Diff of the two buildlogs: -- --- b1/build.log 2019-06-14 13:22:46.319504316 +0000 +++ b2/build.log 2019-06-14 13:35:17.574040307 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 16 07:45:15 -12 2020 -I: pbuilder-time-stamp: 1594928715 +I: Current time: Sat Jun 15 03:22:49 +14 2019 +I: pbuilder-time-stamp: 1560518569 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Mon Oct 29 23:49:19 2018 -12 +gpgv: Signature made Wed Oct 31 01:49:19 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,6 +31,18 @@ dpkg-source: info: applying disable-swissprot-test.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/9800/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9800/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -99,7 +111,7 @@ Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] -Fetched 19.3 MB in 1s (27.3 MB/s) +Fetched 19.3 MB in 22s (879 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -252,9 +264,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (91.1 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21275 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package squizz dpkg-buildpackage: info: source version 0.99d+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -284,7 +328,7 @@ configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a thread-safe mkdir -p... /bin/mkdir -p +checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -304,10 +348,10 @@ checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B @@ -327,8 +371,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E @@ -403,7 +447,7 @@ config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build - make -j18 + make -j10 make[1]: Entering directory '/build/squizz-0.99d+dfsg' Making all in . make[2]: Entering directory '/build/squizz-0.99d+dfsg' @@ -413,204 +457,204 @@ make[2]: Entering directory '/build/squizz-0.99d+dfsg/lib' make all-am make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embl.lo sequence/embl.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embly.lo sequence/embly.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embll.lo sequence/embll.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fasta.lo sequence/fasta.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fastay.lo sequence/fastay.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fastal.lo sequence/fastal.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbank.lo sequence/genbank.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbanky.lo sequence/genbanky.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbankl.lo sequence/genbankl.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcg.lo sequence/gcg.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcgy.lo sequence/gcgy.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcgl.lo sequence/gcgl.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gde.lo sequence/gde.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gdey.lo sequence/gdey.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gdel.lo sequence/gdel.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/ig.lo sequence/ig.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embl.lo sequence/embl.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embly.lo sequence/embly.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embll.lo sequence/embll.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fasta.lo sequence/fasta.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fastay.lo sequence/fastay.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fastal.lo sequence/fastal.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbank.lo sequence/genbank.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbanky.lo sequence/genbanky.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -fPIC -DPIC -o sequence/.libs/embly.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.c -fPIC -DPIC -o .libs/sequence.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align.c -fPIC -DPIC -o .libs/align.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastay.c -fPIC -DPIC -o sequence/.libs/fastay.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdey.c -fPIC -DPIC -o sequence/.libs/gdey.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embl.c -fPIC -DPIC -o sequence/.libs/embl.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/ig.c -fPIC -DPIC -o sequence/.libs/ig.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embll.c -fPIC -DPIC -o sequence/.libs/embll.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align.c -fPIC -DPIC -o .libs/align.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbanky.c -fPIC -DPIC -o sequence/.libs/genbanky.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcg.c -fPIC -DPIC -o sequence/.libs/gcg.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgl.c -fPIC -DPIC -o sequence/.libs/gcgl.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -fPIC -DPIC -o sequence/.libs/embly.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gde.c -fPIC -DPIC -o sequence/.libs/gde.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbank.c -fPIC -DPIC -o sequence/.libs/genbank.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fasta.c -fPIC -DPIC -o sequence/.libs/fasta.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbankl.c -fPIC -DPIC -o sequence/.libs/genbankl.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embll.c -fPIC -DPIC -o sequence/.libs/embll.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastay.c -fPIC -DPIC -o sequence/.libs/fastay.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastal.c -fPIC -DPIC -o sequence/.libs/fastal.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgy.c -fPIC -DPIC -o sequence/.libs/gcgy.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdel.c -fPIC -DPIC -o 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>/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codatay.c -fPIC -DPIC -o sequence/.libs/codatay.o +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/codatal.lo sequence/codatal.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codata.c -o sequence/codata.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/codatal.c -fPIC -DPIC -o 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align/phylipil.o align/phylips.o align/phylipsy.o align/phylipsl.o align/stock.o align/stocky.o align/stockl.o align/parse.o align/phylip.o -ar: `u' modifier ignored since `D' is the default (see `U') -libtool: link: ranlib .libs/libbioali.a -libtool: link: ( cd ".libs" && rm -f "libbioali.la" && ln -s "../libbioali.la" "libbioali.la" ) -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioseq.la -rpath /usr/lib/i386-linux-gnu sequence.lo sequence/embl.lo sequence/embly.lo sequence/embll.lo sequence/fasta.lo sequence/fastay.lo sequence/fastal.lo sequence/genbank.lo sequence/genbanky.lo sequence/genbankl.lo sequence/gcg.lo sequence/gcgy.lo sequence/gcgl.lo sequence/gde.lo sequence/gdey.lo sequence/gdel.lo sequence/ig.lo sequence/igy.lo sequence/igl.lo sequence/nbrf.lo sequence/nbrfy.lo sequence/nbrfl.lo sequence/codata.lo sequence/codatay.lo sequence/codatal.lo sequence/raw.lo sequence/rawy.lo sequence/rawl.lo sequence/sprot.lo sequence/sproty.lo sequence/sprotl.lo sequence/parse.lo sequence/protein.lo sequence/utils.lo extern/text.lo extern/file.lo -libtool: link: gcc -shared -fPIC -DPIC .libs/sequence.o sequence/.libs/embl.o sequence/.libs/embly.o sequence/.libs/embll.o sequence/.libs/fasta.o sequence/.libs/fastay.o sequence/.libs/fastal.o sequence/.libs/genbank.o sequence/.libs/genbanky.o sequence/.libs/genbankl.o sequence/.libs/gcg.o sequence/.libs/gcgy.o sequence/.libs/gcgl.o sequence/.libs/gde.o sequence/.libs/gdey.o sequence/.libs/gdel.o sequence/.libs/ig.o sequence/.libs/igy.o sequence/.libs/igl.o sequence/.libs/nbrf.o sequence/.libs/nbrfy.o sequence/.libs/nbrfl.o sequence/.libs/codata.o sequence/.libs/codatay.o sequence/.libs/codatal.o sequence/.libs/raw.o sequence/.libs/rawy.o sequence/.libs/rawl.o sequence/.libs/sprot.o sequence/.libs/sproty.o sequence/.libs/sprotl.o sequence/.libs/parse.o sequence/.libs/protein.o sequence/.libs/utils.o extern/.libs/text.o extern/.libs/file.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioseq.so.0 -o .libs/libbioseq.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libbioseq.so.0" && ln -s "libbioseq.so.0.0.0" "libbioseq.so.0") +libtool: link: (cd ".libs" && rm -f "libbioali.so" && ln -s "libbioali.so.0.0.0" "libbioali.so") libtool: link: (cd ".libs" && rm -f "libbioseq.so" && ln -s "libbioseq.so.0.0.0" "libbioseq.so") +libtool: link: ar cru .libs/libbioali.a align.o align/clustal.o align/clustaly.o align/clustall.o align/fasta2.o align/mega.o align/megay.o align/megal.o align/msf.o align/msfy.o align/msfl.o align/nexusi.o align/nexusiy.o align/nexusil.o align/phylipi.o align/phylipiy.o align/phylipil.o align/phylips.o align/phylipsy.o align/phylipsl.o align/stock.o align/stocky.o align/stockl.o align/parse.o align/phylip.o libtool: link: ar cru .libs/libbioseq.a sequence.o sequence/embl.o sequence/embly.o sequence/embll.o sequence/fasta.o sequence/fastay.o sequence/fastal.o sequence/genbank.o sequence/genbanky.o sequence/genbankl.o sequence/gcg.o sequence/gcgy.o sequence/gcgl.o sequence/gde.o sequence/gdey.o sequence/gdel.o sequence/ig.o sequence/igy.o sequence/igl.o sequence/nbrf.o sequence/nbrfy.o sequence/nbrfl.o sequence/codata.o sequence/codatay.o sequence/codatal.o sequence/raw.o sequence/rawy.o sequence/rawl.o sequence/sprot.o sequence/sproty.o sequence/sprotl.o sequence/parse.o sequence/protein.o sequence/utils.o extern/text.o extern/file.o ar: `u' modifier ignored since `D' is the default (see `U') +ar: `u' modifier ignored since `D' is the default (see `U') +libtool: link: ranlib .libs/libbioali.a libtool: link: ranlib .libs/libbioseq.a +libtool: link: ( cd ".libs" && rm -f "libbioali.la" && ln -s "../libbioali.la" "libbioali.la" ) libtool: link: ( cd ".libs" && rm -f "libbioseq.la" && ln -s "../libbioseq.la" "libbioseq.la" ) make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/lib' @@ -618,7 +662,7 @@ make[2]: Entering directory '/build/squizz-0.99d+dfsg/src' gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o squizz.o squizz.c gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o format.o format.c -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/squizz squizz.o format.o ../lib/.libs/libbioali.so ../lib/.libs/libbioseq.so make[2]: Leaving directory '/build/squizz-0.99d+dfsg/src' Making all in data @@ -716,8 +760,8 @@ Making install in lib make[2]: Entering directory '/build/squizz-0.99d+dfsg/lib' make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbioseq.so.0.0.0 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.so.0.0.0 libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so.0 || { rm -f libbioseq.so.0 && ln -s libbioseq.so.0.0.0 libbioseq.so.0; }; }) libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so || { rm -f libbioseq.so && ln -s libbioseq.so.0.0.0 libbioseq.so; }; }) @@ -733,10 +777,10 @@ libtool: install: chmod 644 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: install: ranlib /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/install -c -m 644 align/clustal.h align/fasta2.h align/mega.h align/msf.h align/nexusi.h align/phylipi.h align/phylips.h align/stock.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence/embl.h sequence/fasta.h sequence/genbank.h sequence/gcg.h sequence/gde.h sequence/ig.h sequence/nbrf.h sequence/codata.h sequence/raw.h sequence/sprot.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence.h align.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/.' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' @@ -744,8 +788,8 @@ Making install in src make[2]: Entering directory '/build/squizz-0.99d+dfsg/src' make[3]: Entering directory '/build/squizz-0.99d+dfsg/src' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c squizz '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c squizz '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' libtool: warning: '../lib/libbioali.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: warning: '../lib/libbioseq.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/squizz /build/squizz-0.99d+dfsg/debian/tmp/usr/bin/squizz @@ -763,11 +807,11 @@ make[2]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'install-exec-am'. - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/install -c -m 644 seqfmt.html alifmt.html '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'squizz.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1/squizz.1' - /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' + /usr/bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' /usr/bin/install -c -m 644 'seqfmt.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/seqfmt.5' /usr/bin/install -c -m 644 'alifmt.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/alifmt.5' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/doc' @@ -794,39 +838,41 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol xstrdup used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_type used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol fastay_parse used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_check used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libsquizz-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-2_i386.deb'. +dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-2_i386.deb'. -dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'libsquizz-dbgsym' in '../libsquizz-dbgsym_0.99d+dfsg-2_i386.deb'. +dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../squizz_0.99d+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/9800/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9800/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/29510 and its subdirectories -I: Current time: Thu Jul 16 07:45:45 -12 2020 -I: pbuilder-time-stamp: 1594928745 +I: removing directory /srv/workspace/pbuilder/9800 and its subdirectories +I: Current time: Sat Jun 15 03:35:17 +14 2019 +I: pbuilder-time-stamp: 1560519317