Diff of the two buildlogs: -- --- b1/build.log 2019-06-24 08:40:26.036510060 +0000 +++ b2/build.log 2019-06-24 08:41:25.297839269 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 23 20:23:57 -12 2019 -I: pbuilder-time-stamp: 1561364637 +I: Current time: Mon Jul 27 05:03:27 +14 2020 +I: pbuilder-time-stamp: 1595775807 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Apr 24 04:02:49 2018 -12 +gpgv: Signature made Wed Apr 25 06:02:49 2018 +14 gpgv: using RSA key 7D1ACFFAD9E0806C9C4CD3925C13D6DB93052E03 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ruby-crb-blast_0.6.9-2.dsc @@ -33,6 +33,18 @@ dpkg-source: info: applying adjust-test I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/46243/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/46243/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -247,7 +259,7 @@ Get: 159 http://cdn-fastly.deb.debian.org/debian buster/main i386 ruby-shoulda all 3.5.0-3 [5216 B] Get: 160 http://cdn-fastly.deb.debian.org/debian buster/main i386 ruby-threach all 0.2.0-2 [5320 B] Get: 161 http://cdn-fastly.deb.debian.org/debian buster/main i386 ruby-trollop all 2.0-2 [16.8 kB] -Fetched 64.9 MB in 1min 8s (950 kB/s) +Fetched 64.9 MB in 24s (2728 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -923,9 +935,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (82.0 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27714 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-2 dpkg-buildpackage: info: source distribution unstable @@ -971,10 +1015,10 @@ install -D -m755 /build/ruby-crb-blast-0.6.9/bin/crb-blast /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast install -d /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast.rb +install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast/crb-blast.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast/version.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/version.rb -install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast/cmd.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/cmd.rb install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast/hit.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/hit.rb -install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast/crb-blast.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb +install -D -m644 /build/ruby-crb-blast-0.6.9/lib/crb-blast/cmd.rb /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/cmd.rb Rewriting shebang line of /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ @@ -1011,41 +1055,41 @@ Loaded suite /usr/lib/ruby/vendor_ruby/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (1.261073) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.262597) - test: crb-blast should break input file into pieces. :.: (1.187244) - test: crb-blast should find reciprocals. : .: (1.009832) - test: crb-blast should get non reciprocal hits. : .: (1.087967) + test: crb-blast should add secondary hits. : .: (0.318439) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.308196) + test: crb-blast should break input file into pieces. :.: (0.310918) + test: crb-blast should find reciprocals. : .: (0.310907) + test: crb-blast should get non reciprocal hits. : .: (0.298833) test: crb-blast should load output should check if the databases exist. : /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb:370: warning: instance variable @output1 not initialized /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb:371: warning: instance variable @output1 not initialized -.: (0.978424) +.: (0.309870) test: crb-blast should run blast should check if the databases exist yet. : /build/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb:150: warning: instance variable @databases not initialized -.: (1.022553) - test: crb-blast should setup2 should run ok. : .: (1.063107) +.: (0.301684) + test: crb-blast should setup2 should run ok. : .: (0.307108) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.002826) - test: crb-blast should run. : .: (1.414128) - test: crb-blast should work for query sequences with pipes. : .: (0.975109) + test: crb-blast should raise error when files don't exist. : .: (0.000775) + test: crb-blast should run. : .: (0.411181) + test: crb-blast should work for query sequences with pipes. : .: (0.273509) TestBinary: - test: crb-blast should run binary. : .: (0.455945) + test: crb-blast should run binary. : .: (0.113971) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (1.203478) - test: crb-blast should determine that the target is a protein sequence. : .: (1.267567) - test: crb-blast should find reciprocals. : .: (1.255924) - test: crb-blast should get number of reciprocals. : .: (1.301159) - test: crb-blast should get query results. : .: (1.208267) - test: crb-blast should load outputs. : .: (1.225551) - test: crb-blast should not find fake scaffold name. : .: (1.228627) - test: crb-blast should output all reciprocal hits. : .: (1.097180) - test: crb-blast should run blast. : .: (1.251590) - test: crb-blast should setup should run ok. : .: (1.291191) + test: crb-blast should check if contig has reciprocal hit. : .: (0.357451) + test: crb-blast should determine that the target is a protein sequence. : .: (0.358410) + test: crb-blast should find reciprocals. : .: (0.371807) + test: crb-blast should get number of reciprocals. : .: (0.357763) + test: crb-blast should get query results. : .: (0.372560) + test: crb-blast should load outputs. : .: (0.373878) + test: crb-blast should not find fake scaffold name. : .: (0.361452) + test: crb-blast should output all reciprocal hits. : .: (0.361090) + test: crb-blast should run blast. : .: (0.355997) + test: crb-blast should setup should run ok. : .: (0.361262) -Finished in 24.05530668 seconds. +Finished in 6.898542607 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -0.91 tests/s, 1.75 assertions/s +3.19 tests/s, 6.09 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1073,12 +1117,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/46243/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/46243/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/20829 and its subdirectories -I: Current time: Sun Jun 23 20:40:25 -12 2019 -I: pbuilder-time-stamp: 1561365625 +I: removing directory /srv/workspace/pbuilder/46243 and its subdirectories +I: Current time: Mon Jul 27 05:04:24 +14 2020 +I: pbuilder-time-stamp: 1595775864