......... Passed 3.48 sec Start 26: test_search_blastp_sa_m8 -15/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.69 sec +15/80 Test #20: test_search_blastn_fm_m9 ......... Passed 2.68 sec Start 27: test_search_blastp_sa_m9 -16/80 Test #12: test_search_blastn_sa_m8 ......... Passed 4.32 sec +16/80 Test #11: test_search_blastn_sa_m0 ......... Passed 3.69 sec Start 28: test_search_blastp_sa_sam -17/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.68 sec +17/80 Test #14: test_search_blastn_sa_sam ........ Passed 3.52 sec Start 29: test_search_blastp_sa_bam -18/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 4.74 sec +18/80 Test #15: test_search_blastn_sa_bam ........ Passed 3.55 sec Start 30: test_search_blastp_sa_m9.gz -19/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.20 sec +19/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.90 sec Start 31: test_search_blastp_sa_sam.bz2 -20/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.44 sec +20/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.04 sec Start 32: test_search_blastp_fm_m0 -21/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.22 sec +21/80 Test #19: test_search_blastn_fm_m8 ......... Passed 3.56 sec +22/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.18 sec Start 33: test_search_blastp_fm_m8 -22/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.54 sec Start 34: test_search_blastp_fm_m9 -23/80 Test #19: test_search_blastn_fm_m8 ......... Passed 4.78 sec +23/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.04 sec Start 35: test_search_blastp_fm_sam -24/80 Test #13: test_search_blastn_sa_m9 ......... Passed 5.78 sec +24/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.86 sec Start 36: test_search_blastp_fm_bam -25/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.34 sec +25/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.16 sec Start 37: test_search_blastp_fm_m9.gz -26/80 Test #11: test_search_blastn_sa_m0 ......... Passed 6.35 sec +26/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.03 sec Start 38: test_search_blastp_fm_sam.bz2 -27/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.07 sec +27/80 Test #18: test_search_blastn_fm_m0 ......... Passed 4.51 sec Start 39: test_search_blastx_sa_m0 -28/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.97 sec +28/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.15 sec Start 40: test_search_blastx_sa_m8 -29/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.37 sec -30/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.00 sec +29/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.72 sec Start 41: test_search_blastx_sa_m9 +30/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.88 sec Start 42: test_search_blastx_sa_sam -31/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.86 sec +31/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.86 sec Start 43: test_search_blastx_sa_bam -32/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.62 sec +32/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.77 sec Start 44: test_search_blastx_sa_m9.gz -33/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 3.95 sec +33/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.83 sec Start 45: test_search_blastx_sa_sam.bz2 -34/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.11 sec +34/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.19 sec Start 46: test_search_blastx_fm_m0 -35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.06 sec +35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.90 sec Start 47: test_search_blastx_fm_m8 -36/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.19 sec +36/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.89 sec Start 48: test_search_blastx_fm_m9 -37/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 7.77 sec +37/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 2.93 sec Start 49: test_search_blastx_fm_sam -38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 5.31 sec +38/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.67 sec Start 50: test_search_blastx_fm_bam -39/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.82 sec +39/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.67 sec Start 51: test_search_blastx_fm_m9.gz -40/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.20 sec +40/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.82 sec Start 52: test_search_blastx_fm_sam.bz2 -41/80 Test #43: test_search_blastx_sa_bam ........ Passed 2.75 sec +41/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 4.43 sec Start 53: test_search_tblastn_sa_m0 -42/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.13 sec +42/80 Test #43: test_search_blastx_sa_bam ........ Passed 2.28 sec Start 54: test_search_tblastn_sa_m8 -43/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.60 sec +43/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.13 sec Start 55: test_search_tblastn_sa_m9 -44/80 Test #40: test_search_blastx_sa_m8 ......... Passed 3.44 sec +44/80 Test #40: test_search_blastx_sa_m8 ......... Passed 3.57 sec Start 56: test_search_tblastn_sa_sam -45/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.04 sec +45/80 Test #39: test_search_blastx_sa_m0 ......... Passed 3.99 sec Start 57: test_search_tblastn_sa_bam -46/80 Test #39: test_search_blastx_sa_m0 ......... Passed 4.63 sec +46/80 Test #41: test_search_blastx_sa_m9 ......... Passed 3.87 sec Start 58: test_search_tblastn_sa_m9.gz -47/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.88 sec +47/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.82 sec Start 59: test_search_tblastn_sa_sam.bz2 -48/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.71 sec +48/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.03 sec Start 60: test_search_tblastn_fm_m0 -49/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.44 sec +49/80 Test #42: test_search_blastx_sa_sam ........ Passed 4.15 sec Start 61: test_search_tblastn_fm_m8 -50/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.36 sec +50/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 1.99 sec Start 62: test_search_tblastn_fm_m9 -51/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.01 sec +51/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.26 sec Start 63: test_search_tblastn_fm_sam -52/80 Test #57: test_search_tblastn_sa_bam ....... Passed 1.95 sec +52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 2.52 sec Start 64: test_search_tblastn_fm_bam -53/80 Test #41: test_search_blastx_sa_m9 ......... Passed 6.16 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.81 sec Start 65: test_search_tblastn_fm_m9.gz -54/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 5.84 sec +54/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.12 sec Start 66: test_search_tblastn_fm_sam.bz2 -55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.30 sec +55/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 5.55 sec Start 67: test_search_tblastx_sa_m0 -56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 3.40 sec +56/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.83 sec Start 68: test_search_tblastx_sa_m8 -57/80 Test #42: test_search_blastx_sa_sam ........ Passed 6.93 sec +57/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.82 sec Start 69: test_search_tblastx_sa_m9 -58/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 1.67 sec +58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.27 sec Start 70: test_search_tblastx_sa_sam -59/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.51 sec +59/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.83 sec Start 71: test_search_tblastx_sa_bam -60/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.48 sec +60/80 Test #63: test_search_tblastn_fm_sam ....... Passed 1.76 sec Start 72: test_search_tblastx_sa_m9.gz -61/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.72 sec +61/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.57 sec Start 73: test_search_tblastx_sa_sam.bz2 -62/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.12 sec +62/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.82 sec Start 74: test_search_tblastx_fm_m0 -63/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 3.62 sec +63/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.52 sec Start 75: test_search_tblastx_fm_m8 -64/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 4.77 sec +64/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.98 sec Start 76: test_search_tblastx_fm_m9 -65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 3.12 sec +65/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.94 sec Start 77: test_search_tblastx_fm_sam -66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.58 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.29 sec Start 78: test_search_tblastx_fm_bam -67/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.28 sec +67/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 3.65 sec Start 79: test_search_tblastx_fm_m9.gz -68/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 5.87 sec +68/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 5.82 sec Start 80: test_search_tblastx_fm_sam.bz2 -69/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.38 sec -70/80 Test #71: test_search_tblastx_sa_bam ....... Passed 7.14 sec -71/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 7.32 sec -72/80 Test #77: test_search_tblastx_fm_sam ....... Passed 7.81 sec -73/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 11.41 sec -74/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 11.90 sec -75/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 12.60 sec -76/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 6.12 sec -77/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 11.83 sec -78/80 Test #70: test_search_tblastx_sa_sam ....... Passed 12.50 sec -79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 14.71 sec -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 9.05 sec +69/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.61 sec +70/80 Test #71: test_search_tblastx_sa_bam ....... Passed 6.45 sec +71/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 6.48 sec +72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 7.43 sec +73/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 8.78 sec +74/80 Test #77: test_search_tblastx_fm_sam ....... Passed 7.03 sec +75/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.22 sec +76/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 9.31 sec +77/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 10.07 sec +78/80 Test #70: test_search_tblastx_sa_sam ....... Passed 10.21 sec +79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 13.07 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 7.05 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 29.64 sec +Total Test time (real) = 24.86 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -4372,14 +4408,14 @@ make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Built target lambda [100%] Built target lambda_indexer @@ -4453,12 +4489,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/741663/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/766020 and its subdirectories -I: Current time: Tue Dec 30 11:38:54 -12 2025 -I: pbuilder-time-stamp: 1767137934 +I: removing directory /srv/workspace/pbuilder/741663 and its subdirectories +I: Current time: Thu Nov 28 07:20:55 +14 2024 +I: pbuilder-time-stamp: 1732728055