Diff of the two buildlogs: -- --- b1/build.log 2024-11-28 08:29:33.568307430 +0000 +++ b2/build.log 2024-11-28 08:32:36.304073092 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 27 20:16:17 -12 2024 -I: pbuilder-time-stamp: 1732781777 +I: Current time: Thu Jan 1 04:52:35 +14 2026 +I: pbuilder-time-stamp: 1767192755 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4044160/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 31 14:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='efe3b23b5bb84e3aa5686fecaebaf742' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4044160' - PS1='# ' - PS2='> ' + INVOCATION_ID=4bcece0ca7f74945bef52dae6ddcf465 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1979323 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.75zt9AO7/pbuilderrc_TiwY --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.75zt9AO7/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.75zt9AO7/pbuilderrc_6nmb --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.75zt9AO7/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4044160/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -193,7 +225,7 @@ Get: 55 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 41.3 MB in 3s (12.8 MB/s) +Fetched 41.3 MB in 0s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -441,7 +473,11 @@ fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental @@ -511,8 +547,8 @@ to work with policies introduced by or earlier. --- Configuring done (5.9s) --- Generating done (0.1s) +-- Configuring done (1.6s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -528,38 +564,38 @@ -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build - cd build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -[ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp -[ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp -In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: -/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 323 | setDate(parser, __DATE__); - | ^~~~~~~~ +[ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp +[ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ +In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: +/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 323 | setDate(parser, __DATE__); + | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function @@ -3571,13 +3607,15 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, - inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_toText': +/usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3594,7 +3632,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3615,7 +3653,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3636,16 +3674,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, - inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function 'assign.constprop.isra': +/usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3658,15 +3691,13 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, + inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'insertStream': +/usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3683,11 +3714,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'insertStream': +/usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3704,7 +3735,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3725,7 +3756,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3746,11 +3777,12 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'operator++.isra': +/usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3767,12 +3799,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: + inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, + inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function 'append.isra': +/usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3842,10 +3878,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3867,11 +3904,10 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3879,7 +3915,7 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda @@ -3892,16 +3928,25 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, + inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, + inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'insertStream': +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3932,6 +3977,27 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + 211 | data = (TValue *) operator new(count * sizeof(TValue)); + | ^ +/usr/include/c++/14/new: In member function 'insertStream': +/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here + 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) + | ^ +In function 'allocate', + inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, + inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, + inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, + inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, + inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, + inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, + inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, @@ -3996,11 +4062,22 @@ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: + inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, + inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_popIterators.isra': +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4034,52 +4111,11 @@ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, - inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, - inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 211 | data = (TValue *) operator new(count * sizeof(TValue)); - | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': -/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here - 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) - | ^ -In function 'allocate', - inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, - inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, - inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, - inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, - inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, - inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, - inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, - inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, - inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4241,7 +4277,7 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' @@ -4249,7 +4285,7 @@ make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' -cd build/tests && ctest --parallel 20 +cd build/tests && ctest --parallel 42 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm @@ -4271,150 +4307,150 @@ Start 18: test_search_blastn_fm_m0 Start 19: test_search_blastn_fm_m8 Start 20: test_search_blastn_fm_m9 - 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.86 sec Start 21: test_search_blastn_fm_sam - 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.89 sec Start 22: test_search_blastn_fm_bam - 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.97 sec Start 23: test_search_blastn_fm_m9.gz - 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 1.01 sec Start 24: test_search_blastn_fm_sam.bz2 - 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 2.22 sec Start 25: test_search_blastp_sa_m0 - 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 2.61 sec Start 26: test_search_blastp_sa_m8 - 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 3.51 sec Start 27: test_search_blastp_sa_m9 - 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 3.62 sec Start 28: test_search_blastp_sa_sam - 9/80 Test #10: test_mkindex_tblastx_fm .......... Passed 3.84 sec Start 29: test_search_blastp_sa_bam -10/80 Test #8: test_mkindex_tblastn_fm .......... Passed 3.90 sec Start 30: test_search_blastp_sa_m9.gz -11/80 Test #26: test_search_blastp_sa_m8 ......... Passed 2.08 sec Start 31: test_search_blastp_sa_sam.bz2 -12/80 Test #25: test_search_blastp_sa_m0 ......... Passed 3.11 sec Start 32: test_search_blastp_fm_m0 -13/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.79 sec Start 33: test_search_blastp_fm_m8 -14/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.76 sec Start 34: test_search_blastp_fm_m9 -15/80 Test #28: test_search_blastp_sa_sam ........ Passed 2.14 sec Start 35: test_search_blastp_fm_sam -16/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.93 sec Start 36: test_search_blastp_fm_bam -17/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.97 sec Start 37: test_search_blastp_fm_m9.gz -18/80 Test #33: test_search_blastp_fm_m8 ......... Passed 1.52 sec Start 38: test_search_blastp_fm_sam.bz2 -19/80 Test #35: test_search_blastp_fm_sam ........ Passed 1.49 sec Start 39: test_search_blastx_sa_m0 -20/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.63 sec Start 40: test_search_blastx_sa_m8 -21/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.54 sec Start 41: test_search_blastx_sa_m9 -22/80 Test #32: test_search_blastp_fm_m0 ......... Passed 2.22 sec Start 42: test_search_blastx_sa_sam -23/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.51 sec + 1/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.39 sec Start 43: test_search_blastx_sa_bam -24/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.65 sec + 2/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.46 sec Start 44: test_search_blastx_sa_m9.gz -25/80 Test #19: test_search_blastn_fm_m8 ......... Passed 8.80 sec + 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.73 sec Start 45: test_search_blastx_sa_sam.bz2 -26/80 Test #15: test_search_blastn_sa_bam ........ Passed 9.24 sec + 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.81 sec Start 46: test_search_blastx_fm_m0 -27/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 9.78 sec + 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 1.31 sec Start 47: test_search_blastx_fm_m8 -28/80 Test #11: test_search_blastn_sa_m0 ......... Passed 10.85 sec + 6/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.53 sec Start 48: test_search_blastx_fm_m9 -29/80 Test #13: test_search_blastn_sa_m9 ......... Passed 10.88 sec + 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.53 sec Start 49: test_search_blastx_fm_sam -30/80 Test #12: test_search_blastn_sa_m8 ......... Passed 10.93 sec + 8/80 Test #2: test_mkindex_blastn_fm ........... Passed 1.56 sec Start 50: test_search_blastx_fm_bam -31/80 Test #21: test_search_blastn_fm_sam ........ Passed 10.96 sec + 9/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.63 sec Start 51: test_search_blastx_fm_m9.gz -32/80 Test #20: test_search_blastn_fm_m9 ......... Passed 11.85 sec +10/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.68 sec Start 52: test_search_blastx_fm_sam.bz2 -33/80 Test #18: test_search_blastn_fm_m0 ......... Passed 11.99 sec +11/80 Test #35: test_search_blastp_fm_sam ........ Passed 1.60 sec Start 53: test_search_tblastn_sa_m0 -34/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 12.22 sec +12/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.68 sec +13/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.65 sec Start 54: test_search_tblastn_sa_m8 -35/80 Test #40: test_search_blastx_sa_m8 ......... Passed 5.69 sec Start 55: test_search_tblastn_sa_m9 -36/80 Test #22: test_search_blastn_fm_bam ........ Passed 12.35 sec +14/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.64 sec Start 56: test_search_tblastn_sa_sam -37/80 Test #14: test_search_blastn_sa_sam ........ Passed 13.51 sec +15/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.75 sec +16/80 Test #33: test_search_blastp_fm_m8 ......... Passed 1.73 sec Start 57: test_search_tblastn_sa_bam -38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 13.83 sec Start 58: test_search_tblastn_sa_m9.gz -39/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 14.70 sec +17/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.66 sec Start 59: test_search_tblastn_sa_sam.bz2 -40/80 Test #46: test_search_blastx_fm_m0 ......... Passed 5.91 sec +18/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.92 sec Start 60: test_search_tblastn_fm_m0 -41/80 Test #47: test_search_blastx_fm_m8 ......... Passed 5.15 sec +19/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.97 sec Start 61: test_search_tblastn_fm_m8 -42/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 8.49 sec +20/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 2.04 sec Start 62: test_search_tblastn_fm_m9 -43/80 Test #49: test_search_blastx_fm_sam ........ Passed 6.09 sec +21/80 Test #26: test_search_blastp_sa_m8 ......... Passed 2.08 sec Start 63: test_search_tblastn_fm_sam -44/80 Test #48: test_search_blastx_fm_m9 ......... Passed 6.20 sec +22/80 Test #28: test_search_blastp_sa_sam ........ Passed 2.10 sec Start 64: test_search_tblastn_fm_bam -45/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 5.39 sec +23/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 2.12 sec Start 65: test_search_tblastn_fm_m9.gz -46/80 Test #42: test_search_blastx_sa_sam ........ Passed 10.10 sec +24/80 Test #25: test_search_blastp_sa_m0 ......... Passed 2.42 sec Start 66: test_search_tblastn_fm_sam.bz2 -47/80 Test #50: test_search_blastx_fm_bam ........ Passed 6.63 sec +25/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.82 sec Start 67: test_search_tblastx_sa_m0 -48/80 Test #41: test_search_blastx_sa_m9 ......... Passed 10.54 sec +26/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.41 sec Start 68: test_search_tblastx_sa_m8 -49/80 Test #43: test_search_blastx_sa_bam ........ Passed 10.32 sec +27/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.19 sec Start 69: test_search_tblastx_sa_m9 -50/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 6.88 sec +28/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.63 sec Start 70: test_search_tblastx_sa_sam -51/80 Test #56: test_search_tblastn_sa_sam ....... Passed 7.07 sec +29/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.27 sec Start 71: test_search_tblastx_sa_bam -52/80 Test #39: test_search_blastx_sa_m0 ......... Passed 13.31 sec -53/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 7.60 sec +30/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.01 sec Start 72: test_search_tblastx_sa_m9.gz +31/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.30 sec Start 73: test_search_tblastx_sa_sam.bz2 -54/80 Test #64: test_search_tblastn_fm_bam ....... Passed 3.77 sec +32/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 1.72 sec Start 74: test_search_tblastx_fm_m0 -55/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 5.59 sec +33/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.81 sec Start 75: test_search_tblastx_fm_m8 -56/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 9.68 sec +34/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.14 sec Start 76: test_search_tblastx_fm_m9 -57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 8.38 sec +35/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.28 sec Start 77: test_search_tblastx_fm_sam -58/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 5.44 sec +36/80 Test #63: test_search_tblastn_fm_sam ....... Passed 1.79 sec Start 78: test_search_tblastx_fm_bam -59/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 7.39 sec +37/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.24 sec Start 79: test_search_tblastx_fm_m9.gz -60/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 13.95 sec +38/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.37 sec Start 80: test_search_tblastx_fm_sam.bz2 -61/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 8.21 sec -62/80 Test #63: test_search_tblastn_fm_sam ....... Passed 6.77 sec -63/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 11.86 sec -64/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 9.85 sec -65/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 7.20 sec -66/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 7.94 sec -67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 11.48 sec -68/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 12.66 sec -69/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 13.89 sec -70/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 14.50 sec -71/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 15.41 sec -72/80 Test #77: test_search_tblastx_fm_sam ....... Passed 15.60 sec -73/80 Test #71: test_search_tblastx_sa_bam ....... Passed 18.01 sec -74/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 16.54 sec -75/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 21.61 sec -76/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 19.65 sec -77/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 22.66 sec -78/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 23.37 sec -79/80 Test #70: test_search_tblastx_sa_sam ....... Passed 22.38 sec -80/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 24.59 sec +39/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.27 sec +40/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.50 sec +41/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.21 sec +42/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.92 sec +43/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 4.05 sec +44/80 Test #41: test_search_blastx_sa_m9 ......... Passed 5.65 sec +45/80 Test #13: test_search_blastn_sa_m9 ......... Passed 5.99 sec +46/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.57 sec +47/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.07 sec +48/80 Test #14: test_search_blastn_sa_sam ........ Passed 6.11 sec +49/80 Test #42: test_search_blastx_sa_sam ........ Passed 5.85 sec +50/80 Test #15: test_search_blastn_sa_bam ........ Passed 6.13 sec +51/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 5.71 sec +52/80 Test #20: test_search_blastn_fm_m9 ......... Passed 6.16 sec +53/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.50 sec +54/80 Test #43: test_search_blastx_sa_bam ........ Passed 5.80 sec +55/80 Test #40: test_search_blastx_sa_m8 ......... Passed 5.96 sec +56/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.21 sec +57/80 Test #12: test_search_blastn_sa_m8 ......... Passed 6.21 sec +58/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.05 sec +59/80 Test #22: test_search_blastn_fm_bam ........ Passed 6.24 sec +60/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 6.33 sec +61/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.36 sec +62/80 Test #18: test_search_blastn_fm_m0 ......... Passed 6.44 sec +63/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 5.86 sec +64/80 Test #11: test_search_blastn_sa_m0 ......... Passed 6.59 sec +65/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 6.78 sec +66/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 6.90 sec +67/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 4.29 sec +68/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.27 sec +69/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.51 sec +70/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.67 sec +71/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.62 sec +72/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.55 sec +73/80 Test #71: test_search_tblastx_sa_bam ....... Passed 5.39 sec +74/80 Test #70: test_search_tblastx_sa_sam ....... Passed 5.42 sec +75/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 5.65 sec +76/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 5.69 sec +77/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 5.70 sec +78/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 6.28 sec +79/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 6.28 sec +80/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.34 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 45.26 sec +Total Test time (real) = 11.18 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -4422,7 +4458,7 @@ dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build - cd build && make -j20 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks @@ -4441,10 +4477,10 @@ make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -[ 50%] Built target lambda make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +[ 50%] Built target lambda [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 @@ -4512,12 +4548,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1979323/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4044160 and its subdirectories -I: Current time: Wed Nov 27 20:29:32 -12 2024 -I: pbuilder-time-stamp: 1732782572 +I: removing directory /srv/workspace/pbuilder/1979323 and its subdirectories +I: Current time: Thu Jan 1 04:55:35 +14 2026 +I: pbuilder-time-stamp: 1767192935