Diff of the two buildlogs: -- --- b1/build.log 2020-06-27 23:36:10.040859915 +0000 +++ b2/build.log 2020-06-27 23:39:16.237604155 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 27 11:18:43 -12 2020 -I: pbuilder-time-stamp: 1593299923 +I: Current time: Sat Jul 31 19:59:06 +14 2021 +I: pbuilder-time-stamp: 1627711146 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 1 13:44:11 2019 -12 +gpgv: Signature made Wed Jan 2 15:44:11 2019 +14 gpgv: using RSA key 90E2D2C1AD146A1B7EBB891DBBC17EBB1396F2F7 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pymol_2.2.0+dfsg-4.dsc @@ -41,138 +41,172 @@ dpkg-source: info: applying 70_glext-fix.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/20499/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='f7046bf21d424cce9327c3082e5fa19e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='20499' - PS1='# ' - PS2='> ' + INVOCATION_ID=a9c47cd7f7b9452bbf3cf1ec82e70c6e + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18077 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q2XN2tiLW2/pbuilderrc_15kE --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q2XN2tiLW2/b1 --logfile b1/build.log pymol_2.2.0+dfsg-4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q2XN2tiLW2/pbuilderrc_5MHB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q2XN2tiLW2/b2 --logfile b2/build.log pymol_2.2.0+dfsg-4.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux profitbricks-build12-i386 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) x86_64 GNU/Linux I: ls -l /bin - total 5508 - -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown - -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp - -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash - -rwxr-xr-x 1 root root 120676 Feb 28 2019 date - -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd - -rwxr-xr-x 1 root root 100620 Feb 28 2019 df - -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir - -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 34532 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 30112 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln - -rwxr-xr-x 1 root root 55400 Jul 26 2018 login - -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls - -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 42348 Jan 9 2019 more - -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount - -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm - -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 24 20:26 sh -> dash - -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty - -rwsr-xr-x 1 root root 71072 Jan 9 2019 su - -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync - -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar - -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch - -rwxr-xr-x 1 root root 34532 Feb 28 2019 true - -rwxr-xr-x 1 root root 17768 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount - -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/20499/tmp/hooks/D02_print_environment finished + total 5476 + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 31 19:59 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 30 04:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -532,7 +566,7 @@ Get: 282 http://deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 283 http://deb.debian.org/debian buster/main i386 texlive-base all 2018.20190227-2 [19.7 MB] Get: 284 http://deb.debian.org/debian buster/main i386 texlive-latex-base all 2018.20190227-2 [984 kB] -Fetched 241 MB in 1min 59s (2028 kB/s) +Fetched 241 MB in 5s (51.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -1716,7 +1750,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/pymol-2.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/pymol-2.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.2.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -1761,19 +1795,29 @@ copying modules/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt +copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo -copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup +copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup -copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu @@ -1781,218 +1825,208 @@ creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax -copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax -copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax +copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax +copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed +copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo +copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry -copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 -copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk -copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry +copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry +copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal +copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal -copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ -copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ +copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol -copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl -copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol -copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol +copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin -copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin -copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin +copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin +copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin -copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin +copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin +copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins +copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl -copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-i386-2.7 @@ -2015,19 +2049,22 @@ creating build/temp.linux-i386-2.7/ov creating build/temp.linux-i386-2.7/ov/src i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-i386-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': -contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] - int i, numatoms; - ^~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); @@ -2035,15 +2072,74 @@ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': -contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] - fread(&filen, sizeof(namdbin_int32), 1, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dataBegin, sizeof(int), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); @@ -2058,16 +2154,250 @@ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return ok; ^~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&headersize, sizeof(int), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if (NULL == fgets(fbuffer, 1024, data->file)) + ^~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + if (NULL == fgets(fbuffer, 1024, data->file)) + ^~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(fbuffer, 1024, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(fbuffer, 1024, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': +contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] + int i, numatoms; + ^~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': +contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] + fread(&filen, sizeof(namdbin_int32), 1, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dataBegin, sizeof(int), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static qmdata_t* init_qmdata() { + ^~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static qmdata_t* init_qmdata() { + ^~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] + molfile_qm_hessian_t *hessian_data; + ^~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] + char word[3][BUFSIZ]; + ^~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, " Ene= %f\n", &orbenergy); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, " Spin= %s\n", spin); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, " Occup= %f\n", &occu); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1024, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, "%d", &natm); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] + char word[7][BUFSIZ]; + ^~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] + sprintf(atom->resname, "%d", resid); + ^~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] + sprintf(atom->resname, "%d", resid); + ^~~~ +In file included from /usr/include/stdio.h:873, + from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] + char word[6][BUFSIZ]; + ^~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1024, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Charges[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Masses[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Rk[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Req[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Tk[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Teq[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Pk[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Pn[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Phase[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Solty[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Cn1[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Cn2[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->HB12[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->HB6[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &H[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Box[0], &prm->Box[1], &prm->Box[2]); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Natcap, &prm->Cutcap, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Xcap, &prm->Ycap, &prm->Zcap); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(datablock, total * sizeof(float), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (&len, sizeof(int), 1, fp); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (str, len, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 1, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 1, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 2, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 2, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 4, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 4, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 4, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 8, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: +contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fread(): rc %ld sz: %ld\n", rc, size); + ~~^ ~~ + %lld +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fread(): rc %ld sz: %ld\n", rc, size); + ~~^ ~~~~ + %lld +contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", + ~~^ + %lld + rc, size, szleft, writecalls); + ~~ +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", + ~~^ + %lld + rc, size, szleft, writecalls); + ~~~~ +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", + ~~^ + %lld + rc, size, szleft, writecalls); + ~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1023, cube->fd); // go on to next line + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1023, cube->fd); // skip second header line + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1023, cube->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1023, cube->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(cube->fd, "%d", &cube->nsets); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(cube->fd, "%d", &orb); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1023, cube->fd); // gobble up rest of line + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); @@ -2098,34 +2428,14 @@ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1023, cube->fd); // go on to next line - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1023, cube->fd); // skip second header line - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1023, cube->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1023, cube->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(cube->fd, "%d", &cube->nsets); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(cube->fd, "%d", &orb); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1023, cube->fd); // gobble up rest of line - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:141:32: warning: function declaration isn't a prototype [-Wstrict-prototypes] static abinit_binary_header_t *abinit_header_malloc() ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:154:29: warning: function declaration isn't a prototype [-Wstrict-prototypes] static abinit_plugindata_t *abinit_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] @@ -2138,6 +2448,10 @@ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(symData, 81, fd); + ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); @@ -2153,75 +2467,44 @@ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static qmdata_t* init_qmdata() { + ^~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, "%3s", keyWord); - ~~~~~~^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %f %f %f %f %f %f", keyWord, - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %f", keyWord, &prod); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %f", keyWord, &plus); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, " %s %f", keyWord, &sigma); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:39: -contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static vasp_plugindata_t *vasp_plugindata_malloc() - ^~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(fileHeader, sizeof(short), 19, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); @@ -2230,17 +2513,7 @@ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] - double timesteprst; - ^~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(title, 82, fd); - ^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 82, fd); - ^~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); @@ -2278,77 +2551,51 @@ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] + double timesteprst; + ^~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(title, 82, fd); + ^~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 82, fd); + ^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(brick, sizeof(char), 512, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, "%3s", keyWord); + ~~~~~~^~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %f %f %f %f %f %f", keyWord, + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %f", keyWord, &prod); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %f", keyWord, &plus); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, " %s %f", keyWord, &sigma); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); @@ -2427,7 +2674,7 @@ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] @@ -2457,103 +2704,78 @@ %lld rc, size, szleft, writecalls); ~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: -contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static vasp_plugindata_t *vasp_plugindata_malloc() - ^~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] - sprintf(atom->resname, "%d", resid); - ^~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] - sprintf(atom->resname, "%d", resid); - ^~~~ -In file included from /usr/include/stdio.h:873, - from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(nextline, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static qmdata_t* init_qmdata() { - ^~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] - molfile_qm_hessian_t *hessian_data; - ^~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, " Ene= %f\n", &orbenergy); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, " Spin= %s\n", spin); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, " Occup= %f\n", &occu); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1024, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, "%d", &natm); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dataBegin, sizeof(int), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(symData, 81, fd); - ~~~~~^~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] + sprintf(data->basis_string, "%d-%s%sG%s", + ^~ + ngauss, (data->gbasis+1), diffuse, + ~~~~~~~ +In file included from /usr/include/stdio.h:873, + from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, + from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] + sprintf(data->basis_string, "STO-%dG%s%s", + ^~ + ngauss, diffuse, polarization); + ~~~~~~~ +In file included from /usr/include/stdio.h:873, + from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, + from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); @@ -2569,243 +2791,14 @@ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(intHeader, sizeof(int), 5, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(floatHeader, sizeof(float), 6, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(datablock, total * sizeof(float), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Charges[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Masses[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Rk[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Req[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Tk[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Teq[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Pk[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Pn[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Phase[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Solty[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Cn1[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Cn2[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->HB12[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->HB6[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &H[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Box[0], &prm->Box[1], &prm->Box[2]); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Natcap, &prm->Cutcap, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Xcap, &prm->Ycap, &prm->Zcap); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static qmdata_t* init_qmdata() { - ^~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] - char word[3][BUFSIZ]; - ^~~~ -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] - char word[7][BUFSIZ]; - ^~~~ -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] - char word[6][BUFSIZ]; - ^~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1024, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (&len, sizeof(int), 1, fp); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (str, len, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 1, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 1, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 2, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 2, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 4, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 4, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 4, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 8, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: -contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static vasp_plugindata_t *vasp_plugindata_malloc() - ^~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:39: -contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static vasp_plugindata_t *vasp_plugindata_malloc() - ^~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] - strncpy(tmptype, atom->type, sizeof(atom->type)); - ^ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&headersize, sizeof(int), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); @@ -2839,88 +2832,93 @@ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if (NULL == fgets(fbuffer, 1024, data->file)) - ^~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - if (NULL == fgets(fbuffer, 1024, data->file)) - ^~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(fbuffer, 1024, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(fbuffer, 1024, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] - static qmdata_t* init_qmdata() { - ^~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dataBegin, sizeof(int), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-i386-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-i386-2.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-i386-2.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] - sprintf(data->basis_string, "%d-%s%sG%s", - ^~ - ngauss, (data->gbasis+1), diffuse, - ~~~~~~~ -In file included from /usr/include/stdio.h:873, - from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, - from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] - sprintf(data->basis_string, "STO-%dG%s%s", - ^~ - ngauss, diffuse, polarization); - ~~~~~~~ -In file included from /usr/include/stdio.h:873, - from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, - from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: -contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fread(): rc %ld sz: %ld\n", rc, size); - ~~^ ~~ - %lld -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fread(): rc %ld sz: %ld\n", rc, size); - ~~^ ~~~~ - %lld -contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", - ~~^ - %lld - rc, size, szleft, writecalls); - ~~ -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", - ~~^ - %lld - rc, size, szleft, writecalls); - ~~~~ -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", - ~~^ - %lld - rc, size, szleft, writecalls); - ~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-i386-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:39: +contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static vasp_plugindata_t *vasp_plugindata_malloc() + ^~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: +contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static vasp_plugindata_t *vasp_plugindata_malloc() + ^~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:46: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() @@ -2939,38 +2937,49 @@ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(intHeader, sizeof(int), 5, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(floatHeader, sizeof(float), 6, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-i386-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-i386-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-i386-2.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-i386-2.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': @@ -3004,26 +3013,92 @@ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(brick, sizeof(char), 512, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(fileHeader, sizeof(short), 19, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: +contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static vasp_plugindata_t *vasp_plugindata_malloc() + ^~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:39: +contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] + static vasp_plugindata_t *vasp_plugindata_malloc() + ^~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] + strncpy(tmptype, atom->type, sizeof(atom->type)); + ^ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-i386-2.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-i386-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-i386-2.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': -contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] - sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", - ^~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-i386-2.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-i386-2.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] @@ -3032,58 +3107,63 @@ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-i386-2.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-i386-2.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-i386-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-i386-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-i386-2.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': +contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] + sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", + ^~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-i386-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-i386-2.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-i386-2.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-i386-2.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-i386-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-i386-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(nextline, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-i386-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-i386-2.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1024, fd); // go on to next line + ~~~~~^~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-i386-2.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-i386-2.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-i386-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-i386-2.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-i386-2.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-i386-2.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-i386-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-i386-2.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-i386-2.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); @@ -3254,39 +3334,8 @@ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-i386-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1024, fd); // go on to next line - ~~~~~^~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-i386-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-i386-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-i386-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-i386-2.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(answer, "%03x/", d1); @@ -3311,10 +3360,9 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-i386-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-i386-2.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-i386-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(sub, "%03x/", i); @@ -3340,21 +3388,37 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-i386-2.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-i386-2.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-i386-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-i386-2.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-i386-2.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-i386-2.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-i386-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-i386-2.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-i386-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-i386-2.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-i386-2.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-i386-2.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-i386-2.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-i386-2.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-i386-2.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-i386-2.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-i386-2.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-i386-2.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-i386-2.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-i386-2.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-i386-2.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-i386-2.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-i386-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer1/PConv.cpp:38: warning: "PyString_Check" redefined + #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) + +In file included from /usr/include/python2.7/Python.h:97, + from layer0/os_python.h:34, + from layer1/PConv.cpp:17: +/usr/include/python2.7/stringobject.h:58: note: this is the location of the previous definition + #define PyString_Check(op) \ + +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-i386-2.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-i386-2.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-i386-2.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-i386-2.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-i386-2.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'int MovieRelease(Block*, int, int, int, int)': layer1/Movie.cpp:1755:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=] sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)", @@ -3418,8 +3482,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-i386-2.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-i386-2.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:803:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] " MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G); @@ -3433,311 +3497,15 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-i386-2.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-i386-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-i386-2.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-i386-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-i386-2.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-i386-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-i386-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-i386-2.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-i386-2.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-i386-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-i386-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-i386-2.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-i386-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-i386-2.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-i386-2.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-i386-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-i386-2.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-i386-2.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-i386-2.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-i386-2.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-i386-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-i386-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-i386-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-i386-2.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-i386-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-i386-2.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-i386-2.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-i386-2.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer1/PConv.cpp:38: warning: "PyString_Check" redefined - #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) - -In file included from /usr/include/python2.7/Python.h:97, - from layer0/os_python.h:34, - from layer1/PConv.cpp:17: -/usr/include/python2.7/stringobject.h:58: note: this is the location of the previous definition - #define PyString_Check(op) \ - -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-i386-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-i386-2.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': -layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] - "Transform {\n" - ^~~~~~~~~~~~~~~ - " translation %8.6f %8.6f %8.6f\n" - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - " rotation %8.6f %8.6f %8.6f %8.6f\n" - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - " children [\n" - ~~~~~~~~~~~~~~~ - "%s" - ~~~~ - " ]\n" - ~~~~~~ - "}\n", - ~~~~~ -layer1/Ray.cpp:1558:72: - vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); - ~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer1/Ray.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-i386-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-i386-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-i386-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-i386-2.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-i386-2.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': -layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] - " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectSurface.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-i386-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': -layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] - " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectSurface.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] - "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectSurface.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-i386-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-i386-2.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-i386-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-i386-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-i386-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-i386-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': -layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] - " ObjectMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] - " ObjectMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-i386-2.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': -layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-i386-2.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-i386-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-i386-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-i386-2.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-i386-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-i386-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-i386-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': -layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] - " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMesh.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': -layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] - PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-i386-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': -layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] - "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMesh.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] - " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMesh.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-i386-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-i386-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-i386-2.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-i386-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)': layer1/Scene.cpp:4103:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); @@ -3938,8 +3706,95 @@ ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-i386-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-i386-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-i386-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-i386-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-i386-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-i386-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-i386-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-i386-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': +layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] + "Transform {\n" + ^~~~~~~~~~~~~~~ + " translation %8.6f %8.6f %8.6f\n" + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + " rotation %8.6f %8.6f %8.6f %8.6f\n" + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + " children [\n" + ~~~~~~~~~~~~~~~ + "%s" + ~~~~ + " ]\n" + ~~~~~~ + "}\n", + ~~~~~ +layer1/Ray.cpp:1558:72: + vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); + ~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer1/Ray.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-i386-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-i386-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-i386-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-i386-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-i386-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-i386-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-i386-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': +layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] + " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectSurface.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-i386-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-i386-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-i386-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': +layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] + " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectSurface.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] + "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectSurface.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-i386-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)': layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat @@ -3965,6 +3820,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-i386-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-i386-2.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:8024:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) @@ -3978,16 +3835,190 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-i386-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-i386-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-i386-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-i386-2.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-i386-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-i386-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': +layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] + " ObjectMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] + " ObjectMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-i386-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-i386-2.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-i386-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': +layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-i386-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-i386-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-i386-2.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-i386-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-i386-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-i386-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-i386-2.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-i386-2.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-i386-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-i386-2.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-i386-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-i386-2.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-i386-2.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-i386-2.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-i386-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': +layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] + " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMolecule.cpp:16: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-i386-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-i386-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)': +layer2/ObjectMolecule.cpp:11416:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] + sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + buffer, v[0], v[1], v[2], state + 1, mode, 0); + ~~~~~~ +layer2/ObjectMolecule.cpp:11416:21: note: directive argument in the range [-2147483647, 2147483647] +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMolecule.cpp:16: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-i386-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-i386-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)': layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)", @@ -4005,6 +4036,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-i386-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)': layer3/Editor.cpp:1027:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))", @@ -4020,7 +4052,9 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-i386-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-i386-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-i386-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-i386-2.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)': layer3/Editor.cpp:1903:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Editor: grabbing (%s).", name ENDFB(G); @@ -4034,7 +4068,19 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-i386-2.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': +layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] + " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMesh.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] sprintf(buffer, "(byres %s)", name); @@ -4072,83 +4118,38 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-i386-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-i386-2.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-i386-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': -layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] - " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-i386-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-i386-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': +layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] + "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, - from layer2/ObjectMolecule.cpp:16: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 + from layer2/ObjectMesh.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-i386-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-i386-2.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)': -layer2/ObjectMolecule.cpp:11416:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] - sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - buffer, v[0], v[1], v[2], state + 1, mode, 0); - ~~~~~~ -layer2/ObjectMolecule.cpp:11416:21: note: directive argument in the range [-2147483647, 2147483647] -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectMolecule.cpp:16: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-i386-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-i386-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-i386-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-i386-2.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-i386-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-i386-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-i386-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-i386-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-i386-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-i386-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-i386-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-i386-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-i386-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': -layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=] - "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer5/PyMOL.cpp:2856:70: - ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); - ~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer5/PyMOL.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': -layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] - " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] + " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, - from layer3/PlugIOManager.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 + from layer2/ObjectMesh.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': +layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] + PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-i386-2.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9655:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] " Remove: eliminated %d atoms in model \"%s\".\n", @@ -4162,7 +4163,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-i386-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)': layer3/Executive.cpp:10004:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, @@ -4200,7 +4200,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-i386-2.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-i386-2.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12098:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", @@ -4277,7 +4277,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)': layer3/Executive.cpp:12597:9: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(G, index) @@ -4389,6 +4388,11 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': +layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + char *myArgv[8] = {"pymol"}; + ^ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-i386-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12759:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", @@ -4554,37 +4558,11 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': -layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] - sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - buf1); - ~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer3/Seeker.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': -layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] - sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - buf1); - ~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer3/Seeker.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-i386-2.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-i386-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-i386-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-i386-2.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-i386-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveDrag(Block*, int, int, int)': layer3/Executive.cpp:16050:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", @@ -4600,25 +4578,37 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': -layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - char *myArgv[8] = {"pymol"}; - ^ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-i386-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': -layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] - " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-i386-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': +layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=] + "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer5/PyMOL.cpp:2856:70: + ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); + ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, - from layer2/ObjectMolecule2.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 + from layer5/PyMOL.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': +layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] + " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer3/Selector.cpp:19: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-i386-2.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15045:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: object \"%s\" created.\n", obj->Name ENDFB(G); @@ -4682,7 +4672,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5217:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] " Executive: skipping unrecognized object \"%s\" of type %d.\n", @@ -4737,7 +4726,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-i386-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10398:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Executive: object %s created.\n", oDst->Obj.Name ENDFB(G); @@ -4751,6 +4739,19 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': +layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] + " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer3/PlugIOManager.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14715:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] "new_name before: %s\n", new_name ENDFB(G); @@ -4781,6 +4782,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-i386-2.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-i386-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:4238:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); @@ -4872,7 +4875,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-i386-2.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, int, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)': layer3/Executive.cpp:3989:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); @@ -4886,47 +4888,36 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-i386-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': -layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] - "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python2.7/Python.h:33, - from layer0/os_python.h:34, - from layer2/ObjectSlice.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] - " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': +layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] + sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + buf1); + ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, - from layer2/ObjectSlice.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': -layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] - " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from layer3/Seeker.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': +layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] + sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + buf1); + ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, - from layer3/Selector.cpp:19: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-i386-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon + from layer3/Seeker.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)': layer3/Selector.cpp:9195:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] " Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G); @@ -4964,6 +4955,21 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': +layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] + " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectMolecule2.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-i386-2.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); @@ -4990,7 +4996,35 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-i386-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-i386-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-i386-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-i386-2.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': +layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] + "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectSlice.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] + " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python2.7/Python.h:33, + from layer0/os_python.h:34, + from layer2/ObjectSlice.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)': layer4/Cmd.cpp:7297:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); @@ -5022,183 +5056,144 @@ building 'chempy.champ._champ' extension creating build/temp.linux-i386-2.7/contrib/champ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-i386-2.7/contrib/champ/champ.o -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-i386-2.7/contrib/champ/champ_module.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-i386-2.7/contrib/champ/chiral.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-i386-2.7/contrib/champ/err2.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-i386-2.7/contrib/champ/champ_module.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-i386-2.7/contrib/champ/feedback2.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-i386-2.7/contrib/champ/list.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-i386-2.7/contrib/champ/os_memory.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-i386-2.7/contrib/champ/sort.o -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-i386-2.7/contrib/champ/strblock.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-i386-2.7/contrib/champ/vla.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-i386-2.7/contrib/champ/strblock.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/contrib/champ/champ.o build/temp.linux-i386-2.7/contrib/champ/champ_module.o build/temp.linux-i386-2.7/contrib/champ/chiral.o build/temp.linux-i386-2.7/contrib/champ/err2.o build/temp.linux-i386-2.7/contrib/champ/feedback2.o build/temp.linux-i386-2.7/contrib/champ/list.o build/temp.linux-i386-2.7/contrib/champ/os_memory.o build/temp.linux-i386-2.7/contrib/champ/sort.o build/temp.linux-i386-2.7/contrib/champ/strblock.o build/temp.linux-i386-2.7/contrib/champ/vla.o -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so I: pybuild base:217: /usr/bin/python3 setup.py build --pyqt PyQt5 running build running build_py creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker -copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast -copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments -copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments +copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy +copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin -copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin -copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin +copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin +copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin -copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin +copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker +copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast +copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ -copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins -copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo -copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal -copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal -copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal -copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup -copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup -copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup -copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup +copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments +copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol +copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry -copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry +copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl -copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl -copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu -copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut -copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol @@ -5207,71 +5202,110 @@ copying modules/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry +copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard -copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl +copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl +copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut +copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu +copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 +copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 +copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt -copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax -copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax -copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 -copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 -copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 -copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax +copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins +copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo +copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal +copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal +copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal +copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal +creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup +copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup +copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup +copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup +copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms -copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms +copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-i386-3.7 @@ -5293,17 +5327,98 @@ creating build/temp.linux-i386-3.7/modules/cealign/src creating build/temp.linux-i386-3.7/ov creating build/temp.linux-i386-3.7/ov/src -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c build/generated/ShaderText.cpp -o build/temp.linux-i386-3.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if (NULL == fgets(fbuffer, 1024, data->file)) + ^~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + if (NULL == fgets(fbuffer, 1024, data->file)) + ^~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); @@ -5318,6 +5433,21 @@ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(ok) { ^~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(fbuffer, 1024, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': +contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(fbuffer, 1024, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': +contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); + ^~ +contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + return ok; + ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] int i, numatoms; @@ -5326,51 +5456,197 @@ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); - ^~ -contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - return ok; - ^~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&headersize, sizeof(int), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] + char word[3][BUFSIZ]; + ^~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] + molfile_qm_hessian_t *hessian_data; + ^~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] + char word[7][BUFSIZ]; + ^~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, " Ene= %f\n", &orbenergy); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, " Spin= %s\n", spin); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, " Occup= %f\n", &occu); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1024, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Charges[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Masses[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Rk[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Req[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Tk[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Teq[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Pk[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Pn[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Phase[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Solty[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Cn1[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->Cn2[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->HB12[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &prm->HB6[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT, &H[i]); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Box[0], &prm->Box[1], &prm->Box[2]); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Natcap, &prm->Cutcap, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Xcap, &prm->Ycap, &prm->Zcap); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': +contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, "%d", &natm); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': +contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] + char word[6][BUFSIZ]; + ^~~~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] + sprintf(atom->resname, "%d", resid); + ^~ +contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] + sprintf(atom->resname, "%d", resid); + ^~~~ +In file included from /usr/include/stdio.h:873, + from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': +contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1024, fd); + ^~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(datablock, total * sizeof(float), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: +contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fread(): rc %ld sz: %ld\n", rc, size); + ~~^ ~~ + %lld +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fread(): rc %ld sz: %ld\n", rc, size); + ~~^ ~~~~ + %lld +contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", + ~~^ + %lld + rc, size, szleft, writecalls); + ~~ +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", + ~~^ + %lld + rc, size, szleft, writecalls); + ~~~~ +contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] + printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", + ~~^ + %lld + rc, size, szleft, writecalls); + ~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (&len, sizeof(int), 1, fp); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (str, len, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 1, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 1, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 2, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 2, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 4, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 4, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 4, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread (ptr, 8, 1, fp); + ~~~~~~^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] - fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] - fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] - fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] - fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] - fread(skip, 1, 8, fp); - ^~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': -contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, "%*s %f %f %f", &x, &y, &z); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line @@ -5393,6 +5669,28 @@ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(symData, 81, fd); + ~~~~~^~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] + fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] + fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] + fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] + fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] + fread(skip, 1, 8, fp); + ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); @@ -5406,6 +5704,10 @@ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': +contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] + fscanf(data->file, "%*s %f %f %f", &x, &y, &z); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); @@ -5423,43 +5725,16 @@ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); @@ -5468,90 +5743,41 @@ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] - double timesteprst; - ^~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(title, 82, fd); - ^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 82, fd); - ^~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 80, infile); + ~~~~~^~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(brick, sizeof(char), 512, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(fileHeader, sizeof(short), 19, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': -contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(buf, 85, file); - ~~~~~^~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(buf, 85, file); - ~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(buf, 85, file); - ~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(buf, 85, file); - ~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " %d", &cur); - ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(sdum, 512, file); - ~~~~~^~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, "%s\n", sdum); // "%FLAG" - ~~~~~~^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" - ~~~~~~^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" - ~~~~~~^~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(prm->title, sizeof(prm->title), file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(sdum, sizeof(sdum), file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file,parm7, - ~~~~~~^~~~~~~~~~~~ - &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Jparm, &prm->Nparm); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, parm7, - ~~~~~~^~~~~~~~~~~~~ - &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Natyp, &prm->Nphb); - ~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->IfBox, &prm->Nmxrs, &prm->IfCap); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file,"%8d",&prm->Numextra); //BB - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); @@ -5579,17 +5805,10 @@ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, "%s\n", buf); - ~~~~~~^~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, "%s\n", buf); - ~~~~~~^~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, "%s\n", buf); - ~~~~~~^~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); @@ -5627,40 +5846,6 @@ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] @@ -5690,182 +5875,136 @@ %lld rc, size, szleft, writecalls); ~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': +contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(buf, 85, file); + ~~~~~^~~~~~~~~~~~~~~ +In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(buf, 85, file); + ~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(buf, 85, file); + ~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(buf, 85, file); + ~~~~~^~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, " %d", &cur); + ~~~~~~^~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(sdum, 512, file); + ~~~~~^~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, "%s\n", sdum); // "%FLAG" + ~~~~~~^~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" + ~~~~~~^~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" + ~~~~~~^~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(prm->title, sizeof(prm->title), file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(sdum, sizeof(sdum), file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file,parm7, + ~~~~~~^~~~~~~~~~~~ + &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Jparm, &prm->Nparm); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, parm7, + ~~~~~~^~~~~~~~~~~~~ + &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Natyp, &prm->Nphb); + ~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &prm->IfBox, &prm->Nmxrs, &prm->IfCap); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file,"%8d",&prm->Numextra); //BB + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, "%s\n", buf); + ~~~~~~^~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, "%s\n", buf); + ~~~~~~^~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(file, "%s\n", buf); + ~~~~~~^~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] + double timesteprst; + ^~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(title, 82, fd); + ^~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, 82, fd); + ^~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&dataBegin, sizeof(int), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] - sprintf(atom->resname, "%d", resid); - ^~ -contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] - sprintf(atom->resname, "%d", resid); - ^~~~ -In file included from /usr/include/stdio.h:873, - from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] - molfile_qm_hessian_t *hessian_data; - ^~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, " Ene= %f\n", &orbenergy); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, " Spin= %s\n", spin); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, " Occup= %f\n", &occu); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1024, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': -contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] - fscanf(data->file, "%d", &natm); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Charges[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Masses[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Rk[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Req[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Tk[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Teq[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Pk[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Pn[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Phase[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Solty[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Cn1[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->Cn2[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->HB12[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &prm->HB6[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT, &H[i]); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Box[0], &prm->Box[1], &prm->Box[2]); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Natcap, &prm->Cutcap, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &prm->Xcap, &prm->Ycap, &prm->Zcap); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(nextline, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, bgf->file); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(line, LINESIZE, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); @@ -5881,131 +6020,10 @@ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(symData, 81, fd); - ~~~~~^~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] - char word[3][BUFSIZ]; - ^~~~ -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] - char word[7][BUFSIZ]; - ^~~~ -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': -contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] - char word[6][BUFSIZ]; - ^~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': -contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1024, fd); - ^~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(datablock, total * sizeof(float), 1, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(intHeader, sizeof(int), 5, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(floatHeader, sizeof(float), 6, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, 80, infile); - ~~~~~^~~~~~~~~~~~~~~~~~ -In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (&len, sizeof(int), 1, fp); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (str, len, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 1, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 1, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 2, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 2, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 4, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 4, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 4, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread (ptr, 8, 1, fp); - ~~~~~~^~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&headersize, sizeof(int), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] @@ -6034,61 +6052,7 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] - strncpy(tmptype, atom->type, sizeof(atom->type)); - ^ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if (NULL == fgets(fbuffer, 1024, data->file)) - ^~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - if (NULL == fgets(fbuffer, 1024, data->file)) - ^~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(fbuffer, 1024, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': -contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(fbuffer, 1024, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); @@ -6122,41 +6086,110 @@ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&dataBegin, sizeof(int), 1, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(intHeader, sizeof(int), 5, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(floatHeader, sizeof(float), 6, fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Debug.cpp -o build/temp.linux-i386-3.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': +contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Feedback.cpp -o build/temp.linux-i386-3.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Deferred.cpp -o build/temp.linux-i386-3.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': +contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GenericBuffer.cpp -o build/temp.linux-i386-3.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Map.cpp -o build/temp.linux-i386-3.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: -contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fread(): rc %ld sz: %ld\n", rc, size); - ~~^ ~~ - %lld -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fread(): rc %ld sz: %ld\n", rc, size); - ~~^ ~~~~ - %lld -contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", - ~~^ - %lld - rc, size, szleft, writecalls); - ~~ -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", - ~~^ - %lld - rc, size, szleft, writecalls); - ~~~~ -contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] - printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", - ~~^ - %lld - rc, size, szleft, writecalls); - ~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Block.cpp -o build/temp.linux-i386-3.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); @@ -6188,96 +6221,45 @@ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Feedback.cpp -o build/temp.linux-i386-3.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Block.cpp -o build/temp.linux-i386-3.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': -contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Err.cpp -o build/temp.linux-i386-3.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryCache.cpp -o build/temp.linux-i386-3.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': -contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] - fgets(lineptr, LINESIZE, data->file); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(brick, sizeof(char), 512, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(fileHeader, sizeof(short), 19, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(nextline, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, bgf->file); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(line, LINESIZE, fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Map.cpp -o build/temp.linux-i386-3.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': -contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] - sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", - ^~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Field.cpp -o build/temp.linux-i386-3.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Parse.cpp -o build/temp.linux-i386-3.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tetsurf.cpp -o build/temp.linux-i386-3.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': -contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] - char *name, *type; - ^~~~ -contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] - char *name, *type; - ^~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Pixmap.cpp -o build/temp.linux-i386-3.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': -contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryDebug.cpp -o build/temp.linux-i386-3.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); @@ -6309,13 +6291,109 @@ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Crystal.cpp -o build/temp.linux-i386-3.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Queue.cpp -o build/temp.linux-i386-3.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/File.cpp -o build/temp.linux-i386-3.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] + strncpy(tmptype, atom->type, sizeof(atom->type)); + ^ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] + fgets(lineptr, LINESIZE, data->file); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': +contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] + sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", + ^~ +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Field.cpp -o build/temp.linux-i386-3.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': +contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] + char *name, *type; + ^~~~ +contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] + char *name, *type; + ^~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Parse.cpp -o build/temp.linux-i386-3.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderMgr.cpp -o build/temp.linux-i386-3.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Match.cpp -o build/temp.linux-i386-3.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tetsurf.cpp -o build/temp.linux-i386-3.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Triangle.cpp -o build/temp.linux-i386-3.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MyPNG.cpp -o build/temp.linux-i386-3.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Vector.cpp -o build/temp.linux-i386-3.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Basis.cpp -o build/temp.linux-i386-3.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ButMode.cpp -o build/temp.linux-i386-3.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Pixmap.cpp -o build/temp.linux-i386-3.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/COLLADA.cpp -o build/temp.linux-i386-3.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Control.cpp -o build/temp.linux-i386-3.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 1024, fd); // go on to next line + ~~~~~^~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fgets(readbuf, 256, xsf->fd); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Queue.cpp -o build/temp.linux-i386-3.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Crystal.cpp -o build/temp.linux-i386-3.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GraphicsUtil.cpp -o build/temp.linux-i386-3.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); @@ -6486,39 +6564,11 @@ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GenericBuffer.cpp -o build/temp.linux-i386-3.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Vector.cpp -o build/temp.linux-i386-3.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 1024, fd); // go on to next line - ~~~~~^~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fgets(readbuf, 256, xsf->fd); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontType.cpp -o build/temp.linux-i386-3.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Match.cpp -o build/temp.linux-i386-3.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/P.cpp -o build/temp.linux-i386-3.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/File.cpp -o build/temp.linux-i386-3.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(answer, "%03x/", d1); @@ -6543,8 +6593,11 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Matrix.cpp -o build/temp.linux-i386-3.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/COLLADA.cpp -o build/temp.linux-i386-3.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PyMOLObject.cpp -o build/temp.linux-i386-3.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Word.cpp -o build/temp.linux-i386-3.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Isosurf.cpp -o build/temp.linux-i386-3.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(sub, "%03x/", i); @@ -6570,30 +6623,24 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Debug.cpp -o build/temp.linux-i386-3.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Deferred.cpp -o build/temp.linux-i386-3.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Err.cpp -o build/temp.linux-i386-3.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Texture.cpp -o build/temp.linux-i386-3.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontType.cpp -o build/temp.linux-i386-3.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GraphicsUtil.cpp -o build/temp.linux-i386-3.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Word.cpp -o build/temp.linux-i386-3.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Isosurf.cpp -o build/temp.linux-i386-3.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Matrix.cpp -o build/temp.linux-i386-3.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Scene.cpp -o build/temp.linux-i386-3.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRender.cpp -o build/temp.linux-i386-3.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/CGO.cpp -o build/temp.linux-i386-3.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/os_gl.cpp -o build/temp.linux-i386-3.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Setting.cpp -o build/temp.linux-i386-3.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Extrude.cpp -o build/temp.linux-i386-3.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Movie.cpp -o build/temp.linux-i386-3.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tracker.cpp -o build/temp.linux-i386-3.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Character.cpp -o build/temp.linux-i386-3.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Triangle.cpp -o build/temp.linux-i386-3.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Basis.cpp -o build/temp.linux-i386-3.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ButMode.cpp -o build/temp.linux-i386-3.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryCache.cpp -o build/temp.linux-i386-3.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryDebug.cpp -o build/temp.linux-i386-3.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MyPNG.cpp -o build/temp.linux-i386-3.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Texture.cpp -o build/temp.linux-i386-3.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/os_gl.cpp -o build/temp.linux-i386-3.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Text.cpp -o build/temp.linux-i386-3.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Wizard.cpp -o build/temp.linux-i386-3.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ray.cpp -o build/temp.linux-i386-3.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util.cpp -o build/temp.linux-i386-3.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PConv.cpp -o build/temp.linux-i386-3.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScrollBar.cpp -o build/temp.linux-i386-3.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'int MovieRelease(Block*, int, int, int, int)': layer1/Movie.cpp:1755:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=] sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)", @@ -6657,8 +6704,9 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PyMOLObject.cpp -o build/temp.linux-i386-3.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRender.cpp -o build/temp.linux-i386-3.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Color.cpp -o build/temp.linux-i386-3.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tracker.cpp -o build/temp.linux-i386-3.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util2.cpp -o build/temp.linux-i386-3.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:803:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] " MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G); @@ -6672,298 +6720,15 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Text.cpp -o build/temp.linux-i386-3.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Color.cpp -o build/temp.linux-i386-3.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-3.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ortho.cpp -o build/temp.linux-i386-3.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/CGO.cpp -o build/temp.linux-i386-3.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ray.cpp -o build/temp.linux-i386-3.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Font.cpp -o build/temp.linux-i386-3.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-3.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/GadgetSet.cpp -o build/temp.linux-i386-3.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScrollBar.cpp -o build/temp.linux-i386-3.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util.cpp -o build/temp.linux-i386-3.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/P.cpp -o build/temp.linux-i386-3.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util2.cpp -o build/temp.linux-i386-3.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderPrg.cpp -o build/temp.linux-i386-3.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Seq.cpp -o build/temp.linux-i386-3.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/HydrogenAdder.cpp -o build/temp.linux-i386-3.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectAlignment.cpp -o build/temp.linux-i386-3.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/BondTypeHistory.cpp -o build/temp.linux-i386-3.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Control.cpp -o build/temp.linux-i386-3.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmodTyping.cpp -o build/temp.linux-i386-3.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifFile.cpp -o build/temp.linux-i386-3.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Sphere.cpp -o build/temp.linux-i386-3.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Setting.cpp -o build/temp.linux-i386-3.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-3.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': -layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] - "Transform {\n" - ^~~~~~~~~~~~~~~ - " translation %8.6f %8.6f %8.6f\n" - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - " rotation %8.6f %8.6f %8.6f %8.6f\n" - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - " children [\n" - ~~~~~~~~~~~~~~~ - "%s" - ~~~~ - " ]\n" - ~~~~~~ - "}\n", - ~~~~~ -layer1/Ray.cpp:1558:72: - vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); - ~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer1/Ray.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-3.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PConv.cpp -o build/temp.linux-i386-3.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGroup.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Mol2Typing.cpp -o build/temp.linux-i386-3.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Extrude.cpp -o build/temp.linux-i386-3.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCGO.cpp -o build/temp.linux-i386-3.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMap.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MolV3000.cpp -o build/temp.linux-i386-3.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Pop.cpp -o build/temp.linux-i386-3.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSurface.cpp -o build/temp.linux-i386-3.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCallback.cpp -o build/temp.linux-i386-3.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistDash.cpp -o build/temp.linux-i386-3.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Font.cpp -o build/temp.linux-i386-3.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbonded.cpp -o build/temp.linux-i386-3.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectDist.cpp -o build/temp.linux-i386-3.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': -layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] - " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectSurface.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': -layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] - " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectSurface.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] - "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectSurface.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistLabel.cpp -o build/temp.linux-i386-3.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectVolume.cpp -o build/temp.linux-i386-3.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-3.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': -layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] - " ObjectMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] - " ObjectMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadget.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Rep.cpp -o build/temp.linux-i386-3.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': -layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] - " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~ ~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMap.cpp:21: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepRibbon.cpp -o build/temp.linux-i386-3.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDot.cpp -o build/temp.linux-i386-3.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': -layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] - "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectVolume.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Scene.cpp -o build/temp.linux-i386-3.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMesh.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/TypeFace.cpp -o build/temp.linux-i386-3.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepAngle.cpp -o build/temp.linux-i386-3.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/View.cpp -o build/temp.linux-i386-3.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepEllipsoid.cpp -o build/temp.linux-i386-3.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': -layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] - " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMesh.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': -layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] - "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMesh.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] - " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMesh.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphere.cpp -o build/temp.linux-i386-3.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CoordSet.cpp -o build/temp.linux-i386-3.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepLabel.cpp -o build/temp.linux-i386-3.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCartoon.cpp -o build/temp.linux-i386-3.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSurface.cpp -o build/temp.linux-i386-3.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Wizard.cpp -o build/temp.linux-i386-3.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': -layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] - PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectAlignment.cpp -o build/temp.linux-i386-3.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-3.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)': layer1/Scene.cpp:4103:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); @@ -7164,9 +6929,93 @@ ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-3.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/DistSet.cpp -o build/temp.linux-i386-3.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-3.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Pop.cpp -o build/temp.linux-i386-3.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectDist.cpp -o build/temp.linux-i386-3.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGroup.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Mol2Typing.cpp -o build/temp.linux-i386-3.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/HydrogenAdder.cpp -o build/temp.linux-i386-3.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfo.cpp -o build/temp.linux-i386-3.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScenePicking.cpp -o build/temp.linux-i386-3.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMap.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSurface.cpp -o build/temp.linux-i386-3.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MolV3000.cpp -o build/temp.linux-i386-3.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderPrg.cpp -o build/temp.linux-i386-3.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCartoon.cpp -o build/temp.linux-i386-3.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCGO.cpp -o build/temp.linux-i386-3.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmodTyping.cpp -o build/temp.linux-i386-3.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadget.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': +layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] + "Transform {\n" + ^~~~~~~~~~~~~~~ + " translation %8.6f %8.6f %8.6f\n" + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + " rotation %8.6f %8.6f %8.6f %8.6f\n" + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + " children [\n" + ~~~~~~~~~~~~~~~ + "%s" + ~~~~ + " ]\n" + ~~~~~~ + "}\n", + ~~~~~ +layer1/Ray.cpp:1558:72: + vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); + ~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer1/Ray.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistDash.cpp -o build/temp.linux-i386-3.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepEllipsoid.cpp -o build/temp.linux-i386-3.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': +layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] + " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectSurface.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRay.cpp -o build/temp.linux-i386-3.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/BondTypeHistory.cpp -o build/temp.linux-i386-3.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': +layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] + " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectSurface.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] + "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectSurface.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbonded.cpp -o build/temp.linux-i386-3.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)': layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat @@ -7192,6 +7041,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectVolume.cpp -o build/temp.linux-i386-3.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:8024:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) @@ -7205,18 +7055,157 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepMesh.cpp -o build/temp.linux-i386-3.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-3.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScenePicking.cpp -o build/temp.linux-i386-3.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfo.cpp -o build/temp.linux-i386-3.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphere.cpp -o build/temp.linux-i386-3.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Sphere.cpp -o build/temp.linux-i386-3.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCallback.cpp -o build/temp.linux-i386-3.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifFile.cpp -o build/temp.linux-i386-3.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepLabel.cpp -o build/temp.linux-i386-3.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistLabel.cpp -o build/temp.linux-i386-3.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSurface.cpp -o build/temp.linux-i386-3.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SculptCache.cpp -o build/temp.linux-i386-3.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-3.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/AtomIterators.cpp -o build/temp.linux-i386-3.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': +layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] + "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectVolume.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-3.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': +layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] + " ObjectMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] + " ObjectMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Executive.cpp -o build/temp.linux-i386-3.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SideChainHelper.cpp -o build/temp.linux-i386-3.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MovieScene.cpp -o build/temp.linux-i386-3.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRay.cpp -o build/temp.linux-i386-3.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Menu.cpp -o build/temp.linux-i386-3.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepAngle.cpp -o build/temp.linux-i386-3.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': +layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] + " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~ ~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMap.cpp:21: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDot.cpp -o build/temp.linux-i386-3.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepRibbon.cpp -o build/temp.linux-i386-3.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-3.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCylBond.cpp -o build/temp.linux-i386-3.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepMesh.cpp -o build/temp.linux-i386-3.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/VFont.cpp -o build/temp.linux-i386-3.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Editor.cpp -o build/temp.linux-i386-3.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/PopUp.cpp -o build/temp.linux-i386-3.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-3.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMesh.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CoordSet.cpp -o build/temp.linux-i386-3.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", @@ -7246,6 +7235,12 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Selector.cpp -o build/temp.linux-i386-3.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Rep.cpp -o build/temp.linux-i386-3.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCylBond.cpp -o build/temp.linux-i386-3.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Menu.cpp -o build/temp.linux-i386-3.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/TestPyMOL.cpp -o build/temp.linux-i386-3.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVContext.cpp -o build/temp.linux-i386-3.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)': layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)", @@ -7263,6 +7258,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeap.cpp -o build/temp.linux-i386-3.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)': layer3/Editor.cpp:1027:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))", @@ -7291,9 +7287,21 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVContext.cpp -o build/temp.linux-i386-3.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVRandom.cpp -o build/temp.linux-i386-3.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeap.cpp -o build/temp.linux-i386-3.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeapArray.cpp -o build/temp.linux-i386-3.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVLexicon.cpp -o build/temp.linux-i386-3.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': +layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] + " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectMesh.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] sprintf(buffer, "(byres %s)", name); @@ -7331,50 +7339,41 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeapArray.cpp -o build/temp.linux-i386-3.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/ov_utility.cpp -o build/temp.linux-i386-3.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVLexicon.cpp -o build/temp.linux-i386-3.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Shaker.cpp -o build/temp.linux-i386-3.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepWireBond.cpp -o build/temp.linux-i386-3.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToAny.cpp -o build/temp.linux-i386-3.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/PyMOL.cpp -o build/temp.linux-i386-3.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Executive.cpp -o build/temp.linux-i386-3.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToOne.cpp -o build/temp.linux-i386-3.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDihedral.cpp -o build/temp.linux-i386-3.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Symmetry.cpp -o build/temp.linux-i386-3.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Sculpt.cpp -o build/temp.linux-i386-3.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/PlugIOManager.cpp -o build/temp.linux-i386-3.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': -layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=] - "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer5/PyMOL.cpp:2856:70: - ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); - ~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVRandom.cpp -o build/temp.linux-i386-3.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/PopUp.cpp -o build/temp.linux-i386-3.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': +layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] + PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': +layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] + "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, - from layer5/PyMOL.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/TestPyMOL.cpp -o build/temp.linux-i386-3.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': -layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] - " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from layer2/ObjectMesh.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] + " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, - from layer3/PlugIOManager.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 + from layer2/ObjectMesh.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/ov_utility.cpp -o build/temp.linux-i386-3.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToAny.cpp -o build/temp.linux-i386-3.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToOne.cpp -o build/temp.linux-i386-3.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/main.cpp -o build/temp.linux-i386-3.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9655:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] " Remove: eliminated %d atoms in model \"%s\".\n", @@ -7457,6 +7456,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/DistSet.cpp -o build/temp.linux-i386-3.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12283:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", @@ -7777,9 +7777,13 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Seeker.cpp -o build/temp.linux-i386-3.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/main.cpp -o build/temp.linux-i386-3.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SculptCache.cpp -o build/temp.linux-i386-3.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/PyMOL.cpp -o build/temp.linux-i386-3.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': +layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + char *myArgv[8] = {"pymol"}; + ^ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/PlugIOManager.cpp -o build/temp.linux-i386-3.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDihedral.cpp -o build/temp.linux-i386-3.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveDrag(Block*, int, int, int)': layer3/Executive.cpp:16050:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", @@ -7795,54 +7799,10 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': -layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - char *myArgv[8] = {"pymol"}; - ^ -layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': -layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] - sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - buf1); - ~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer3/Seeker.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': -layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] - sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - buf1); - ~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer3/Seeker.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SideChainHelper.cpp -o build/temp.linux-i386-3.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': -layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] - " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/python3.7m/Python.h:25, - from layer0/os_python.h:34, - from layer2/ObjectMolecule2.cpp:20: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/TypeFace.cpp -o build/temp.linux-i386-3.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepWireBond.cpp -o build/temp.linux-i386-3.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/View.cpp -o build/temp.linux-i386-3.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-3.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15045:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: object \"%s\" created.\n", obj->Name ENDFB(G); @@ -7880,7 +7840,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-3.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)': layer3/Executive.cpp:2302:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name @@ -7907,6 +7866,19 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': +layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] + " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer3/PlugIOManager.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5217:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] " Executive: skipping unrecognized object \"%s\" of type %d.\n", @@ -7961,7 +7933,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/VFont.cpp -o build/temp.linux-i386-3.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10398:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Executive: object %s created.\n", oDst->Obj.Name ENDFB(G); @@ -7975,7 +7946,24 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Selector.cpp -o build/temp.linux-i386-3.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Seeker.cpp -o build/temp.linux-i386-3.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': +layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=] + "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer5/PyMOL.cpp:2856:70: + ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); + ~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer5/PyMOL.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14715:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] "new_name before: %s\n", new_name ENDFB(G); @@ -8006,6 +7994,7 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Sculpt.cpp -o build/temp.linux-i386-3.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:4238:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); @@ -8097,6 +8086,19 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': +layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] + " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer3/Selector.cpp:19: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, int, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)': layer3/Executive.cpp:3989:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); @@ -8110,47 +8112,50 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSlice.cpp -o build/temp.linux-i386-3.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': -layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] - "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': +layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] + sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + buf1); + ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, - from layer2/ObjectSlice.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] - " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from layer3/Seeker.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': +layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] + sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + buf1); + ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, - from layer2/ObjectSlice.cpp:17: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from layer3/Seeker.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-3.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon -layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': -layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] - " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': +layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] + " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, - from layer3/Selector.cpp:19: -/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 + from layer2/ObjectMolecule2.cpp:20: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MoleculeExporter.cpp -o build/temp.linux-i386-3.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)': layer3/Selector.cpp:9195:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] " Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G); @@ -8188,6 +8193,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Shaker.cpp -o build/temp.linux-i386-3.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MoleculeExporter.cpp -o build/temp.linux-i386-3.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); @@ -8214,6 +8221,33 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Symmetry.cpp -o build/temp.linux-i386-3.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSlice.cpp -o build/temp.linux-i386-3.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon +layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': +layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] + "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectSlice.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] + " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/python3.7m/Python.h:25, + from layer0/os_python.h:34, + from layer2/ObjectSlice.cpp:17: +/usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Cmd.cpp -o build/temp.linux-i386-3.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)': layer4/Cmd.cpp:7297:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] @@ -8248,20 +8282,13 @@ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/champ.c -o build/temp.linux-i386-3.7/contrib/champ/champ.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/champ_module.c -o build/temp.linux-i386-3.7/contrib/champ/champ_module.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/chiral.c -o build/temp.linux-i386-3.7/contrib/champ/chiral.o -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/err2.c -o build/temp.linux-i386-3.7/contrib/champ/err2.o -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/feedback2.c -o build/temp.linux-i386-3.7/contrib/champ/feedback2.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/list.c -o build/temp.linux-i386-3.7/contrib/champ/list.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/feedback2.c -o build/temp.linux-i386-3.7/contrib/champ/feedback2.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/err2.c -o build/temp.linux-i386-3.7/contrib/champ/err2.o +i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/strblock.c -o build/temp.linux-i386-3.7/contrib/champ/strblock.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/os_memory.c -o build/temp.linux-i386-3.7/contrib/champ/os_memory.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/sort.c -o build/temp.linux-i386-3.7/contrib/champ/sort.o -i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/strblock.c -o build/temp.linux-i386-3.7/contrib/champ/strblock.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/vla.c -o build/temp.linux-i386-3.7/contrib/champ/vla.o -contrib/champ/champ.c: In function 'PConvPyObjectToStrMaxClean': -contrib/champ/champ.c:1250:8: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - st = PyString_AsString(object); - ^ -contrib/champ/champ.c:1255:10: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] - st = PyString_AsString(tmp); - ^ In file included from contrib/champ/champ_module.c:16: contrib/champ/champ_module.c: In function 'list_prepend_pattern_strings': contrib/champ/os_python.h:34:41: warning: passing argument 2 of 'ChampSmiToPat' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] @@ -8273,6 +8300,13 @@ contrib/champ/champ.h:285:35: note: expected 'char *' but argument is of type 'const char *' int ChampSmiToPat(CChamp *I,char *c); ~~~~~~^ +contrib/champ/champ.c: In function 'PConvPyObjectToStrMaxClean': +contrib/champ/champ.c:1250:8: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + st = PyString_AsString(object); + ^ +contrib/champ/champ.c:1255:10: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] + st = PyString_AsString(tmp); + ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/contrib/champ/champ.o build/temp.linux-i386-3.7/contrib/champ/champ_module.o build/temp.linux-i386-3.7/contrib/champ/chiral.o build/temp.linux-i386-3.7/contrib/champ/err2.o build/temp.linux-i386-3.7/contrib/champ/feedback2.o build/temp.linux-i386-3.7/contrib/champ/list.o build/temp.linux-i386-3.7/contrib/champ/os_memory.o build/temp.linux-i386-3.7/contrib/champ/sort.o build/temp.linux-i386-3.7/contrib/champ/strblock.o build/temp.linux-i386-3.7/contrib/champ/vla.o -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/pymol-2.2.0+dfsg' @@ -8289,8 +8323,8 @@ run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... - run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0020pdb.pdb is missing. + run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... @@ -8300,8 +8334,8 @@ run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... - run_tests: C0030pkl.pdb is missing. run_tests: C0030pkl.log DIFFERS over about 4 lines. + run_tests: C0030pkl.pdb is missing. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... @@ -8310,8 +8344,8 @@ run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.log DIFFERS over about 61 lines. - run_tests: C0080create.2.pdb is missing. run_tests: C0080create.1.pdb is missing. + run_tests: C0080create.2.pdb is missing. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... @@ -8346,22 +8380,22 @@ run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... + run_tests: C0700odd.A.pdb is missing. + run_tests: C0700odd.6.pdb is missing. + run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.9.pdb is missing. - run_tests: C0700odd.E.pdb is missing. + run_tests: C0700odd.4.pdb is missing. + run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.1.pdb is missing. + run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.D.pdb is missing. - run_tests: C0700odd.6.pdb is missing. - run_tests: C0700odd.8.pdb is missing. - run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.2.pdb is missing. - run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.F.pdb is missing. - run_tests: C0700odd.C.pdb is missing. - run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.5.pdb is missing. - run_tests: C0700odd.A.pdb is missing. - run_tests: C0700odd.B.pdb is missing. - run_tests: C0700odd.4.pdb is missing. + run_tests: C0700odd.3.pdb is missing. + run_tests: C0700odd.E.pdb is missing. + run_tests: C0700odd.C.pdb is missing. + run_tests: C0700odd.8.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... @@ -8408,8 +8442,8 @@ run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... - run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0020pdb.pdb is missing. + run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... @@ -8419,8 +8453,8 @@ run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... - run_tests: C0030pkl.pdb is missing. run_tests: C0030pkl.log DIFFERS over about 4 lines. + run_tests: C0030pkl.pdb is missing. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... @@ -8429,8 +8463,8 @@ run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.log DIFFERS over about 61 lines. - run_tests: C0080create.2.pdb is missing. run_tests: C0080create.1.pdb is missing. + run_tests: C0080create.2.pdb is missing. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... @@ -8465,22 +8499,22 @@ run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... + run_tests: C0700odd.A.pdb is missing. + run_tests: C0700odd.6.pdb is missing. + run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.9.pdb is missing. - run_tests: C0700odd.E.pdb is missing. + run_tests: C0700odd.4.pdb is missing. + run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.1.pdb is missing. + run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.D.pdb is missing. - run_tests: C0700odd.6.pdb is missing. - run_tests: C0700odd.8.pdb is missing. - run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.2.pdb is missing. - run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.F.pdb is missing. - run_tests: C0700odd.C.pdb is missing. - run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.5.pdb is missing. - run_tests: C0700odd.A.pdb is missing. - run_tests: C0700odd.B.pdb is missing. - run_tests: C0700odd.4.pdb is missing. + run_tests: C0700odd.3.pdb is missing. + run_tests: C0700odd.E.pdb is missing. + run_tests: C0700odd.C.pdb is missing. + run_tests: C0700odd.8.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... @@ -8543,437 +8577,437 @@ creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7 creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/io.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/arc.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/completing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/importing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms -creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/solvate.py to solvate.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/io.py to io.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/state.py to state.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/amber.py to amber.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/realtime.py to realtime.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/keyword.py to keyword.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/place.py to place.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_residues.py to protein_residues.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cpv.py to cpv.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/sdf.py to sdf.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber.py to protein_amber.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pdb.py to pdb.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_amber.py to water_amber.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_residues.py to water_residues.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mae.py to mae.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol.py to mol.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_amber.py to bond_amber.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/xyz.py to xyz.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmd.py to mmd.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gms.py to gms.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol2.py to mol2.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/brick.py to brick.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol.py to mol.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pdb.py to pdb.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein.py to protein.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_mmff.py to protein_mmff.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pkl.py to pkl.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/models.py to models.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_mmff.py to bond_mmff.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_mmff.py to protein_mmff.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber99.py to protein_amber99.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/map.py to map.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/hetatm.py to hetatm.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/neighbor.py to neighbor.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cc1.py to cc1.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cex.py to cex.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cif.py to cif.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/lst.py to lst.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein.py to protein.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/place.py to place.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gamess1.py to gamess1.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_amber.py to water_amber.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mass.py to mass.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/state.py to state.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/realtime.py to realtime.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol2.py to mol2.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/util.py to util.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/commands.py to commands.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/util.py to util.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/lst.py to lst.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber99.py to protein_amber99.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/charge.py to charge.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/state.py to state.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cpv.py to cpv.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cif.py to cif.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/keyword.py to keyword.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/realtime.py to realtime.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/state.py to state.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf/io.py to io.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mae.py to mae.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/assign.py to assign.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/sdf.py to sdf.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/charge.py to charge.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/map.py to map.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_residues.py to water_residues.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/assign.py to assign.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/neighbor.py to neighbor.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/brick.py to brick.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cex.py to cex.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cc1.py to cc1.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/models.py to models.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/arc.py to arc.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/solvate.py to solvate.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mass.py to mass.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bonds.py to bonds.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/dictdb.py to dictdb.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/volume.py to volume.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Demo.py to Demo.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Setting.py to Setting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/morphing.py to morphing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selecting.py to selecting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/invocation.py to invocation.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/setting.py to setting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/xyz.py to xyz.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gms.py to gms.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keywords.py to keywords.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/shortcut.py to shortcut.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/fitting.py to fitting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cmd.py to cmd.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizarding.py to wizarding.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parsing.py to parsing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/repository.py to repository.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/installation.py to installation.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui.py to managergui.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/menu.py to menu.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/computing.py to computing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parser.py to parser.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xray.py to xray.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cgo.py to cgo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt/utils.py to utils.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/commanding.py to commanding.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editing.py to editing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/callback.py to callback.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xwin.py to xwin.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/controlling.py to controlling.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/feedingback.py to feedingback.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editor.py to editor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/completing.py to completing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keywords.py to keywords.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/querying.py to querying.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/movie.py to movie.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/headering.py to headering.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/exporting.py to exporting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/helping.py to helping.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/gui.py to gui.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__main__.py to __main__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/m4x.py to m4x.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorprinting.py to colorprinting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keyboard.py to keyboard.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/rpc.py to rpc.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/diagnosing.py to diagnosing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selecting.py to selecting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/gui.py to gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/monitoring.py to monitoring.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/externing.py to externing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/movie.py to movie.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/_gui.py to _gui.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizarding.py to wizarding.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/util.py to util.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants.py to constants.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selector.py to selector.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/fitting.py to fitting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/preset.py to preset.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/computing.py to computing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/viewing.py to viewing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__main__.py to __main__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/lazyio.py to lazyio.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/api.py to api.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/internal.py to internal.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/vfont.py to vfont.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parser.py to parser.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/moving.py to moving.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/checking.py to checking.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorramping.py to colorramping.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/creating.py to creating.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/preset.py to preset.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/benchmark.py to benchmark.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/repository.py to repository.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui.py to managergui.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/installation.py to installation.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/diagnosing.py to diagnosing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keyboard.py to keyboard.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/querying.py to querying.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cgo.py to cgo.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/experimenting.py to experimenting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xwin.py to xwin.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/morphing.py to morphing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/cleanup.py to cleanup.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/dragging.py to dragging.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/density.py to density.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/command.py to command.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/label.py to label.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/renaming.py to renaming.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/appearance.py to appearance.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/command.py to command.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/message.py to message.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/distance.py to distance.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/annotation.py to annotation.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/toggle.py to toggle.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/security.py to security.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/demo.py to demo.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/fedora.py to fedora.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/charge.py to charge.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/sculpting.py to sculpting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/density.py to density.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/filter.py to filter.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/dragging.py to dragging.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/box.py to box.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/label.py to label.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/benchmark.py to benchmark.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/charge.py to charge.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/distance.py to distance.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/measurement.py to measurement.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/experimenting.py to experimenting.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/viewing.py to viewing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/util.py to util.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants_palette.py to constants_palette.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/moving.py to moving.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/locking.py to locking.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/sculpting.py to sculpting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/demo.py to demo.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/povray.py to povray.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/monitoring.py to monitoring.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/callback.py to callback.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/controlling.py to controlling.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/vfont.py to vfont.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editing.py to editing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/internal.py to internal.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/exporting.py to exporting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/pymolhttpd.py to pymolhttpd.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/setting.py to setting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorprinting.py to colorprinting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/m4x.py to m4x.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/importing.py to importing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/povray.py to povray.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/externing.py to externing.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/keymapping.py to keymapping.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/volume.py to volume.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xray.py to xray.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/menu.py to menu.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parsing.py to parsing.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/creating.py to creating.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/helping.py to helping.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/checking.py to checking.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editor.py to editor.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cmd.py to cmd.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/headering.py to headering.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selector.py to selector.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/feedingback.py to feedingback.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/api.py to api.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/invocation.py to invocation.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/locking.py to locking.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/commanding.py to commanding.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/cmd2.py to cmd2.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/volume.py to volume.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/keymapping.py to keymapping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/builder.py to builder.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pml.py to pml.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/python.py to python.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/TextEditor.py to TextEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/python.py to python.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pml.py to pml.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms/__init__.py to __init__.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/cmd2.py to cmd2.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Demo.py to Demo.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Setting.py to Setting.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/volume.py to volume.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/__init__.py to __init__.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc running install_egg_info Writing /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol-2.2.0.egg-info creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/bin @@ -8992,437 +9026,437 @@ creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7 creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/io.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-i386-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-i386-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/arc.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-i386-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/completing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-i386-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/importing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms -creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 -copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup +copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/solvate.py to solvate.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/io.py to io.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/state.py to state.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/amber.py to amber.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/realtime.py to realtime.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/keyword.py to keyword.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/place.py to place.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_residues.py to protein_residues.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cpv.py to cpv.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/sdf.py to sdf.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber.py to protein_amber.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pdb.py to pdb.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_amber.py to water_amber.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_residues.py to water_residues.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mae.py to mae.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol.py to mol.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_amber.py to bond_amber.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/xyz.py to xyz.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmd.py to mmd.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gms.py to gms.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol2.py to mol2.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/brick.py to brick.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol.py to mol.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pdb.py to pdb.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein.py to protein.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pkl.py to pkl.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/models.py to models.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/map.py to map.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/hetatm.py to hetatm.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/neighbor.py to neighbor.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cc1.py to cc1.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cex.py to cex.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cif.py to cif.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/lst.py to lst.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein.py to protein.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/place.py to place.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gamess1.py to gamess1.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_amber.py to water_amber.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mass.py to mass.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/state.py to state.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/realtime.py to realtime.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol2.py to mol2.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/util.py to util.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/commands.py to commands.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/realtime.py to realtime.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/util.py to util.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/lst.py to lst.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/charge.py to charge.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/state.py to state.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cpv.py to cpv.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cif.py to cif.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/keyword.py to keyword.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/realtime.py to realtime.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/state.py to state.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/amber.py to amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf/io.py to io.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mae.py to mae.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/assign.py to assign.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/sdf.py to sdf.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/charge.py to charge.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/amber99.py to amber99.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/map.py to map.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_residues.py to water_residues.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/assign.py to assign.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/neighbor.py to neighbor.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/brick.py to brick.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cex.py to cex.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cc1.py to cc1.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/models.py to models.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/arc.py to arc.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/solvate.py to solvate.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mass.py to mass.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bonds.py to bonds.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber.py to protein_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/dictdb.py to dictdb.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/volume.py to volume.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Demo.py to Demo.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Setting.py to Setting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/morphing.py to morphing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selecting.py to selecting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/invocation.py to invocation.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/setting.py to setting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/xyz.py to xyz.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gms.py to gms.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keywords.py to keywords.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/shortcut.py to shortcut.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/fitting.py to fitting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cmd.py to cmd.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizarding.py to wizarding.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parsing.py to parsing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/repository.py to repository.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/installation.py to installation.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui.py to managergui.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/menu.py to menu.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/computing.py to computing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parser.py to parser.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xray.py to xray.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cgo.py to cgo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt/utils.py to utils.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/commanding.py to commanding.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editing.py to editing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/callback.py to callback.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xwin.py to xwin.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/controlling.py to controlling.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/feedingback.py to feedingback.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editor.py to editor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/completing.py to completing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keywords.py to keywords.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/querying.py to querying.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/movie.py to movie.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/headering.py to headering.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/exporting.py to exporting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/helping.py to helping.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/gui.py to gui.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__main__.py to __main__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/m4x.py to m4x.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorprinting.py to colorprinting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keyboard.py to keyboard.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorramping.py to colorramping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/rpc.py to rpc.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/diagnosing.py to diagnosing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selecting.py to selecting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/gui.py to gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/monitoring.py to monitoring.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/externing.py to externing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/movie.py to movie.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/_gui.py to _gui.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizarding.py to wizarding.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/util.py to util.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants.py to constants.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selector.py to selector.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/fitting.py to fitting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/preset.py to preset.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/computing.py to computing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/viewing.py to viewing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__main__.py to __main__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/lazyio.py to lazyio.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/api.py to api.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/internal.py to internal.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/vfont.py to vfont.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parser.py to parser.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/moving.py to moving.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants_palette.py to constants_palette.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/checking.py to checking.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorramping.py to colorramping.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/creating.py to creating.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/preset.py to preset.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/repository.py to repository.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui.py to managergui.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/installation.py to installation.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/diagnosing.py to diagnosing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keyboard.py to keyboard.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/querying.py to querying.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cgo.py to cgo.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/experimenting.py to experimenting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xwin.py to xwin.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/morphing.py to morphing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/dragging.py to dragging.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/density.py to density.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/command.py to command.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/label.py to label.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/renaming.py to renaming.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/appearance.py to appearance.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/command.py to command.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/message.py to message.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/distance.py to distance.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/annotation.py to annotation.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/toggle.py to toggle.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/security.py to security.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/demo.py to demo.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/filter.py to filter.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/fedora.py to fedora.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/charge.py to charge.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/renaming.py to renaming.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/density.py to density.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/filter.py to filter.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/dragging.py to dragging.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/annotation.py to annotation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/box.py to box.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/label.py to label.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/charge.py to charge.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/distance.py to distance.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/toggle.py to toggle.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/measurement.py to measurement.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/experimenting.py to experimenting.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/viewing.py to viewing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/util.py to util.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants_palette.py to constants_palette.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/moving.py to moving.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/locking.py to locking.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/demo.py to demo.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/povray.py to povray.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/monitoring.py to monitoring.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/callback.py to callback.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/controlling.py to controlling.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/vfont.py to vfont.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editing.py to editing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/internal.py to internal.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/exporting.py to exporting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/setting.py to setting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorprinting.py to colorprinting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/m4x.py to m4x.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/importing.py to importing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/povray.py to povray.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/externing.py to externing.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/volume.py to volume.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xray.py to xray.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/menu.py to menu.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parsing.py to parsing.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/creating.py to creating.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/helping.py to helping.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/checking.py to checking.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editor.py to editor.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cmd.py to cmd.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/headering.py to headering.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selector.py to selector.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/feedingback.py to feedingback.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/api.py to api.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/invocation.py to invocation.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/locking.py to locking.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/commanding.py to commanding.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/cmd2.py to cmd2.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/volume.py to volume.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/builder.py to builder.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/python.py to python.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/python.py to python.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/cmd2.py to cmd2.cpython-37.pyc -byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Demo.py to Demo.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Setting.py to Setting.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/volume.py to volume.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.cpython-37.pyc +byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-37.pyc running install_egg_info Writing /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol-2.2.0.egg-info creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/bin @@ -9493,12 +9527,12 @@ dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined -dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined -dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined -dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Versions} unused, but is defined +dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined +dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined +dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Versions} unused, but is defined @@ -9507,24 +9541,26 @@ dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild +dpkg-deb: building package 'python-pymol-dbgsym' in '../python-pymol-dbgsym_2.2.0+dfsg-4_i386.deb'. dpkg-deb: building package 'pymol' in '../pymol_2.2.0+dfsg-4_all.deb'. dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.2.0+dfsg-4_i386.deb'. -dpkg-deb: building package 'python-pymol-dbgsym' in '../python-pymol-dbgsym_2.2.0+dfsg-4_i386.deb'. +dpkg-deb: building package 'python-pymol' in '../python-pymol_2.2.0+dfsg-4_i386.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.2.0+dfsg-4_all.deb'. dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.2.0+dfsg-4_i386.deb'. -dpkg-deb: building package 'python-pymol' in '../python-pymol_2.2.0+dfsg-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pymol_2.2.0+dfsg-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/18077/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18077/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/20499 and its subdirectories -I: Current time: Sat Jun 27 11:36:09 -12 2020 -I: pbuilder-time-stamp: 1593300969 +I: removing directory /srv/workspace/pbuilder/18077 and its subdirectories +I: Current time: Sat Jul 31 20:02:10 +14 2021 +I: pbuilder-time-stamp: 1627711330