Diff of the two buildlogs: -- --- b1/build.log 2020-06-28 10:46:30.514339370 +0000 +++ b2/build.log 2020-06-28 11:37:57.717863839 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jul 31 05:06:12 -12 2021 -I: pbuilder-time-stamp: 1627751172 +I: Current time: Mon Jun 29 00:47:36 +14 2020 +I: pbuilder-time-stamp: 1593341256 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jan 10 02:35:50 2019 -12 +gpgv: Signature made Fri Jan 11 04:35:50 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -45,138 +45,172 @@ dpkg-source: info: applying sphinx.ext.pngmath.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2969/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18050/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18050/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18050/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='93b8ea98aad64ac4a2e61f5366fa55c4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2969' - PS1='# ' - PS2='> ' + INVOCATION_ID=2f8b6ad10a984a56bf131e4f6787f318 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18050 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Cm7FC7TsEL/pbuilderrc_xeg9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Cm7FC7TsEL/b1 --logfile b1/build.log python-cogent_1.9-14.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Cm7FC7TsEL/pbuilderrc_F5tF --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Cm7FC7TsEL/b2 --logfile b2/build.log python-cogent_1.9-14.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux profitbricks-build6-i386 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux I: ls -l /bin - total 5476 - -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown - -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp - -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash - -rwxr-xr-x 1 root root 120676 Feb 28 2019 date - -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd - -rwxr-xr-x 1 root root 100620 Feb 28 2019 df - -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir - -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 34532 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln - -rwxr-xr-x 1 root root 55400 Jul 26 2018 login - -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls - -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 42348 Jan 9 2019 more - -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount - -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm - -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 31 02:47 sh -> dash - -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty - -rwsr-xr-x 1 root root 71072 Jan 9 2019 su - -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync - -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar - -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch - -rwxr-xr-x 1 root root 34532 Feb 28 2019 true - -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount - -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2969/tmp/hooks/D02_print_environment finished + total 5484 + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 29 00:50 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 28 22:28 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/18050/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -340,197 +374,198 @@ Get: 82 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 83 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 84 http://deb.debian.org/debian buster/main i386 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] -Get: 85 http://deb.debian.org/debian buster/main i386 liblmdb0 i386 0.9.22-1 [46.3 kB] -Get: 86 http://deb.debian.org/debian buster/main i386 libmbedcrypto3 i386 2.16.0-1 [222 kB] -Get: 87 http://deb.debian.org/debian buster/main i386 libmbedx509-0 i386 2.16.0-1 [93.0 kB] -Get: 88 http://deb.debian.org/debian buster/main i386 libmbedtls12 i386 2.16.0-1 [133 kB] -Get: 89 http://deb.debian.org/debian buster/main i386 ncbi-blast+ i386 2.8.1-1+deb10u1 [11.7 MB] -Get: 90 http://deb.debian.org/debian buster/main i386 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] -Get: 91 http://deb.debian.org/debian buster/main i386 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] -Get: 92 http://deb.debian.org/debian buster/main i386 cd-hit i386 4.6.8-2 [520 kB] -Get: 93 http://deb.debian.org/debian buster/main i386 cdbfasta i386 0.99-20100722-5 [60.0 kB] -Get: 94 http://deb.debian.org/debian buster/main i386 clearcut i386 1.0.9-3 [280 kB] -Get: 95 http://deb.debian.org/debian buster/main i386 clustalw i386 2.1+lgpl-6 [301 kB] -Get: 96 http://deb.debian.org/debian buster/main i386 cython i386 0.29.2-2 [1275 kB] -Get: 97 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] -Get: 98 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] -Get: 99 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] -Get: 100 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] -Get: 101 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] -Get: 102 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] -Get: 103 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] -Get: 104 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] -Get: 105 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] -Get: 106 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] -Get: 107 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] -Get: 108 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] -Get: 109 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] -Get: 110 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] -Get: 111 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] -Get: 112 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] -Get: 113 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB] -Get: 114 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB] -Get: 115 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB] -Get: 116 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB] -Get: 117 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1 [190 kB] -Get: 118 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB] -Get: 119 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB] -Get: 120 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB] -Get: 121 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB] -Get: 122 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB] -Get: 123 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB] -Get: 124 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB] -Get: 125 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B] -Get: 126 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] -Get: 127 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB] -Get: 128 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] -Get: 129 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB] -Get: 130 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB] -Get: 131 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB] -Get: 132 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] -Get: 133 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8 [13.0 MB] -Get: 134 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB] -Get: 135 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB] -Get: 136 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB] -Get: 137 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB] -Get: 138 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB] -Get: 139 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB] -Get: 140 http://deb.debian.org/debian buster/main i386 libgif7 i386 5.1.4-3 [44.4 kB] -Get: 141 http://deb.debian.org/debian buster/main i386 openjdk-11-jre i386 11.0.6+10-1~deb10u1 [34.8 kB] -Get: 142 http://deb.debian.org/debian buster/main i386 default-jre i386 2:1.11-71 [1044 B] -Get: 143 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] -Get: 144 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] -Get: 145 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] -Get: 146 http://deb.debian.org/debian buster/main i386 dialign i386 2.2.1-10 [141 kB] -Get: 147 http://deb.debian.org/debian buster/main i386 xml-core all 0.18+nmu1 [23.8 kB] -Get: 148 http://deb.debian.org/debian buster/main i386 docutils-common all 0.14+dfsg-4 [167 kB] -Get: 149 http://deb.debian.org/debian buster/main i386 fasttree i386 2.1.10-2 [177 kB] -Get: 150 http://deb.debian.org/debian buster/main i386 fonts-lyx all 2.3.2-1 [199 kB] -Get: 151 http://deb.debian.org/debian buster/main i386 infernal i386 1.1.2-2 [19.9 MB] -Get: 152 http://deb.debian.org/debian buster/main i386 libactivation-java all 1.2.0-2 [84.7 kB] -Get: 153 http://deb.debian.org/debian buster/main i386 libaopalliance-java all 20070526-6 [9048 B] -Get: 154 http://deb.debian.org/debian buster/main i386 libapache-pom-java all 18-1 [4676 B] -Get: 155 http://deb.debian.org/debian buster/main i386 libargs4j-java all 2.33-1 [139 kB] -Get: 156 http://deb.debian.org/debian buster/main i386 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] -Get: 157 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] -Get: 158 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] -Get: 159 http://deb.debian.org/debian buster/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] -Get: 160 http://deb.debian.org/debian buster/main i386 libcdi-api-java all 1.2-2 [54.5 kB] -Get: 161 http://deb.debian.org/debian buster/main i386 libjaxen-java all 1.1.6-4 [214 kB] -Get: 162 http://deb.debian.org/debian buster/main i386 libdom4j-java all 2.1.1-2 [310 kB] -Get: 163 http://deb.debian.org/debian buster/main i386 libcommons-parent-java all 43-1 [10.8 kB] -Get: 164 http://deb.debian.org/debian buster/main i386 libcommons-io-java all 2.6-2 [213 kB] -Get: 165 http://deb.debian.org/debian buster/main i386 libmaven-shared-utils-java all 3.3.0-1 [149 kB] -Get: 166 http://deb.debian.org/debian buster/main i386 libcommons-cli-java all 1.4-1 [55.2 kB] -Get: 167 http://deb.debian.org/debian buster/main i386 libcommons-lang3-java all 3.8-2 [478 kB] -Get: 168 http://deb.debian.org/debian buster/main i386 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB] -Get: 169 http://deb.debian.org/debian buster/main i386 libjsr305-java all 0.1~+svn49-11 [26.9 kB] -Get: 170 http://deb.debian.org/debian buster/main i386 libguava-java all 19.0-1 [2028 kB] -Get: 171 http://deb.debian.org/debian buster/main i386 libguice-java all 4.2.1-1 [962 kB] -Get: 172 http://deb.debian.org/debian buster/main i386 libmaven-parent-java all 31-2 [5100 B] -Get: 173 http://deb.debian.org/debian buster/main i386 libplexus-utils2-java all 3.1.1-1 [249 kB] -Get: 174 http://deb.debian.org/debian buster/main i386 libwagon-provider-api-java all 3.3.1-2 [50.1 kB] -Get: 175 http://deb.debian.org/debian buster/main i386 libmaven-resolver-java all 1.3.1-1 [549 kB] -Get: 176 http://deb.debian.org/debian buster/main i386 libplexus-cipher-java all 1.7-3 [15.0 kB] -Get: 177 http://deb.debian.org/debian buster/main i386 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] -Get: 178 http://deb.debian.org/debian buster/main i386 libplexus-component-annotations-java all 1.7.1-7 [7536 B] -Get: 179 http://deb.debian.org/debian buster/main i386 libplexus-interpolation-java all 1.25-1 [76.8 kB] -Get: 180 http://deb.debian.org/debian buster/main i386 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] -Get: 181 http://deb.debian.org/debian buster/main i386 libslf4j-java all 1.7.25-3 [143 kB] -Get: 182 http://deb.debian.org/debian buster/main i386 libsisu-inject-java all 0.3.3-1 [347 kB] -Get: 183 http://deb.debian.org/debian buster/main i386 libsisu-plexus-java all 0.3.3-3 [182 kB] -Get: 184 http://deb.debian.org/debian buster/main i386 libmaven3-core-java all 3.6.0-1 [1465 kB] -Get: 185 http://deb.debian.org/debian buster/main i386 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] -Get: 186 http://deb.debian.org/debian buster/main i386 libmaven-file-management-java all 3.0.0-1 [35.1 kB] -Get: 187 http://deb.debian.org/debian buster/main i386 libcommons-compress-java all 1.18-2 [530 kB] -Get: 188 http://deb.debian.org/debian buster/main i386 libplexus-io-java all 3.1.1-1 [64.6 kB] -Get: 189 http://deb.debian.org/debian buster/main i386 libsnappy1v5 i386 1.1.7-1 [18.0 kB] -Get: 190 http://deb.debian.org/debian buster/main i386 libsnappy-jni i386 1.1.7.2-1 [7236 B] -Get: 191 http://deb.debian.org/debian buster/main i386 libsnappy-java all 1.1.7.2-1 [73.7 kB] -Get: 192 http://deb.debian.org/debian buster/main i386 libxz-java all 1.8-2 [141 kB] -Get: 193 http://deb.debian.org/debian buster/main i386 libplexus-archiver-java all 3.6.0-2 [171 kB] -Get: 194 http://deb.debian.org/debian buster/main i386 libsisu-guice-java all 4.2.0-1 [785 kB] -Get: 195 http://deb.debian.org/debian buster/main i386 libsisu-ioc-java all 2.3.0-11 [492 kB] -Get: 196 http://deb.debian.org/debian buster/main i386 libhttpcore-java all 4.4.11-1 [625 kB] -Get: 197 http://deb.debian.org/debian buster/main i386 libcommons-codec-java all 1.11-1 [271 kB] -Get: 198 http://deb.debian.org/debian buster/main i386 libcommons-logging-java all 1.2-2 [62.2 kB] -Get: 199 http://deb.debian.org/debian buster/main i386 libhttpclient-java all 4.5.7-1 [721 kB] -Get: 200 http://deb.debian.org/debian buster/main i386 libjsoup-java all 1.10.2-2 [350 kB] -Get: 201 http://deb.debian.org/debian buster/main i386 libwagon-http-java all 3.3.1-2 [50.5 kB] -Get: 202 http://deb.debian.org/debian buster/main i386 libistack-commons-java all 3.0.6-3 [144 kB] -Get: 203 http://deb.debian.org/debian buster/main i386 libcodemodel-java all 2.6+jaxb2.3.0.1-8 [163 kB] -Get: 204 http://deb.debian.org/debian buster/main i386 libcommons-lang-java all 2.6-8 [273 kB] -Get: 205 http://deb.debian.org/debian buster/main i386 libdtd-parser-java all 1.2~svn20110404-1 [62.5 kB] -Get: 206 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] -Get: 207 http://deb.debian.org/debian buster/main i386 libjaxb-api-java all 2.3.1-1 [119 kB] -Get: 208 http://deb.debian.org/debian buster/main i386 libstax-ex-java all 1.7.8-3 [40.9 kB] -Get: 209 http://deb.debian.org/debian buster/main i386 libstreambuffer-java all 1.5.4-1 [71.8 kB] -Get: 210 http://deb.debian.org/debian buster/main i386 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] -Get: 211 http://deb.debian.org/debian buster/main i386 libxsom-java all 2.3.0.1-8 [396 kB] -Get: 212 http://deb.debian.org/debian buster/main i386 libfastinfoset-java all 1.2.12-3 [343 kB] -Get: 213 http://deb.debian.org/debian buster/main i386 librngom-java all 2.3.0.1-8 [288 kB] -Get: 214 http://deb.debian.org/debian buster/main i386 libtxw2-java all 2.3.0.1-8 [134 kB] -Get: 215 http://deb.debian.org/debian buster/main i386 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] -Get: 216 http://deb.debian.org/debian buster/main i386 libjaxb-java all 2.3.0.1-8 [1966 kB] -Get: 217 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB] -Get: 218 http://deb.debian.org/debian buster/main i386 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] -Get: 219 http://deb.debian.org/debian buster/main i386 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] -Get: 220 http://deb.debian.org/debian buster/main i386 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] -Get: 221 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] -Get: 222 http://deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2+deb10u1 [1059 kB] -Get: 223 http://deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2+deb10u1 [31.4 MB] -Get: 224 http://deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] -Get: 225 http://deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] -Get: 226 http://deb.debian.org/debian buster/main i386 libpython-all-dev i386 2.7.16-1 [1068 B] -Get: 227 http://deb.debian.org/debian buster/main i386 librdp-taxonomy-tree-java all 1.2.0-3 [17.8 kB] -Get: 228 http://deb.debian.org/debian buster/main i386 mafft i386 7.407-2 [908 kB] -Get: 229 http://deb.debian.org/debian buster/main i386 mothur i386 1.41.21-1 [5158 kB] -Get: 230 http://deb.debian.org/debian buster/main i386 muscle i386 1:3.8.1551-2 [232 kB] -Get: 231 http://deb.debian.org/debian buster/main i386 parsinsert i386 1.04-4 [69.2 kB] -Get: 232 http://deb.debian.org/debian buster/main i386 python-all i386 2.7.16-1 [1044 B] -Get: 233 http://deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2+deb10u1 [295 kB] -Get: 234 http://deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] -Get: 235 http://deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] -Get: 236 http://deb.debian.org/debian buster/main i386 python-all-dev i386 2.7.16-1 [1068 B] -Get: 237 http://deb.debian.org/debian buster/main i386 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] -Get: 238 http://deb.debian.org/debian buster/main i386 python-backports.functools-lru-cache all 1.5-3 [6704 B] -Get: 239 http://deb.debian.org/debian buster/main i386 python-six all 1.12.0-1 [15.7 kB] -Get: 240 http://deb.debian.org/debian buster/main i386 python-cycler all 0.10.0-1 [7448 B] -Get: 241 http://deb.debian.org/debian buster/main i386 python-dateutil all 2.7.3-3 [76.8 kB] -Get: 242 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] -Get: 243 http://deb.debian.org/debian buster/main i386 python-kiwisolver i386 1.0.1-2+b1 [76.3 kB] -Get: 244 http://deb.debian.org/debian buster/main i386 python-matplotlib2-data all 2.2.3-6 [4124 kB] -Get: 245 http://deb.debian.org/debian buster/main i386 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] -Get: 246 http://deb.debian.org/debian buster/main i386 python-tz all 2019.1-1 [33.6 kB] -Get: 247 http://deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] -Get: 248 http://deb.debian.org/debian buster/main i386 python-subprocess32 i386 3.5.3-1 [30.1 kB] -Get: 249 http://deb.debian.org/debian buster/main i386 python-matplotlib i386 2.2.3-6 [5092 kB] -Get: 250 http://deb.debian.org/debian buster/main i386 python-setuptools all 40.8.0-1 [382 kB] -Get: 251 http://deb.debian.org/debian buster/main i386 python3-alabaster all 0.7.8-1 [18.4 kB] -Get: 252 http://deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] -Get: 253 http://deb.debian.org/debian buster/main i386 python3-tz all 2019.1-1 [27.1 kB] -Get: 254 http://deb.debian.org/debian buster/main i386 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] -Get: 255 http://deb.debian.org/debian buster/main i386 python3-certifi all 2018.8.24-1 [140 kB] -Get: 256 http://deb.debian.org/debian buster/main i386 python3-chardet all 3.0.4-3 [80.5 kB] -Get: 257 http://deb.debian.org/debian buster/main i386 python3-roman all 2.0.0-3 [8768 B] -Get: 258 http://deb.debian.org/debian buster/main i386 python3-docutils all 0.14+dfsg-4 [378 kB] -Get: 259 http://deb.debian.org/debian buster/main i386 python3-idna all 2.6-1 [34.3 kB] -Get: 260 http://deb.debian.org/debian buster/main i386 python3-imagesize all 1.0.0-1 [4960 B] -Get: 261 http://deb.debian.org/debian buster/main i386 python3-markupsafe i386 1.1.0-1 [15.0 kB] -Get: 262 http://deb.debian.org/debian buster/main i386 python3-jinja2 all 2.10-2 [106 kB] -Get: 263 http://deb.debian.org/debian buster/main i386 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] -Get: 264 http://deb.debian.org/debian buster/main i386 python3-six all 1.12.0-1 [15.7 kB] -Get: 265 http://deb.debian.org/debian buster/main i386 python3-packaging all 19.0-1 [20.5 kB] -Get: 266 http://deb.debian.org/debian buster/main i386 python3-pygments all 2.3.1+dfsg-1 [594 kB] -Get: 267 http://deb.debian.org/debian buster/main i386 python3-urllib3 all 1.24.1-1 [97.1 kB] -Get: 268 http://deb.debian.org/debian buster/main i386 python3-requests all 2.21.0-1 [66.9 kB] -Get: 269 http://deb.debian.org/debian buster/main i386 sphinx-common all 1.8.4-1 [500 kB] -Get: 270 http://deb.debian.org/debian buster/main i386 python3-sphinx all 1.8.4-1 [481 kB] -Get: 271 http://deb.debian.org/debian buster/main i386 raxml i386 8.2.12+dfsg-1 [1199 kB] -Get: 272 http://deb.debian.org/debian buster/main i386 rdp-readseq all 2.0.2-6 [453 kB] -Get: 273 http://deb.debian.org/debian buster/main i386 rdp-classifier all 2.10.2-4 [227 kB] -Get: 274 http://deb.debian.org/debian buster/main i386 rtax all 0.984-6 [26.2 kB] -Fetched 219 MB in 4s (59.6 MB/s) +Get: 85 http://deb.debian.org/debian buster/main i386 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] +Get: 86 http://deb.debian.org/debian buster/main i386 liblmdb0 i386 0.9.22-1 [46.3 kB] +Get: 87 http://deb.debian.org/debian buster/main i386 libmbedcrypto3 i386 2.16.0-1 [222 kB] +Get: 88 http://deb.debian.org/debian buster/main i386 libmbedx509-0 i386 2.16.0-1 [93.0 kB] +Get: 89 http://deb.debian.org/debian buster/main i386 libmbedtls12 i386 2.16.0-1 [133 kB] +Get: 90 http://deb.debian.org/debian buster/main i386 ncbi-blast+ i386 2.8.1-1+deb10u1 [11.7 MB] +Get: 91 http://deb.debian.org/debian buster/main i386 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] +Get: 92 http://deb.debian.org/debian buster/main i386 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] +Get: 93 http://deb.debian.org/debian buster/main i386 cd-hit i386 4.6.8-2 [520 kB] +Get: 94 http://deb.debian.org/debian buster/main i386 cdbfasta i386 0.99-20100722-5 [60.0 kB] +Get: 95 http://deb.debian.org/debian buster/main i386 clearcut i386 1.0.9-3 [280 kB] +Get: 96 http://deb.debian.org/debian buster/main i386 clustalw i386 2.1+lgpl-6 [301 kB] +Get: 97 http://deb.debian.org/debian buster/main i386 cython i386 0.29.2-2 [1275 kB] +Get: 98 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] +Get: 99 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] +Get: 100 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] +Get: 101 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] +Get: 102 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] +Get: 103 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] +Get: 104 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] +Get: 105 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] +Get: 106 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] +Get: 107 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] +Get: 108 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] +Get: 109 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] +Get: 110 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] +Get: 111 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] +Get: 112 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] +Get: 113 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] +Get: 114 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB] +Get: 115 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB] +Get: 116 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB] +Get: 117 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB] +Get: 118 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1 [190 kB] +Get: 119 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB] +Get: 120 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB] +Get: 121 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB] +Get: 122 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB] +Get: 123 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB] +Get: 124 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB] +Get: 125 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB] +Get: 126 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B] +Get: 127 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] +Get: 128 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB] +Get: 129 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] +Get: 130 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB] +Get: 131 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB] +Get: 132 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB] +Get: 133 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] +Get: 134 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8 [13.0 MB] +Get: 135 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB] +Get: 136 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB] +Get: 137 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB] +Get: 138 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB] +Get: 139 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB] +Get: 140 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB] +Get: 141 http://deb.debian.org/debian buster/main i386 libgif7 i386 5.1.4-3 [44.4 kB] +Get: 142 http://deb.debian.org/debian buster/main i386 openjdk-11-jre i386 11.0.6+10-1~deb10u1 [34.8 kB] +Get: 143 http://deb.debian.org/debian buster/main i386 default-jre i386 2:1.11-71 [1044 B] +Get: 144 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] +Get: 145 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] +Get: 146 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] +Get: 147 http://deb.debian.org/debian buster/main i386 dialign i386 2.2.1-10 [141 kB] +Get: 148 http://deb.debian.org/debian buster/main i386 xml-core all 0.18+nmu1 [23.8 kB] +Get: 149 http://deb.debian.org/debian buster/main i386 docutils-common all 0.14+dfsg-4 [167 kB] +Get: 150 http://deb.debian.org/debian buster/main i386 fasttree i386 2.1.10-2 [177 kB] +Get: 151 http://deb.debian.org/debian buster/main i386 fonts-lyx all 2.3.2-1 [199 kB] +Get: 152 http://deb.debian.org/debian buster/main i386 infernal i386 1.1.2-2 [19.9 MB] +Get: 153 http://deb.debian.org/debian buster/main i386 libactivation-java all 1.2.0-2 [84.7 kB] +Get: 154 http://deb.debian.org/debian buster/main i386 libaopalliance-java all 20070526-6 [9048 B] +Get: 155 http://deb.debian.org/debian buster/main i386 libapache-pom-java all 18-1 [4676 B] +Get: 156 http://deb.debian.org/debian buster/main i386 libargs4j-java all 2.33-1 [139 kB] +Get: 157 http://deb.debian.org/debian buster/main i386 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] +Get: 158 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] +Get: 159 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] +Get: 160 http://deb.debian.org/debian buster/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] +Get: 161 http://deb.debian.org/debian buster/main i386 libcdi-api-java all 1.2-2 [54.5 kB] +Get: 162 http://deb.debian.org/debian buster/main i386 libjaxen-java all 1.1.6-4 [214 kB] +Get: 163 http://deb.debian.org/debian buster/main i386 libdom4j-java all 2.1.1-2 [310 kB] +Get: 164 http://deb.debian.org/debian buster/main i386 libcommons-parent-java all 43-1 [10.8 kB] +Get: 165 http://deb.debian.org/debian buster/main i386 libcommons-io-java all 2.6-2 [213 kB] +Get: 166 http://deb.debian.org/debian buster/main i386 libmaven-shared-utils-java all 3.3.0-1 [149 kB] +Get: 167 http://deb.debian.org/debian buster/main i386 libcommons-cli-java all 1.4-1 [55.2 kB] +Get: 168 http://deb.debian.org/debian buster/main i386 libcommons-lang3-java all 3.8-2 [478 kB] +Get: 169 http://deb.debian.org/debian buster/main i386 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB] +Get: 170 http://deb.debian.org/debian buster/main i386 libjsr305-java all 0.1~+svn49-11 [26.9 kB] +Get: 171 http://deb.debian.org/debian buster/main i386 libguava-java all 19.0-1 [2028 kB] +Get: 172 http://deb.debian.org/debian buster/main i386 libguice-java all 4.2.1-1 [962 kB] +Get: 173 http://deb.debian.org/debian buster/main i386 libmaven-parent-java all 31-2 [5100 B] +Get: 174 http://deb.debian.org/debian buster/main i386 libplexus-utils2-java all 3.1.1-1 [249 kB] +Get: 175 http://deb.debian.org/debian buster/main i386 libwagon-provider-api-java all 3.3.1-2 [50.1 kB] +Get: 176 http://deb.debian.org/debian buster/main i386 libmaven-resolver-java all 1.3.1-1 [549 kB] +Get: 177 http://deb.debian.org/debian buster/main i386 libplexus-cipher-java all 1.7-3 [15.0 kB] +Get: 178 http://deb.debian.org/debian buster/main i386 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] +Get: 179 http://deb.debian.org/debian buster/main i386 libplexus-component-annotations-java all 1.7.1-7 [7536 B] +Get: 180 http://deb.debian.org/debian buster/main i386 libplexus-interpolation-java all 1.25-1 [76.8 kB] +Get: 181 http://deb.debian.org/debian buster/main i386 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] +Get: 182 http://deb.debian.org/debian buster/main i386 libslf4j-java all 1.7.25-3 [143 kB] +Get: 183 http://deb.debian.org/debian buster/main i386 libsisu-inject-java all 0.3.3-1 [347 kB] +Get: 184 http://deb.debian.org/debian buster/main i386 libsisu-plexus-java all 0.3.3-3 [182 kB] +Get: 185 http://deb.debian.org/debian buster/main i386 libmaven3-core-java all 3.6.0-1 [1465 kB] +Get: 186 http://deb.debian.org/debian buster/main i386 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] +Get: 187 http://deb.debian.org/debian buster/main i386 libmaven-file-management-java all 3.0.0-1 [35.1 kB] +Get: 188 http://deb.debian.org/debian buster/main i386 libcommons-compress-java all 1.18-2 [530 kB] +Get: 189 http://deb.debian.org/debian buster/main i386 libplexus-io-java all 3.1.1-1 [64.6 kB] +Get: 190 http://deb.debian.org/debian buster/main i386 libsnappy1v5 i386 1.1.7-1 [18.0 kB] +Get: 191 http://deb.debian.org/debian buster/main i386 libsnappy-jni i386 1.1.7.2-1 [7236 B] +Get: 192 http://deb.debian.org/debian buster/main i386 libsnappy-java all 1.1.7.2-1 [73.7 kB] +Get: 193 http://deb.debian.org/debian buster/main i386 libxz-java all 1.8-2 [141 kB] +Get: 194 http://deb.debian.org/debian buster/main i386 libplexus-archiver-java all 3.6.0-2 [171 kB] +Get: 195 http://deb.debian.org/debian buster/main i386 libsisu-guice-java all 4.2.0-1 [785 kB] +Get: 196 http://deb.debian.org/debian buster/main i386 libsisu-ioc-java all 2.3.0-11 [492 kB] +Get: 197 http://deb.debian.org/debian buster/main i386 libhttpcore-java all 4.4.11-1 [625 kB] +Get: 198 http://deb.debian.org/debian buster/main i386 libcommons-codec-java all 1.11-1 [271 kB] +Get: 199 http://deb.debian.org/debian buster/main i386 libcommons-logging-java all 1.2-2 [62.2 kB] +Get: 200 http://deb.debian.org/debian buster/main i386 libhttpclient-java all 4.5.7-1 [721 kB] +Get: 201 http://deb.debian.org/debian buster/main i386 libjsoup-java all 1.10.2-2 [350 kB] +Get: 202 http://deb.debian.org/debian buster/main i386 libwagon-http-java all 3.3.1-2 [50.5 kB] +Get: 203 http://deb.debian.org/debian buster/main i386 libistack-commons-java all 3.0.6-3 [144 kB] +Get: 204 http://deb.debian.org/debian buster/main i386 libcodemodel-java all 2.6+jaxb2.3.0.1-8 [163 kB] +Get: 205 http://deb.debian.org/debian buster/main i386 libcommons-lang-java all 2.6-8 [273 kB] +Get: 206 http://deb.debian.org/debian buster/main i386 libdtd-parser-java all 1.2~svn20110404-1 [62.5 kB] +Get: 207 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] +Get: 208 http://deb.debian.org/debian buster/main i386 libjaxb-api-java all 2.3.1-1 [119 kB] +Get: 209 http://deb.debian.org/debian buster/main i386 libstax-ex-java all 1.7.8-3 [40.9 kB] +Get: 210 http://deb.debian.org/debian buster/main i386 libstreambuffer-java all 1.5.4-1 [71.8 kB] +Get: 211 http://deb.debian.org/debian buster/main i386 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] +Get: 212 http://deb.debian.org/debian buster/main i386 libxsom-java all 2.3.0.1-8 [396 kB] +Get: 213 http://deb.debian.org/debian buster/main i386 libfastinfoset-java all 1.2.12-3 [343 kB] +Get: 214 http://deb.debian.org/debian buster/main i386 librngom-java all 2.3.0.1-8 [288 kB] +Get: 215 http://deb.debian.org/debian buster/main i386 libtxw2-java all 2.3.0.1-8 [134 kB] +Get: 216 http://deb.debian.org/debian buster/main i386 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] +Get: 217 http://deb.debian.org/debian buster/main i386 libjaxb-java all 2.3.0.1-8 [1966 kB] +Get: 218 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB] +Get: 219 http://deb.debian.org/debian buster/main i386 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] +Get: 220 http://deb.debian.org/debian buster/main i386 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] +Get: 221 http://deb.debian.org/debian buster/main i386 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] +Get: 222 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] +Get: 223 http://deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2+deb10u1 [1059 kB] +Get: 224 http://deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2+deb10u1 [31.4 MB] +Get: 225 http://deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] +Get: 226 http://deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] +Get: 227 http://deb.debian.org/debian buster/main i386 libpython-all-dev i386 2.7.16-1 [1068 B] +Get: 228 http://deb.debian.org/debian buster/main i386 librdp-taxonomy-tree-java all 1.2.0-3 [17.8 kB] +Get: 229 http://deb.debian.org/debian buster/main i386 mafft i386 7.407-2 [908 kB] +Get: 230 http://deb.debian.org/debian buster/main i386 mothur i386 1.41.21-1 [5158 kB] +Get: 231 http://deb.debian.org/debian buster/main i386 muscle i386 1:3.8.1551-2 [232 kB] +Get: 232 http://deb.debian.org/debian buster/main i386 parsinsert i386 1.04-4 [69.2 kB] +Get: 233 http://deb.debian.org/debian buster/main i386 python-all i386 2.7.16-1 [1044 B] +Get: 234 http://deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2+deb10u1 [295 kB] +Get: 235 http://deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] +Get: 236 http://deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] +Get: 237 http://deb.debian.org/debian buster/main i386 python-all-dev i386 2.7.16-1 [1068 B] +Get: 238 http://deb.debian.org/debian buster/main i386 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] +Get: 239 http://deb.debian.org/debian buster/main i386 python-backports.functools-lru-cache all 1.5-3 [6704 B] +Get: 240 http://deb.debian.org/debian buster/main i386 python-six all 1.12.0-1 [15.7 kB] +Get: 241 http://deb.debian.org/debian buster/main i386 python-cycler all 0.10.0-1 [7448 B] +Get: 242 http://deb.debian.org/debian buster/main i386 python-dateutil all 2.7.3-3 [76.8 kB] +Get: 243 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] +Get: 244 http://deb.debian.org/debian buster/main i386 python-kiwisolver i386 1.0.1-2+b1 [76.3 kB] +Get: 245 http://deb.debian.org/debian buster/main i386 python-matplotlib2-data all 2.2.3-6 [4124 kB] +Get: 246 http://deb.debian.org/debian buster/main i386 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] +Get: 247 http://deb.debian.org/debian buster/main i386 python-tz all 2019.1-1 [33.6 kB] +Get: 248 http://deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] +Get: 249 http://deb.debian.org/debian buster/main i386 python-subprocess32 i386 3.5.3-1 [30.1 kB] +Get: 250 http://deb.debian.org/debian buster/main i386 python-matplotlib i386 2.2.3-6 [5092 kB] +Get: 251 http://deb.debian.org/debian buster/main i386 python-setuptools all 40.8.0-1 [382 kB] +Get: 252 http://deb.debian.org/debian buster/main i386 python3-alabaster all 0.7.8-1 [18.4 kB] +Get: 253 http://deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] +Get: 254 http://deb.debian.org/debian buster/main i386 python3-tz all 2019.1-1 [27.1 kB] +Get: 255 http://deb.debian.org/debian buster/main i386 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] +Get: 256 http://deb.debian.org/debian buster/main i386 python3-certifi all 2018.8.24-1 [140 kB] +Get: 257 http://deb.debian.org/debian buster/main i386 python3-chardet all 3.0.4-3 [80.5 kB] +Get: 258 http://deb.debian.org/debian buster/main i386 python3-roman all 2.0.0-3 [8768 B] +Get: 259 http://deb.debian.org/debian buster/main i386 python3-docutils all 0.14+dfsg-4 [378 kB] +Get: 260 http://deb.debian.org/debian buster/main i386 python3-idna all 2.6-1 [34.3 kB] +Get: 261 http://deb.debian.org/debian buster/main i386 python3-imagesize all 1.0.0-1 [4960 B] +Get: 262 http://deb.debian.org/debian buster/main i386 python3-markupsafe i386 1.1.0-1 [15.0 kB] +Get: 263 http://deb.debian.org/debian buster/main i386 python3-jinja2 all 2.10-2 [106 kB] +Get: 264 http://deb.debian.org/debian buster/main i386 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] +Get: 265 http://deb.debian.org/debian buster/main i386 python3-six all 1.12.0-1 [15.7 kB] +Get: 266 http://deb.debian.org/debian buster/main i386 python3-packaging all 19.0-1 [20.5 kB] +Get: 267 http://deb.debian.org/debian buster/main i386 python3-pygments all 2.3.1+dfsg-1 [594 kB] +Get: 268 http://deb.debian.org/debian buster/main i386 python3-urllib3 all 1.24.1-1 [97.1 kB] +Get: 269 http://deb.debian.org/debian buster/main i386 python3-requests all 2.21.0-1 [66.9 kB] +Get: 270 http://deb.debian.org/debian buster/main i386 sphinx-common all 1.8.4-1 [500 kB] +Get: 271 http://deb.debian.org/debian buster/main i386 python3-sphinx all 1.8.4-1 [481 kB] +Get: 272 http://deb.debian.org/debian buster/main i386 raxml i386 8.2.12+dfsg-1 [1199 kB] +Get: 273 http://deb.debian.org/debian buster/main i386 rdp-readseq all 2.0.2-6 [453 kB] +Get: 274 http://deb.debian.org/debian buster/main i386 rdp-classifier all 2.10.2-4 [227 kB] +Get: 275 http://deb.debian.org/debian buster/main i386 rtax all 0.984-6 [26.2 kB] +Fetched 218 MB in 36min 32s (99.3 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -1648,134 +1683,134 @@ Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Comodo_AAA_Services_root.pem -Adding debian:DST_Root_CA_X3.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem -Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:EC-ACC.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:Certigna.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:SecureSign_RootCA11.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem -Adding debian:ISRG_Root_X1.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:Amazon_Root_CA_4.pem +Adding debian:SecureTrust_CA.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem -Adding debian:Taiwan_GRCA.pem -Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem -Adding debian:Izenpe.com.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:certSIGN_ROOT_CA.pem -Adding debian:Certum_Trusted_Network_CA.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:thawte_Primary_Root_CA.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:GeoTrust_Universal_CA.pem -Adding debian:AffirmTrust_Networking.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:XRamp_Global_CA_Root.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem +Adding debian:QuoVadis_Root_CA.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:DST_Root_CA_X3.pem +Adding debian:Certplus_Class_2_Primary_CA.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:AffirmTrust_Commercial.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:GeoTrust_Universal_CA_2.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:GlobalSign_Root_CA.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Certigna.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:GlobalSign_Root_CA_-_R6.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem +Adding debian:GeoTrust_Global_CA.pem +Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:Secure_Global_CA.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:LuxTrust_Global_Root_2.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem -Adding debian:Certinomis_-_Root_CA.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:thawte_Primary_Root_CA_-_G2.pem -Adding debian:Amazon_Root_CA_1.pem +Adding debian:thawte_Primary_Root_CA.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem +Adding debian:Cybertrust_Global_Root.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:COMODO_ECC_Certification_Authority.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:GeoTrust_Global_CA.pem -Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:Starfield_Class_2_CA.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem +Adding debian:Deutsche_Telekom_Root_CA_2.pem +Adding debian:Taiwan_GRCA.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:Izenpe.com.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:Sonera_Class_2_Root_CA.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:GeoTrust_Universal_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Global_Chambersign_Root_-_2008.pem -Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:COMODO_Certification_Authority.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem -Adding debian:Certplus_Class_2_Primary_CA.pem -Adding debian:Deutsche_Telekom_Root_CA_2.pem -Adding debian:Cybertrust_Global_Root.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem -Adding debian:Secure_Global_CA.pem -Adding debian:thawte_Primary_Root_CA_-_G3.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:EE_Certification_Centre_Root_CA.pem -Adding debian:SecureTrust_CA.pem -Adding debian:SecureSign_RootCA11.pem -Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:thawte_Primary_Root_CA_-_G2.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:EC-ACC.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:LuxTrust_Global_Root_2.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:Certinomis_-_Root_CA.pem +Adding debian:XRamp_Global_CA_Root.pem Adding debian:AddTrust_External_Root.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:Network_Solutions_Certificate_Authority.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:ePKI_Root_Certification_Authority.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:thawte_Primary_Root_CA_-_G3.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:Security_Communication_Root_CA.pem +Adding debian:COMODO_ECC_Certification_Authority.pem done. Setting up ant-optional (1.10.5-2) ... Setting up libistack-commons-java (3.0.6-3) ... @@ -1828,7 +1863,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-cogent-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/python-cogent-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-cogent dpkg-buildpackage: info: source version 1.9-14 dpkg-buildpackage: info: source distribution unstable @@ -1966,376 +2001,376 @@ copying cogent/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/align.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/algorithm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/indel_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/indel_positions.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/pairwise.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/dp_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/pycompare.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/algorithm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/progressive.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/dp_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/traceback.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/indel_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/progressive.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights -copying cogent/align/weights/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights copying cogent/align/weights/methods.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights copying cogent/align/weights/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights +copying cogent/align/weights/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/bwa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/sfffile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/sffinfo.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/fastq_join.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/carnac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/parameters.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/rtax.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/fasttree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cd_hit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/clustalw.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/vienna_package.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/mothur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cdbfasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/flash.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/pplacer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/seqprep.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/gctmpca.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/raxml_v730.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cdbfasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/raxml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/formatdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/raxml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/clearcut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/uclust.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/usearch.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/mafft.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/muscle.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/mothur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/uclust.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/fasttree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/gctmpca.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cd_hit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/sfffile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/muscle_v38.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/sffinfo.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/clearcut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/dotur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/fastq_join.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/infernal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/guppy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/parsinsert.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/pandaseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/vienna_package.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/pplacer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/raxml_v730.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/usearch.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/muscle.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/mafft.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/blat.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/clustalw.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/parsinsert.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/guppy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/pandaseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/infernal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/parameters.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/bwa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/approximate_mds.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/procrustes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/nmds.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/nmds.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/procrustes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/entity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/location.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/usage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/info.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/location.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/moltype.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/profile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/genetic_code.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/bitvector.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/alphabet.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/entity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/annotation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/alphabet.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/genetic_code.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/moltype.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/profile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/nucleic_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/energy_params.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/protein_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data -copying cogent/data/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/ligand_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/molecular_weight.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data +copying cogent/data/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db -copying cogent/db/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db -copying cogent/db/ncbi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db +copying cogent/db/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db copying cogent/db/rfam.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db +copying cogent/db/ncbi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db copying cogent/db/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db -copying cogent/db/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db +copying cogent/db/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/name.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/genome.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/related_region.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/region.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/species.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/host.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/name.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/database.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/region.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/legend.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/dotplot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/linear.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/compatibility.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/linear.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/legend.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/codon_usage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/dotplot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/dinuc.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/dendrogram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/coevolution.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/best_likelihood.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/solved_models.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/substitution_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/simulate.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/best_likelihood.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/coevolution.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/models.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/substitution_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/predicate.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/simulate.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/text_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/nexus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/pdb_color.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/motif.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/xyzrn.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/rna_struct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/bedgraph.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/structure.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/pdb_color.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/text_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/xyzrn.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/nexus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/rna_struct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/stockholm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/bedgraph.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/solve.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/distance_transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/svd.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/matrix_logarithm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/geometry.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/fit_function.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/distance_transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/matrix_logarithm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/optimisers.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/svd.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/optimisers.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/solve.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/geometry.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix copying cogent/maths/matrix/distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix copying cogent/maths/matrix/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/jackknife.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/ks.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/distribution.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/rarefaction.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/histogram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/alpha_diversity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/test.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/histogram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/ks.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/special.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai -copying cogent/maths/stats/cai/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai +copying cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai copying cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai copying cogent/maths/stats/cai/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai -copying cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai +copying cogent/maths/stats/cai/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac -copying cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac copying cogent/maths/unifrac/fast_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac +copying cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac copying cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial copying cogent/maths/spatial/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif -copying cogent/motif/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif copying cogent/motif/k_word.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif copying cogent/motif/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif +copying cogent/motif/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/greengenes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/record.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/bowtie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/locuslink.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/column.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/flowgram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/flowgram_collection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cutg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/hmmscan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/sprinzl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/column.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/blast_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/locuslink.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/carnac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/nexus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/cigar.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/binary_sff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/mothur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/fastq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/macsim.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/bpseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/tree_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rna_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/flowgram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/bowtie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rfam.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/greengenes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/gcg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/aaindex.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rna_fold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/unigene.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/gbseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/bpseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_taxonomy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/ncbi_taxonomy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/structure.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/dotur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/gibbs.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/psl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/aaindex.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/record.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/structure.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/newick.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/mothur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/tinyseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/meme.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/gff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/psl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cutg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/ct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/gcg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/fastq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/illumina_sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/genbank.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/ebi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/paml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/tinyseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/dotur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/record_finder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rna_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/newick.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/sprinzl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/blast_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/infernal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rfam.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_taxonomy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/nexus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/record_finder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/stockholm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/meme.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/tree_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/unigene.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/binary_sff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/ebi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rna_fold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/paml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/genbank.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/illumina_sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/consensus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/tree_collection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/least_squares.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/nj.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/least_squares.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/tree_space.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/maximum_likelihood.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/tree_collection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation copying cogent/recalculation/setting.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation -copying cogent/recalculation/calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation -copying cogent/recalculation/definition.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation copying cogent/recalculation/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation copying cogent/recalculation/scope.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation +copying cogent/recalculation/calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation +copying cogent/recalculation/definition.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/usage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/analysis.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/randomization.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/randomization.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/microarray.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/pairs_util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/dihedral.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/contact.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/asa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/rna2d.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/manipulation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/annotation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/knots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/selection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/contact.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/knots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/asa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/option_parsing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/progress_display.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/dict_array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/trie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/dict2d.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/organizer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/recode_alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/parallel.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/checkpointing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/update_version.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/misc.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/dict_array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/recode_alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/datatypes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/warning.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/modules.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/terminal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/option_parsing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/datatypes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/update_version.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/misc.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/unit_test.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/progress_display.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/warning.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/modules.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/organizer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util running build_ext building 'cogent.align._compare' extension creating build @@ -2757,16 +2792,16 @@ BLASTMAT=/usr/share/ncbi/data/ RDP_JAR_PATH=/usr/share/java/rdp_classifier.jar /build/python-cogent-1.9/run_tests -v # --debug running build_ext building 'cogent.align._compare' extension -creating build/temp.linux-x86_64-2.7 -creating build/temp.linux-x86_64-2.7/cogent -creating build/temp.linux-x86_64-2.7/cogent/align -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_compare.c -o build/temp.linux-x86_64-2.7/cogent/align/_compare.o -creating build/lib.linux-x86_64-2.7 -creating build/lib.linux-x86_64-2.7/cogent -creating build/lib.linux-x86_64-2.7/cogent/align -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/align/_compare.o -o build/lib.linux-x86_64-2.7/cogent/align/_compare.so +creating build/temp.linux-i686-2.7 +creating build/temp.linux-i686-2.7/cogent +creating build/temp.linux-i686-2.7/cogent/align +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_compare.c -o build/temp.linux-i686-2.7/cogent/align/_compare.o +creating build/lib.linux-i686-2.7 +creating build/lib.linux-i686-2.7/cogent +creating build/lib.linux-i686-2.7/cogent/align +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/align/_compare.o -o build/lib.linux-i686-2.7/cogent/align/_compare.so building 'cogent.align._pairwise_seqs' extension -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_seqs.c -o build/temp.linux-x86_64-2.7/cogent/align/_pairwise_seqs.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_seqs.c -o build/temp.linux-i686-2.7/cogent/align/_pairwise_seqs.o cogent/align/_pairwise_seqs.c:2425:12: warning: '__pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_seqs_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_seqs_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, long *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2804,9 +2839,9 @@ cogent/align/_pairwise_seqs.c:3776:8: note: '__pyx_v_pointer_a' was declared here long __pyx_v_pointer_a; ^~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/align/_pairwise_seqs.o -o build/lib.linux-x86_64-2.7/cogent/align/_pairwise_seqs.so +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/align/_pairwise_seqs.o -o build/lib.linux-i686-2.7/cogent/align/_pairwise_seqs.so building 'cogent.align._pairwise_pogs' extension -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_pogs.c -o build/temp.linux-x86_64-2.7/cogent/align/_pairwise_pogs.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_pogs.c -o build/temp.linux-i686-2.7/cogent/align/_pairwise_pogs.o cogent/align/_pairwise_pogs.c:2458:12: warning: '__pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_pogs_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_pogs_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, long *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2844,10 +2879,10 @@ cogent/align/_pairwise_pogs.c:3819:8: note: '__pyx_v_pointer_a' was declared here long __pyx_v_pointer_a; ^~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/align/_pairwise_pogs.o -o build/lib.linux-x86_64-2.7/cogent/align/_pairwise_pogs.so +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/align/_pairwise_pogs.o -o build/lib.linux-i686-2.7/cogent/align/_pairwise_pogs.so building 'cogent.evolve._solved_models' extension -creating build/temp.linux-x86_64-2.7/cogent/evolve -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_solved_models.c -o build/temp.linux-x86_64-2.7/cogent/evolve/_solved_models.o +creating build/temp.linux-i686-2.7/cogent/evolve +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_solved_models.c -o build/temp.linux-i686-2.7/cogent/evolve/_solved_models.o cogent/evolve/_solved_models.c:2426:12: warning: '__pyx_fuse_2__pyx_f_6cogent_6evolve_14_solved_models_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_2__pyx_f_6cogent_6evolve_14_solved_models_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, int *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2857,19 +2892,19 @@ cogent/evolve/_solved_models.c:2120:12: warning: '__pyx_fuse_0__pyx_f_6cogent_6evolve_14_solved_models_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_0__pyx_f_6cogent_6evolve_14_solved_models_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, Py_ssize_t *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -creating build/lib.linux-x86_64-2.7/cogent/evolve -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/evolve/_solved_models.o -o build/lib.linux-x86_64-2.7/cogent/evolve/_solved_models.so +creating build/lib.linux-i686-2.7/cogent/evolve +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/evolve/_solved_models.o -o build/lib.linux-i686-2.7/cogent/evolve/_solved_models.so building 'cogent.evolve._likelihood_tree' extension -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_likelihood_tree.c -o build/temp.linux-x86_64-2.7/cogent/evolve/_likelihood_tree.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_likelihood_tree.c -o build/temp.linux-i686-2.7/cogent/evolve/_likelihood_tree.o cogent/evolve/_likelihood_tree.c:2307:12: warning: '__pyx_fuse_1__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_1__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, long *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cogent/evolve/_likelihood_tree.c:2177:12: warning: '__pyx_fuse_0__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_0__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, Py_ssize_t *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/evolve/_likelihood_tree.o -o build/lib.linux-x86_64-2.7/cogent/evolve/_likelihood_tree.so +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/evolve/_likelihood_tree.o -o build/lib.linux-i686-2.7/cogent/evolve/_likelihood_tree.so building 'cogent.evolve._pairwise_distance' extension -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_pairwise_distance.c -o build/temp.linux-x86_64-2.7/cogent/evolve/_pairwise_distance.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_pairwise_distance.c -o build/temp.linux-i686-2.7/cogent/evolve/_pairwise_distance.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2877,10 +2912,10 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/evolve/_pairwise_distance.o -o build/lib.linux-x86_64-2.7/cogent/evolve/_pairwise_distance.so +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/evolve/_pairwise_distance.o -o build/lib.linux-i686-2.7/cogent/evolve/_pairwise_distance.so building 'cogent.struct._asa' extension -creating build/temp.linux-x86_64-2.7/cogent/struct -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_asa.c -o build/temp.linux-x86_64-2.7/cogent/struct/_asa.o +creating build/temp.linux-i686-2.7/cogent/struct +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_asa.c -o build/temp.linux-i686-2.7/cogent/struct/_asa.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2888,10 +2923,10 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -creating build/lib.linux-x86_64-2.7/cogent/struct -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/struct/_asa.o -o build/lib.linux-x86_64-2.7/cogent/struct/_asa.so +creating build/lib.linux-i686-2.7/cogent/struct +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/struct/_asa.o -o build/lib.linux-i686-2.7/cogent/struct/_asa.so building 'cogent.struct._contact' extension -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_contact.c -o build/temp.linux-x86_64-2.7/cogent/struct/_contact.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_contact.c -o build/temp.linux-i686-2.7/cogent/struct/_contact.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2899,10 +2934,10 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/struct/_contact.o -o build/lib.linux-x86_64-2.7/cogent/struct/_contact.so +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/struct/_contact.o -o build/lib.linux-i686-2.7/cogent/struct/_contact.so building 'cogent.maths._period' extension -creating build/temp.linux-x86_64-2.7/cogent/maths -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/_period.c -o build/temp.linux-x86_64-2.7/cogent/maths/_period.o +creating build/temp.linux-i686-2.7/cogent/maths +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/_period.c -o build/temp.linux-i686-2.7/cogent/maths/_period.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2910,11 +2945,11 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -creating build/lib.linux-x86_64-2.7/cogent/maths -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/maths/_period.o -o build/lib.linux-x86_64-2.7/cogent/maths/_period.so +creating build/lib.linux-i686-2.7/cogent/maths +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/maths/_period.o -o build/lib.linux-i686-2.7/cogent/maths/_period.so building 'cogent.maths.spatial.ckd3' extension -creating build/temp.linux-x86_64-2.7/cogent/maths/spatial -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/spatial/ckd3.c -o build/temp.linux-x86_64-2.7/cogent/maths/spatial/ckd3.o +creating build/temp.linux-i686-2.7/cogent/maths/spatial +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/spatial/ckd3.c -o build/temp.linux-i686-2.7/cogent/maths/spatial/ckd3.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2922,18 +2957,18 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -creating build/lib.linux-x86_64-2.7/cogent/maths/spatial -i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cogent/maths/spatial/ckd3.o -o build/lib.linux-x86_64-2.7/cogent/maths/spatial/ckd3.so -copying build/lib.linux-x86_64-2.7/cogent/align/_compare.so -> cogent/align -copying build/lib.linux-x86_64-2.7/cogent/align/_pairwise_seqs.so -> cogent/align -copying build/lib.linux-x86_64-2.7/cogent/align/_pairwise_pogs.so -> cogent/align -copying build/lib.linux-x86_64-2.7/cogent/evolve/_solved_models.so -> cogent/evolve -copying build/lib.linux-x86_64-2.7/cogent/evolve/_likelihood_tree.so -> cogent/evolve -copying build/lib.linux-x86_64-2.7/cogent/evolve/_pairwise_distance.so -> cogent/evolve -copying build/lib.linux-x86_64-2.7/cogent/struct/_asa.so -> cogent/struct -copying build/lib.linux-x86_64-2.7/cogent/struct/_contact.so -> cogent/struct -copying build/lib.linux-x86_64-2.7/cogent/maths/_period.so -> cogent/maths -copying build/lib.linux-x86_64-2.7/cogent/maths/spatial/ckd3.so -> cogent/maths/spatial +creating build/lib.linux-i686-2.7/cogent/maths/spatial +i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-2.7/cogent/maths/spatial/ckd3.o -o build/lib.linux-i686-2.7/cogent/maths/spatial/ckd3.so +copying build/lib.linux-i686-2.7/cogent/align/_compare.so -> cogent/align +copying build/lib.linux-i686-2.7/cogent/align/_pairwise_seqs.so -> cogent/align +copying build/lib.linux-i686-2.7/cogent/align/_pairwise_pogs.so -> cogent/align +copying build/lib.linux-i686-2.7/cogent/evolve/_solved_models.so -> cogent/evolve +copying build/lib.linux-i686-2.7/cogent/evolve/_likelihood_tree.so -> cogent/evolve +copying build/lib.linux-i686-2.7/cogent/evolve/_pairwise_distance.so -> cogent/evolve +copying build/lib.linux-i686-2.7/cogent/struct/_asa.so -> cogent/struct +copying build/lib.linux-i686-2.7/cogent/struct/_contact.so -> cogent/struct +copying build/lib.linux-i686-2.7/cogent/maths/_period.so -> cogent/maths +copying build/lib.linux-i686-2.7/cogent/maths/spatial/ckd3.so -> cogent/maths/spatial Can't find blat executable: skipping test Can't find carnac executable: skipping test Can't find cmfinder.pl executable: skipping test @@ -9592,7 +9627,7 @@ Tests for ungapped_to_pdb function using protein pdb chains. ... ok ---------------------------------------------------------------------- -Ran 3397 tests in 46.991s +Ran 3397 tests in 114.297s OK # restore original tests file @@ -9616,737 +9651,737 @@ creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/greengenes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bowtie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/locuslink.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/column.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram_collection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cutg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/hmmscan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sprinzl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/column.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/locuslink.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/carnac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cigar.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/binary_sff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mothur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/fastq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/macsim.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bpseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bowtie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/greengenes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gcg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/aaindex.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_fold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unigene.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gbseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bpseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_taxonomy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ncbi_taxonomy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dotur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gibbs.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/psl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/aaindex.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/newick.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mothur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tinyseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/meme.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/psl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cutg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gcg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/fastq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/illumina_sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/genbank.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ebi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tinyseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dotur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record_finder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/newick.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sprinzl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/infernal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_taxonomy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record_finder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/meme.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unigene.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/binary_sff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ebi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_fold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/text_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/motif.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/xyzrn.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/rna_struct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb_color.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/bedgraph.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/approximate_mds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/procrustes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/nmds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ncbi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/name.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/genome.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/related_region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/species.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/host.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/database.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/genbank.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/illumina_sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/align.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/algorithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_pogs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_positions.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pairwise.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pycompare.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_compare.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_seqs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/methods.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/dp_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/traceback.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/progressive.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/k_word.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/consensus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/tree_collection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/least_squares.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/nj.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/least_squares.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/tree_space.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/maximum_likelihood.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/trie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/organizer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/parallel.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/checkpointing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/update_version.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/misc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict_array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/recode_alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/datatypes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/terminal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/option_parsing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/unit_test.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/progress_display.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/warning.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/modules.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/entity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/info.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/location.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/moltype.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/profile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/genetic_code.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/bitvector.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alphabet.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/tree_collection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_solved_models.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/solved_models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_pairwise_distance.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/simulate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/best_likelihood.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_likelihood_tree.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/coevolution.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/predicate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/analysis.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/randomization.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/nucleic_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/energy_params.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/protein_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/ligand_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/molecular_weight.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb_color.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/motif.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/bedgraph.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/text_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/xyzrn.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/rna_struct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/bwa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfffile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sffinfo.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fastq_join.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/carnac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parameters.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rtax.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cd_hit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clustalw.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/vienna_package.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mothur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cdbfasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/flash.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pplacer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/seqprep.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/gctmpca.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml_v730.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cdbfasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/formatdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clearcut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/uclust.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/usearch.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mafft.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mothur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/uclust.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/gctmpca.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cd_hit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfffile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle_v38.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sffinfo.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clearcut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dotur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fastq_join.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/infernal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/guppy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parsinsert.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pandaseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/vienna_package.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pplacer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml_v730.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/usearch.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mafft.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blat.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/legend.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/linear.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/compatibility.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/codon_usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dotplot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dinuc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dendrogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clustalw.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parsinsert.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/guppy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pandaseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/infernal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parameters.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/bwa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/approximate_mds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/nmds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/procrustes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_contact.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/pairs_util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/dihedral.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/contact.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/asa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_contact.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/rna2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/manipulation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/knots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_asa.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/selection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_compare.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/align.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_positions.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_pogs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pairwise.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/dp_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pycompare.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/methods.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_seqs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/algorithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/progressive.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/traceback.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/contact.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/knots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/asa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/genome.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/related_region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/species.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/host.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/name.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/database.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ncbi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/location.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/info.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/bitvector.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/entity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alphabet.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/genetic_code.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/moltype.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/profile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/option_parsing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/progress_display.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict_array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/trie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/recode_alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/parallel.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/checkpointing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/warning.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/modules.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/terminal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/datatypes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/update_version.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/misc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/unit_test.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/organizer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/_period.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/fit_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/distance_transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_logarithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/svd.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/solve.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/distance_transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/svd.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_logarithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/geometry.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/jackknife.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/ks.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/distribution.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/rarefaction.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/histogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/alpha_diversity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/test.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/histogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/ks.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/special.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/_period.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/geometry.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/fit_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial/ckd3.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/analysis.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/randomization.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/k_word.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/coevolution.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/best_likelihood.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_likelihood_tree.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/solved_models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_pairwise_distance.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/predicate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/simulate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_solved_models.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial/ckd3.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dotplot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/compatibility.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/linear.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/legend.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/codon_usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dinuc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dendrogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/setting.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/definition.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/scope.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py to greengenes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unafold.py to unafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dialign.py to dialign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record.py to record.pyc +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/definition.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py to kegg_pos.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py to bowtie.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/locuslink.py to locuslink.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cmfinder.py to cmfinder.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/column.py to column.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py to knetfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py to flowgram.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_collection.py to flowgram_collection.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cutg.py to cutg.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/hmmscan.py to hmmscan.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py to sprinzl.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/column.py to column.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_parser.py to flowgram_parser.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/clustal.py to clustal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast_xml.py to blast_xml.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/contrafold.py to contrafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/locuslink.py to locuslink.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/carnac.py to carnac.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mfold.py to mfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rdb.py to rdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml_matrix.py to paml_matrix.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/nexus.py to nexus.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py to dynalign.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cigar.py to cigar.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/binary_sff.py to binary_sff.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mothur.py to mothur.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/phylip.py to phylip.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/fastq.py to fastq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/comrna.py to comrna.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dialign.py to dialign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unafold.py to unafold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/table.py to table.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/macsim.py to macsim.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py to bpseq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree_xml.py to tree_xml.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnashapes.py to rnashapes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaforester.py to rnaforester.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ilm.py to ilm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cut.py to cut.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/consan.py to consan.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py to rna_plot.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/fasta.py to fasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py to flowgram.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py to kegg_pos.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py to bowtie.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pdb.py to pdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py to rnaview.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rfam.py to rfam.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py to pknotsrg.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/msms.py to msms.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cut.py to cut.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py to greengenes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sfold.py to sfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/clustal.py to clustal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_fasta.py to kegg_fasta.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gcg.py to gcg.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py to aaindex.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py to rna_fold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unigene.py to unigene.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gbseq.py to gbseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py to bpseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cmfinder.py to cmfinder.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_taxonomy.py to kegg_taxonomy.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ncbi_taxonomy.py to ncbi_taxonomy.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py to knetfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/structure.py to structure.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dotur.py to dotur.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gibbs.py to gibbs.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mage.py to mage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast.py to blast.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/psl.py to psl.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py to rnaview.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py to aaindex.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stride.py to stride.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/msms.py to msms.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py to agilent_microarray.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/comrna.py to comrna.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record.py to record.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaalifold.py to rnaalifold.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pfold.py to pfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/structure.py to structure.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/newick.py to newick.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mothur.py to mothur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_fasta.py to kegg_fasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cove.py to cove.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py to tinyseq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/meme.py to meme.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gff.py to gff.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/psl.py to psl.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ilm.py to ilm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/consan.py to consan.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cutg.py to cutg.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_parser.py to flowgram_parser.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ct.py to ct.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sequence.py to sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaalifold.py to rnaalifold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gcg.py to gcg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/fastq.py to fastq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/illumina_sequence.py to illumina_sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/genbank.py to genbank.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ebi.py to ebi.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rdb.py to rdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/contrafold.py to contrafold.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/nupack.py to nupack.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py to foldalign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml.py to paml.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py to tinyseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dotur.py to dotur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record_finder.py to record_finder.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py to kegg_ko.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml_matrix.py to paml_matrix.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py to rna_plot.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/newick.py to newick.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast.py to blast.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaforester.py to rnaforester.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sequence.py to sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py to sprinzl.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py to agilent_microarray.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast_xml.py to blast_xml.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/infernal.py to infernal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rfam.py to rfam.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_taxonomy.py to kegg_taxonomy.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sfold.py to sfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/nexus.py to nexus.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record_finder.py to record_finder.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stockholm.py to stockholm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/meme.py to meme.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree_xml.py to tree_xml.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pdb.py to pdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unigene.py to unigene.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/binary_sff.py to binary_sff.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/table.py to table.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/phylip.py to phylip.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ebi.py to ebi.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py to pknotsrg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py to dynalign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py to rna_fold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/alignment.py to alignment.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/clustal.py to clustal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/text_tree.py to text_tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/nexus.py to nexus.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/motif.py to motif.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/fasta.py to fasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py to xyzrn.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/mage.py to mage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py to rna_struct.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/structure.py to structure.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py to pdb_color.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/stockholm.py to stockholm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb.py to pdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/table.py to table.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/phylip.py to phylip.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py to bedgraph.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py to approximate_mds.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py to procrustes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py to UPGMA.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py to metric_scaling.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py to goodness_of_fit.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py to nmds.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ncbi.py to ncbi.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py to name.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py to compara.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py to genome.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py to assembly.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py to sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py to related_region.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py to species.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py to host.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py to feature_level.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py to database.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py to region.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/rfam.py to rfam.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/pdb.py to pdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/distance.py to distance.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py to foldalign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py to kegg_ko.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml.py to paml.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mfold.py to mfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stride.py to stride.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/genbank.py to genbank.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cove.py to cove.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mage.py to mage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/illumina_sequence.py to illumina_sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/align.py to align.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py to algorithm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py to indel_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py to indel_positions.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py to pairwise.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py to pycompare.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py to methods.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py to dp_calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/traceback.py to traceback.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/progressive.py to progressive.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/k_word.py to k_word.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/util.py to util.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/consensus.py to consensus.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/tree_collection.py to tree_collection.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py to least_squares.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/nj.py to nj.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py to least_squares.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/tree_space.py to tree_space.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/maximum_likelihood.py to maximum_likelihood.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/trie.py to trie.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict2d.py to dict2d.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/organizer.py to organizer.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/parallel.py to parallel.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py to checkpointing.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/update_version.py to update_version.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/array.py to array.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/misc.py to misc.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict_array.py to dict_array.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py to recode_alignment.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/datatypes.py to datatypes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/terminal.py to terminal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py to option_parsing.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/transform.py to transform.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/unit_test.py to unit_test.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/table.py to table.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/progress_display.py to progress_display.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/warning.py to warning.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/modules.py to modules.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alignment.py to alignment.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/entity.py to entity.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/usage.py to usage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/info.py to info.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/location.py to location.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/moltype.py to moltype.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/profile.py to profile.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py to genetic_code.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/tree.py to tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/sequence.py to sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/bitvector.py to bitvector.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alphabet.py to alphabet.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/annotation.py to annotation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/distance.py to distance.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/tree_collection.py to tree_collection.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py to solved_models.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py to simulate.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py to pairwise_distance.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py to best_likelihood.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py to coevolution.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/models.py to models.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py to substitution_calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py to likelihood_calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py to motif_prob_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py to substitution_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py to bootstrap.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py to parameter_controller.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py to predicate.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py to likelihood_tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py to discrete_markov.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py to likelihood_function.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py to usage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py to analysis.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py to birth_death.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py to markov.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py to randomization.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py to searchpath.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py to microarray_normalize.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py to microarray.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py to sequence_generators.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py to nucleic_properties.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/energy_params.py to energy_params.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py to protein_properties.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py to ligand_properties.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py to molecular_weight.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/unafold.py to unafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dialign.py to dialign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/bwa.py to bwa.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfffile.py to sfffile.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py to contrafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py to pdb_color.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/motif.py to motif.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/phylip.py to phylip.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/table.py to table.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/fasta.py to fasta.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb.py to pdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/clustal.py to clustal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py to bedgraph.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/structure.py to structure.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/text_tree.py to text_tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/alignment.py to alignment.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py to xyzrn.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/nexus.py to nexus.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py to rna_struct.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/stockholm.py to stockholm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/mage.py to mage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py to sffinfo.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fastq_join.py to fastq_join.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py to cmfinder.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/knetfold.py to knetfold.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/carnac.py to carnac.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mfold.py to mfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parameters.py to parameters.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py to rdp_classifier20.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dynalign.py to dynalign.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rtax.py to rtax.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree.py to fasttree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py to cd_hit.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clustalw.py to clustalw.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py to rnashapes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py to rnaforester.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/ilm.py to ilm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/consan.py to consan.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py to vienna_package.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mothur.py to mothur.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cdbfasta.py to cdbfasta.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/flash.py to flash.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pplacer.py to pplacer.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/comrna.py to comrna.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/seqprep.py to seqprep.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py to cmfinder.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py to gctmpca.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py to raxml_v730.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/knetfold.py to knetfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cdbfasta.py to cdbfasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml.py to raxml.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dialign.py to dialign.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/formatdb.py to formatdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blast.py to blast.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/unafold.py to unafold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml.py to raxml.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py to rnashapes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clearcut.py to clearcut.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py to rdp_classifier.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/uclust.py to uclust.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaview.py to rnaview.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/usearch.py to usearch.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/stride.py to stride.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py to pknotsrg.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/msms.py to msms.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/comrna.py to comrna.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pfold.py to pfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mafft.py to mafft.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle.py to muscle.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mothur.py to mothur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/uclust.py to uclust.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cove.py to cove.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree.py to fasttree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfold.py to sfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py to gctmpca.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py to cd_hit.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfffile.py to sfffile.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle_v38.py to muscle_v38.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py to fasttree_v1.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py to rnaalifold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py to sffinfo.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clearcut.py to clearcut.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/nupack.py to nupack.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/foldalign.py to foldalign.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dotur.py to dotur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fastq_join.py to fastq_join.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/infernal.py to infernal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py to rdp_classifier.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/guppy.py to guppy.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py to parsinsert.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pandaseq.py to pandaseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfold.py to sfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py to vienna_package.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pplacer.py to pplacer.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py to raxml_v730.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/usearch.py to usearch.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py to rnaalifold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pfold.py to pfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py to rdp_classifier20.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/ilm.py to ilm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/consan.py to consan.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle.py to muscle.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mafft.py to mafft.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blat.py to blat.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py to pknotsrg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dynalign.py to dynalign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/legend.py to legend.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py to fancy_arrow.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py to distribution_plots.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py to arrow_rates.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/linear.py to linear.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py to rlg2mpl.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py to compatibility.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py to codon_usage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py to dotplot.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py to multivariate_plot.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py to dinuc.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py to dendrogram.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clustalw.py to clustalw.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py to parsinsert.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py to contrafold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/guppy.py to guppy.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/nupack.py to nupack.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blast.py to blast.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py to rnaforester.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py to fasttree_v1.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pandaseq.py to pandaseq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/infernal.py to infernal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parameters.py to parameters.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/foldalign.py to foldalign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mfold.py to mfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/stride.py to stride.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/bwa.py to bwa.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cove.py to cove.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py to approximate_mds.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py to nmds.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py to metric_scaling.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py to goodness_of_fit.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py to procrustes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py to UPGMA.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/pairs_util.py to pairs_util.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/dihedral.py to dihedral.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/contact.py to contact.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/asa.py to asa.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/rna2d.py to rna2d.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/manipulation.py to manipulation.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/annotation.py to annotation.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/knots.py to knots.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/selection.py to selection.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/align.py to align.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py to indel_positions.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py to pairwise.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py to dp_calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py to pycompare.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py to methods.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py to algorithm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/progressive.py to progressive.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/traceback.py to traceback.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py to indel_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/contact.py to contact.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/knots.py to knots.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/asa.py to asa.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py to feature_level.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py to genome.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py to related_region.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py to assembly.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py to region.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py to species.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py to host.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py to name.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py to compara.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py to database.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py to sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/pdb.py to pdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/rfam.py to rfam.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ncbi.py to ncbi.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/location.py to location.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/usage.py to usage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/info.py to info.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/bitvector.py to bitvector.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/entity.py to entity.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/annotation.py to annotation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alphabet.py to alphabet.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py to genetic_code.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/moltype.py to moltype.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/profile.py to profile.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alignment.py to alignment.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/sequence.py to sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py to option_parsing.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/progress_display.py to progress_display.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict_array.py to dict_array.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/trie.py to trie.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/table.py to table.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict2d.py to dict2d.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py to recode_alignment.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/parallel.py to parallel.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/transform.py to transform.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py to checkpointing.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/warning.py to warning.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/modules.py to modules.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/terminal.py to terminal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/datatypes.py to datatypes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/update_version.py to update_version.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/misc.py to misc.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/unit_test.py to unit_test.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/array.py to array.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/organizer.py to organizer.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py to matrix_exponentiation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/fit_function.py to fit_function.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/simannealingoptimiser.py to simannealingoptimiser.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py to distance_transform.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_logarithm.py to matrix_logarithm.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponential_integration.py to matrix_exponential_integration.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/optimisers.py to optimisers.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py to distance.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/svd.py to svd.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py to scipy_optimisers.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py to function_optimisation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/markov.py to markov.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/period.py to period.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py to fast_tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py to fast_unifrac.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/solve.py to solve.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py to distance_transform.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py to matrix_exponentiation.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimize.py to scipy_optimize.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/period.py to period.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/svd.py to svd.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_logarithm.py to matrix_logarithm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/geometry.py to geometry.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/jackknife.py to jackknife.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py to kendall.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py to ks.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py to get_by_cai.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py to adaptor.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/distribution.py to distribution.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py to period.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/rarefaction.py to rarefaction.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/histogram.py to histogram.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/alpha_diversity.py to alpha_diversity.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py to kendall.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/test.py to test.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py to information_criteria.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py to period.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/histogram.py to histogram.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py to adaptor.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py to get_by_cai.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py to information_criteria.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py to ks.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py to util.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/special.py to special.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py to distance.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/simannealingoptimiser.py to simannealingoptimiser.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/geometry.py to geometry.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/fit_function.py to fit_function.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/markov.py to markov.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py to function_optimisation.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py to fast_unifrac.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py to fast_tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py to scipy_optimisers.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/optimisers.py to optimisers.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py to usage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py to sequence_generators.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py to analysis.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py to birth_death.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py to searchpath.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py to tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py to randomization.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py to markov.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py to microarray_normalize.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py to microarray.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/k_word.py to k_word.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py to likelihood_function.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py to coevolution.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py to likelihood_tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py to best_likelihood.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py to substitution_calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py to parameter_controller.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py to solved_models.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py to discrete_markov.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py to substitution_model.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py to pairwise_distance.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py to motif_prob_model.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py to bootstrap.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/models.py to models.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py to likelihood_calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py to predicate.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py to simulate.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py to dotplot.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py to distribution_plots.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py to rlg2mpl.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py to compatibility.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/linear.py to linear.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py to fancy_arrow.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py to arrow_rates.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/legend.py to legend.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py to codon_usage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py to dinuc.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py to dendrogram.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py to multivariate_plot.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/setting.py to setting.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py to calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py to definition.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/scope.py to scope.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py to calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py to definition.pyc running install_egg_info running egg_info creating cogent.egg-info @@ -10369,16 +10404,16 @@ make[1]: Leaving directory '/build/python-cogent-1.9' dh_installchangelogs -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild -I: dh_python2 fs:343: renaming _asa.so to _asa.i386-linux-gnu.so -I: dh_python2 fs:343: renaming _contact.so to _contact.i386-linux-gnu.so I: dh_python2 fs:343: renaming _compare.so to _compare.i386-linux-gnu.so I: dh_python2 fs:343: renaming _pairwise_pogs.so to _pairwise_pogs.i386-linux-gnu.so I: dh_python2 fs:343: renaming _pairwise_seqs.so to _pairwise_seqs.i386-linux-gnu.so -I: dh_python2 fs:343: renaming _period.so to _period.i386-linux-gnu.so -I: dh_python2 fs:343: renaming ckd3.so to ckd3.i386-linux-gnu.so I: dh_python2 fs:343: renaming _likelihood_tree.so to _likelihood_tree.i386-linux-gnu.so I: dh_python2 fs:343: renaming _pairwise_distance.so to _pairwise_distance.i386-linux-gnu.so I: dh_python2 fs:343: renaming _solved_models.so to _solved_models.i386-linux-gnu.so +I: dh_python2 fs:343: renaming _asa.so to _asa.i386-linux-gnu.so +I: dh_python2 fs:343: renaming _contact.so to _contact.i386-linux-gnu.so +I: dh_python2 fs:343: renaming _period.so to _period.i386-linux-gnu.so +I: dh_python2 fs:343: renaming ckd3.so to ckd3.i386-linux-gnu.so dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -10394,7 +10429,7 @@ debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/python-cogent-1.9' dh_shlibdeps -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_pogs.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/_contact.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/_asa.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/_compare.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial/ckd3.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/_pairwise_distance.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/_likelihood_tree.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/_solved_models.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/_period.i386-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_pogs.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial/ckd3.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/_solved_models.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/_contact.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/_likelihood_tree.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/_compare.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/_pairwise_distance.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/_asa.i386-linux-gnu.so debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/_period.i386-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_numpy make[1]: Leaving directory '/build/python-cogent-1.9' dh_installdeb -O--buildsystem=pybuild @@ -10407,20 +10442,22 @@ dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-cogent-dbgsym' in '../python-cogent-dbgsym_1.9-14_i386.deb'. -dpkg-deb: building package 'python-cogent' in '../python-cogent_1.9-14_i386.deb'. dpkg-deb: building package 'python-cogent-doc' in '../python-cogent-doc_1.9-14_all.deb'. +dpkg-deb: building package 'python-cogent' in '../python-cogent_1.9-14_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-cogent_1.9-14_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/18050/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18050/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2969 and its subdirectories -I: Current time: Sat Jul 31 05:09:23 -12 2021 -I: pbuilder-time-stamp: 1627751363 +I: removing directory /srv/workspace/pbuilder/18050 and its subdirectories +I: Current time: Mon Jun 29 01:37:57 +14 2020 +I: pbuilder-time-stamp: 1593344277