Diff of the two buildlogs: -- --- b1/build.log 2024-12-13 11:13:32.691399857 +0000 +++ b2/build.log 2024-12-13 11:20:53.815383882 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 12 23:08:25 -12 2024 -I: pbuilder-time-stamp: 1734088105 +I: Current time: Fri Jan 16 07:36:35 +14 2026 +I: pbuilder-time-stamp: 1768498595 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -36,51 +36,83 @@ dpkg-source: info: applying system_mbedtls_3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1420708/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 15 17:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d3f3d5f8c62c4206b51d5add8134f479' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1420708' - PS1='# ' - PS2='> ' + INVOCATION_ID=bbeedf74ad904b40ae77c17819220ec6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3618146 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.re3HwBmh/pbuilderrc_oSc5 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.re3HwBmh/b1 --logfile b1/build.log ncbi-vdb_3.1.1+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.re3HwBmh/pbuilderrc_67NI --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.re3HwBmh/b2 --logfile b2/build.log ncbi-vdb_3.1.1+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1420708/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -301,7 +333,7 @@ Get: 155 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 141 MB in 7s (20.0 MB/s) +Fetched 141 MB in 6s (25.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -831,8 +863,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 13 11:10:12 UTC 2024. -Universal Time is now: Fri Dec 13 11:10:12 UTC 2024. +Local time is now: Thu Jan 15 17:38:40 UTC 2026. +Universal Time is now: Thu Jan 15 17:38:40 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -963,7 +995,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-vdb_3.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-vdb_3.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package ncbi-vdb dpkg-buildpackage: info: source version 3.1.1+dfsg-1 dpkg-buildpackage: info: source distribution experimental @@ -1056,8 +1092,8 @@ -- Performing Test HAVE_GNU_GET_LIBC_VERSION_F -- Performing Test HAVE_GNU_GET_LIBC_VERSION_F - Success Using mbedtls installed in the system --- Configuring done (1.5s) --- Generating done (0.3s) +-- Configuring done (2.4s) +-- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: @@ -3808,446 +3844,446 @@ -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/mate-cache.vschema --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-reference.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/refseq.vschema --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/samextract-priv.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/reference.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/dna-reverse-cmpl.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/alignsrc.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-cmn.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/reader-refseq.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/iterator.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-cmn.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/alignsrc.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/reference.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-sequence.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/align.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/manager.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/iterator.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-alignment.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/iterator_examples.txt -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/samextract-pool-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/align.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/iterator_examples.txt -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/seq.vschema --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/samextract-lib.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/bam.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/align-access.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/refseq-mgr.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/extern.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/unsupported_pileup_estimator.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/align.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/quality-quantizer.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/qstat.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/samextract-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-refseq.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/dna-reverse-cmpl.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/refseq-mgr.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/quality-quantizer.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-reference.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/unsupported_pileup_estimator.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/pileup-stats.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/mate-cache.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/qstat.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/samextract-lib.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/align-access.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/align.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/bam.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/align/writer-alignment.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/gcp.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/aws.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/manager.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/cloud-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/cloud.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/manager.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/extern.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/gcp.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/impl.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/cloud-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/cloud/aws.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/sra.vschema --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/sra.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/insdc.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/seq.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/sra.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/sra.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/insdc/insdc.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/kdb-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/table.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/meta.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/database.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/index.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/manager.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/column.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/meta.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/rowset.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/rowset-impl.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/btree.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/manager.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/column.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/extern.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/rowset.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/index.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/kdb-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/consistency-check.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/namelist.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/meta.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kdb/meta.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/kfg-priv.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/config.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/keystore-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/repository.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/keystore.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/kart.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/properties.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/kart-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/ncbi -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/ncbi/kfgsums --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/ncbi/default.kfg -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/ncbi/certs.kfg --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/repository.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/ngc.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfg/ncbi/default.kfg +-- Installing: 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/build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/extendable-ramfile.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/quickmount.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/nullfile.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/cachetee3file.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/ramfile.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/buffile.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/defs.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/directory.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/arc.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/file-v1.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/path.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/directory.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kfs/file.hpp -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/http-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/socket.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/endpoint.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/adapt.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/cloud.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/manager.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/adapt.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/stream.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/cloud.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/kns-mgr-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/manager-ext.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/tls.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/impl.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/kns-mgr-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/tls.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/http-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/http.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/kns/endpoint.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/rsa-aes-hmac.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/ciphermgr.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/encfile.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/aes-priv.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/key.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/cipher.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/rng-impl.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/cipher-test.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/rng.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/manager.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/testciphermgr.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/ciphermgr-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/cipher-impl.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/manager.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/krypto/wgaencrypt.h --- Installing: 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/build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/view.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/vdb-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/manager.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/schema.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/dependencies.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/table.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/extern.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/manager.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/xform.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/page-map-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/quality.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/blob.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/vdb.vschema +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/built-in.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/schema-priv.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/quality.h -- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/schema.h --- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/types.hpp +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/blob-priv.h +-- Installing: /build/reproducible-path/ncbi-vdb-3.1.1+dfsg/debian/tmp/usr/include/vdb/vdb.h make[2]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.1.1+dfsg/obj-x86_64-linux-gnu' find debian/tmp/usr/lib/x86_64-linux-gnu -name "*-static.a" -delete # upstream installs versioned *.a libs - we only want a single version @@ -4340,35 +4376,35 @@ diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged +dpkg-shlibdeps: warning: symbol KQueueRelease used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KQueuePush used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateGetHeader used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries dpkg-shlibdeps: warning: symbol KLockMake used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol TimeoutInit used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol KFileSize_v1 used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol zlibVersion used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VectorAppend used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VectorCopy used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VectorGet used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VectorWhack used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KFileReadAll_v1 used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KThreadDetach used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KLockUnlock used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KQueueSealed used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KLockRelease used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KLockAcquire used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.1.1 found in none of the libraries dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake -dpkg-gencontrol: warning: Depends field of package libncbi-vdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libsam-extract-dev: substitution variable ${shlibs:Depends} used, but is not defined -dpkg-gencontrol: warning: package libncbi-vdb-dev: substitution variable ${devlibs:Depends} unused, but is defined +dpkg-gencontrol: warning: Depends field of package libncbi-vdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libncbi-wvdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libncbi-wvdb-dev: substitution variable ${devlibs:Depends} unused, but is defined +dpkg-gencontrol: warning: package libncbi-vdb-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'libncbi-vdb3-dbgsym' in '../libncbi-vdb3-dbgsym_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libncbi-vdb3' in '../libncbi-vdb3_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'ncbi-vdb-data' in '../ncbi-vdb-data_3.1.1+dfsg-1_all.deb'. -dpkg-deb: building package 'libncbi-vdb-dev' in '../libncbi-vdb-dev_3.1.1+dfsg-1_amd64.deb'. +dpkg-deb: building package 'libncbi-vdb3-dbgsym' in '../libncbi-vdb3-dbgsym_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libncbi-wvdb3' in '../libncbi-wvdb3_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libncbi-wvdb3-dbgsym' in '../libncbi-wvdb3-dbgsym_3.1.1+dfsg-1_amd64.deb'. -dpkg-deb: building package 'libncbi-wvdb-dev' in '../libncbi-wvdb-dev_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libsam-extract3' in '../libsam-extract3_3.1.1+dfsg-1_amd64.deb'. +dpkg-deb: building package 'libncbi-vdb-dev' in '../libncbi-vdb-dev_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libsam-extract3-dbgsym' in '../libsam-extract3-dbgsym_3.1.1+dfsg-1_amd64.deb'. +dpkg-deb: building package 'libncbi-wvdb-dev' in '../libncbi-wvdb-dev_3.1.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'libsam-extract-dev' in '../libsam-extract-dev_3.1.1+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-vdb_3.1.1+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../ncbi-vdb_3.1.1+dfsg-1_amd64.changes @@ -4377,12 +4413,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3618146/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1420708 and its subdirectories -I: Current time: Thu Dec 12 23:13:31 -12 2024 -I: pbuilder-time-stamp: 1734088411 +I: removing directory /srv/workspace/pbuilder/3618146 and its subdirectories +I: Current time: Fri Jan 16 07:43:52 +14 2026 +I: pbuilder-time-stamp: 1768499032