Diff of the two buildlogs: -- --- b1/build.log 2020-05-12 15:09:37.312026058 +0000 +++ b2/build.log 2020-05-12 15:10:53.654512905 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 12 03:00:02 -12 2020 -I: pbuilder-time-stamp: 1589295602 +I: Current time: Tue Jun 15 11:32:38 +14 2021 +I: pbuilder-time-stamp: 1623706358 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Fri Dec 21 04:09:36 2018 -12 +gpgv: Signature made Sat Dec 22 06:09:36 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,6 +31,172 @@ dpkg-source: info: applying do_not_exclude_certain_architectures_explicitly.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/62490/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/62490/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/62490/tmp/hooks/D02_print_environment starting +I: set + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 + IFS=' + ' + INVOCATION_ID=44fd8f7646c64ad88a873975c03321de + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=62490 + PS4='+ ' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.KShqw9HJE0/pbuilderrc_21Zl --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.KShqw9HJE0/b2 --logfile b2/build.log ngs-sdk_2.9.3-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 +I: uname -a + Linux i-capture-the-hostname 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) x86_64 GNU/Linux +I: ls -l /bin + total 5476 + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 15 11:32 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 14 04:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/62490/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -295,7 +461,7 @@ Get: 209 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 210 http://deb.debian.org/debian buster/main i386 python-markdown all 3.0.1-3 [60.6 kB] Get: 211 http://deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] -Fetched 424 MB in 1min 37s (4371 kB/s) +Fetched 424 MB in 6s (67.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -1187,134 +1353,134 @@ update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:SecureSign_RootCA11.pem +Adding debian:COMODO_RSA_Certification_Authority.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:Security_Communication_Root_CA.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem -Adding debian:SecureTrust_CA.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:DST_Root_CA_X3.pem +Adding debian:Actalis_Authentication_Root_CA.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:Certplus_Class_2_Primary_CA.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:GeoTrust_Universal_CA_2.pem -Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem -Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:Certum_Trusted_Network_CA.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:TeliaSonera_Root_CA_v1.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:Certigna.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem -Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:Starfield_Class_2_CA.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem -Adding debian:GeoTrust_Global_CA.pem -Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:COMODO_Certification_Authority.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:Sonera_Class_2_Root_CA.pem +Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Secure_Global_CA.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem -Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:DigiCert_Global_Root_CA.pem Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:DigiCert_Assured_ID_Root_G3.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:EC-ACC.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:COMODO_ECC_Certification_Authority.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:Certigna.pem Adding debian:thawte_Primary_Root_CA.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:GeoTrust_Primary_Certification_Authority.pem -Adding debian:Cybertrust_Global_Root.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:Deutsche_Telekom_Root_CA_2.pem -Adding debian:Taiwan_GRCA.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:AffirmTrust_Premium.pem Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:Izenpe.com.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem -Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:GeoTrust_Universal_CA.pem +Adding debian:AddTrust_External_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem -Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:GlobalSign_Root_CA.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:Global_Chambersign_Root_-_2008.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:ISRG_Root_X1.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:Trustis_FPS_Root_CA.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:thawte_Primary_Root_CA_-_G2.pem +Adding debian:ACCVRAIZ1.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:EC-ACC.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:LuxTrust_Global_Root_2.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:thawte_Primary_Root_CA_-_G2.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:Network_Solutions_Certificate_Authority.pem +Adding debian:TWCA_Root_Certification_Authority.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:Security_Communication_RootCA2.pem Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem +Adding debian:Taiwan_GRCA.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem +Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:SZAFIR_ROOT_CA2.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:Cybertrust_Global_Root.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:GeoTrust_Universal_CA_2.pem +Adding debian:Starfield_Class_2_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem -Adding debian:Certinomis_-_Root_CA.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem +Adding debian:SecureTrust_CA.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:XRamp_Global_CA_Root.pem -Adding debian:AddTrust_External_Root.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:Amazon_Root_CA_1.pem +Adding debian:GeoTrust_Global_CA.pem +Adding debian:DigiCert_Global_Root_CA.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem -Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:thawte_Primary_Root_CA_-_G3.pem -Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem +Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:Izenpe.com.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:Deutsche_Telekom_Root_CA_2.pem +Adding debian:DigiCert_Assured_ID_Root_G3.pem +Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:COMODO_ECC_Certification_Authority.pem +Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:QuoVadis_Root_CA.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:AffirmTrust_Commercial.pem +Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem +Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:GeoTrust_Universal_CA.pem +Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:LuxTrust_Global_Root_2.pem +Adding debian:DST_Root_CA_X3.pem +Adding debian:Certinomis_-_Root_CA.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:GeoTrust_Primary_Certification_Authority.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:SecureSign_RootCA11.pem +Adding debian:GlobalSign_Root_CA_-_R6.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:Comodo_AAA_Services_root.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem done. Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up debhelper (12.1.1) ... @@ -1343,7 +1509,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ngs-sdk-2.9.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/ngs-sdk-2.9.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ngs-sdk dpkg-buildpackage: info: source version 2.9.3-1 dpkg-buildpackage: info: source distribution unstable @@ -1382,21 +1548,21 @@ Configuring NGS-SDK package checking system type... Linux checking OS distributor... -checking machine architecture... i686 -checking for supported architecture... i686 (32 bits) is supported +checking machine architecture... x86_64 +checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes configure: creating 'ld.linux.exe_cmd.sh' -configure: creating 'Makefile.config.linux.i386' +configure: creating 'Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk -build output path: /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel +build output path: /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib @@ -1409,13 +1575,13 @@ Configuring NGS-JAVA package checking system type... Linux checking OS distributor... -checking machine architecture... i686 -checking for supported architecture... i686 (32 bits) is supported +checking machine architecture... x86_64 +checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... jdk tool chain is supported checking for javac... yes -configure: creating 'Makefile.config.linux.i386' +configure: creating 'Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release @@ -1432,25 +1598,25 @@ Configuring NGS-PYTHON package checking system type... Linux checking OS distributor... -checking machine architecture... i686 -checking for supported architecture... i686 (32 bits) is supported +checking machine architecture... x86_64 +checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes checking for ngs-sdk package... configure: optional ngs-sdk package not found: skipped. checking for ncbi-vdb package... configure: optional ncbi-vdb package not found: skipped. configure: creating 'ld.linux.exe_cmd.sh' -configure: creating 'Makefile.config.linux.i386' +configure: creating 'Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.9.3/ngs-python/i386-linux-gnu/ngs-python -build output path: /build/ngs-sdk-2.9.3/ngs-python/i386-linux-gnu/ngs-python/linux/gcc/i386/rel +build output path: /build/ngs-sdk-2.9.3/ngs-python/i386-linux-gnu/ngs-python/linux/gcc/x86_64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib @@ -1468,7 +1634,7 @@ echo "DEBPKGNAME: EBPKGNAME" DEBPKGNAME: EBPKGNAME dh_auto_build --sourcedirectory=ngs-sdk - cd ngs-sdk && make -j10 + cd ngs-sdk && make -j18 make[2]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk' make[3]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/dispatch' make[3]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/adapter' @@ -1476,23 +1642,36 @@ make[4]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/c++' make[4]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/java' make[4]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/python' -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++ +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, + from PileupItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, from PileupEventItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -1501,19 +1680,38 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from PileupItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from PileupEventItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1538,31 +1736,74 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from PileupItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from PileupEventItf.cpp:28: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1587,9 +1828,16 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from PileupItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1605,9 +1853,16 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from PileupItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1631,6 +1886,13 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from PileupItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from PileupEventItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -1638,12 +1900,27 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +PileupItf.cpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +PileupItf.cpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ PileupEventItf.cpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +PileupItf.cpp:103:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +PileupItf.cpp:123:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ PileupEventItf.cpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +PileupItf.cpp:143:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ PileupEventItf.cpp:103:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -1680,167 +1957,639 @@ PileupEventItf.cpp:323:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:31, - from ReferenceSequenceItf.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from FragmentItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, + from StringItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from ReferenceSequenceItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:31, + from StatisticsItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, + from ReadGroupItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from StringItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from FragmentItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceSequenceItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from StatisticsItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from StringItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReadGroupItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from FragmentItf.cpp:28: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceSequenceItf.cpp:29: +In file included from StatisticsItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReadGroupItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from FragmentItf.cpp:29: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from ReferenceSequenceItf.cpp:30: +In file included from StatisticsItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReadGroupItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from Refcount.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from StringItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReadGroupItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from Refcount.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from FragmentItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from StatisticsItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReadGroupItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, + from ReferenceItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:31, - from py_AlignmentItf.cpp:30: + from AlignmentItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from py_AlignmentItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from Refcount.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReferenceItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from AlignmentItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +FragmentItf.cpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +StatisticsItf.cpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +StringItf.cpp:130:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +StringItf.cpp:136:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +FragmentItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +ReadGroupItf.cpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +StatisticsItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +FragmentItf.cpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from ReferenceItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +FragmentItf.cpp:93:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from py_AlignmentItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +StatisticsItf.cpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadGroupItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +FragmentItf.cpp:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from AlignmentItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +FragmentItf.cpp:119:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReferenceItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +StatisticsItf.cpp:121:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadGroupItf.cpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +FragmentItf.cpp:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from AlignmentItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +StatisticsItf.cpp:141:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +Refcount.cpp:98:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReferenceItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +FragmentItf.cpp:145:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +FragmentItf.cpp:165:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +FragmentItf.cpp:189:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from AlignmentItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReferenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReferenceItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReferenceItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from VTable.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, + from ReadItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReadItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:31, + from ReferenceSequenceItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReadItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReferenceSequenceItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:31, @@ -1848,13 +2597,52 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +VTable.cpp:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReadItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReferenceSequenceItf.cpp:28: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from ReferenceSequenceItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from ReadCollectionItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1888,9 +2676,16 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from ReadItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1901,6 +2696,13 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from ReferenceSequenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -1951,6 +2753,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:32: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -1976,6 +2781,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -1994,6 +2802,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:32: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -2016,6 +2827,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:33: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -2041,6 +2855,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:145:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -2065,6 +2882,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:165:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -2089,10 +2909,19 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:185:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadItf.cpp:191:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:34: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:197:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -2105,6 +2934,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadItf.cpp:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:36: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -2112,6 +2944,15 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +ReadItf.cpp:223:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadItf.cpp:229:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadItf.cpp:249:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from ReadCollectionItf.cpp:37: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -2120,14 +2961,14 @@ throw ( ErrorMsg ) ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:31, - from py_AlignmentIteratorItf.cpp:30: + from py_AlignmentItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from py_AlignmentIteratorItf.cpp:30: +In file included from py_AlignmentItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -2200,212 +3041,154 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_AlignmentItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:31, + from jni_ReadCollectionItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadCollectionItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadCollectionItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadCollectionItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, - from ReferenceSequenceItf.cpp:34: +In file included from jni_ReadCollectionItf.cpp:33: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -2478,537 +3261,1006 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, - from ReferenceSequenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceSequenceItf.cpp:64:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceSequenceItf.cpp:84:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceSequenceItf.cpp:104:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceSequenceItf.cpp:124:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadCollectionItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_ReadCollectionItf.cpp:35: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_ReadCollectionItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceSequenceItf.cpp:130:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceSequenceItf.cpp:150:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceSequenceItf.cpp:156:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:31, - from jni_ReadCollectionItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, - from PileupItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from PileupItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from PileupItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:33: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:35: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadCollectionItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, + from AlignmentItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, + from ReferenceItf.cpp:36: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:64:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:84:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:108:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:104:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:124:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:148:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:144:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:168:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:164:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:174:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:184:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:194:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:200:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:204:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:221:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:224:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:228:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:244:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:264:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:259:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:284:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:279:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:308:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:307:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:328:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:313:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:348:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:368:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:340:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:388:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from PackageItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +AlignmentItf.cpp:408:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from PackageItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +AlignmentItf.cpp:428:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReferenceItf.cpp:375:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from PileupItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +ReferenceItf.cpp:402:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:485:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from PackageItf.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from PileupItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +AlignmentItf.cpp:505:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from PackageItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -In file included from PileupItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +AlignmentItf.cpp:525:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupItf.cpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +ReferenceItf.cpp:437:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupItf.cpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from PackageItf.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +AlignmentItf.cpp:545:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupItf.cpp:103:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReferenceItf.cpp:443:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupItf.cpp:123:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +PackageItf.cpp:40:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupItf.cpp:143:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +AlignmentItf.cpp:565:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, - from ReferenceItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReferenceItf.cpp:470:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReferenceItf.cpp:505:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceItf.cpp:29: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, + from ReferenceSequenceItf.cpp:34: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3081,25 +4333,75 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReferenceItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from ReferenceItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from ReferenceItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, + from ReferenceSequenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, @@ -3120,6 +4422,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReferenceSequenceItf.cpp:64:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, @@ -3130,11 +4435,17 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +ReferenceSequenceItf.cpp:84:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, from ReadCollectionItf.cpp:41: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReferenceSequenceItf.cpp:104:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3162,9 +4473,15 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReferenceSequenceItf.cpp:124:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReferenceSequenceItf.cpp:130:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, @@ -3178,6 +4495,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReferenceSequenceItf.cpp:150:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3187,6 +4507,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReferenceSequenceItf.cpp:156:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3418,44 +4741,21 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:31, - from ReadCollection.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:107:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:109:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:118:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:120:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:122:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:132:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3473,6 +4773,62 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:66:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:96:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:106:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadCollectionItf.cpp:70:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:31, + from ReadCollection.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +ReadCollectionItf.cpp:90:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, @@ -3487,22 +4843,13 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:66:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:143:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:163:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, @@ -3518,18 +4865,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:96:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, @@ -3542,10 +4880,10 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:106:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:216:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, @@ -3567,6 +4905,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadCollectionItf.cpp:236:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3585,12 +4926,12 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:70:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadCollectionItf.cpp:256:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, @@ -3603,9 +4944,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:90:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3615,6 +4953,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadCollectionItf.cpp:279:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3644,10 +4985,10 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:302:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:143:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -3656,7 +4997,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:163:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:325:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -3665,16 +5006,19 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +ReadCollectionItf.cpp:345:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:216:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:368:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, @@ -3692,9 +5036,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:63:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:236:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:71:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3708,7 +5049,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/FragmentIterator.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:256:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ReadCollectionItf.cpp:391:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, @@ -3725,6 +5066,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ReadCollectionItf.cpp:411:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3740,9 +5084,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:107:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:279:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:109:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3761,9 +5102,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:134:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:302:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:34, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, @@ -3783,9 +5121,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:325:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3807,9 +5142,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadCollectionItf.cpp:345:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3828,9 +5160,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:56:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:368:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -3840,9 +5169,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:391:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -3852,9 +5178,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadCollectionItf.cpp:411:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -3907,6 +5230,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:113:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -3942,6 +5266,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -4691,7 +6016,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -4723,27 +6047,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -4753,221 +6059,36 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:35, from ReadCollection.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceIterator.hpp:81, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:35, from ReadCollection.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReferenceIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from ReadCollection.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:71:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -4977,11 +6098,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, - from ReferenceItf.cpp:36: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:116:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -4994,9 +6110,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:141:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:143:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -5007,45 +6120,24 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:153:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:165:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:172:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:181:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:189:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:191:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:219, from ReadCollection.cpp:27: @@ -5055,9 +6147,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -5067,27 +6156,18 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -5097,62 +6177,32 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadCollection.hpp:219, from ReadCollection.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -5173,15 +6223,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceItf.cpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceItf.cpp:108:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -5191,143 +6235,47 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceItf.cpp:128:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:148:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:168:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:174:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:194:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:200:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:221:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:228:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadCollection.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReferenceItf.cpp:259:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:279:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:307:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:313:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:340:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:375:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:402:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:437:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:443:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:470:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReferenceItf.cpp:505:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, - from ReadGroupItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from ReadGroupItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from ReadGroupItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from ReadGroupItf.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from ReadGroupItf.cpp:30: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from ErrBlock.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +ErrBlock.cpp:37:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:31, - from AlignmentItf.cpp:27: + from py_AlignmentIteratorItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from AlignmentItf.cpp:27: +In file included from py_AlignmentIteratorItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReadGroupItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -5391,37 +6339,164 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from AlignmentItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from py_FragmentItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from py_FragmentItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ReadGroupItf.cpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from AlignmentItf.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, + from jni_ReferenceIteratorItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadGroupItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadGroupItf.cpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from AlignmentItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +In file included from jni_ReferenceIteratorItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_ReferenceIteratorItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from py_FragmentIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from py_FragmentIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceSequence.hpp:35, from ReferenceSequence.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -5550,9 +6625,16 @@ ReferenceSequence.cpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from AlignmentItf.cpp:34: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from py_PackageItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -5568,614 +6650,261 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from AlignmentItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from AlignmentItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from AlignmentItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from py_PackageItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from py_PackageItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from AlignmentItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, + from py_PackageItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from AlignmentItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_PackageItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, + from jni_ReferenceItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReferenceItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, - from AlignmentItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:64:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:84:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:104:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:124:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:144:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:164:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:184:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:204:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:224:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:244:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:264:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:284:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:308:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:328:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:348:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:368:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:388:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:408:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:428:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:485:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:505:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:525:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:545:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -AlignmentItf.cpp:565:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, - from ReadItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from ReadItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReferenceItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReferenceItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReadItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from ReadItf.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from ReadItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:145:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:165:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:185:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:191:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:197:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:217:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:223:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:229:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadItf.cpp:249:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, - from jni_ReferenceIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_ReferenceIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReferenceIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReferenceItf.cpp:33: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReferenceItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from FragmentItf.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, + from py_PileupEventItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from FragmentItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_PileupEventItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from FragmentItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from FragmentItf.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from FragmentItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -FragmentItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:93:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:119:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:125:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:145:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:165:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -FragmentItf.cpp:189:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, @@ -6504,6 +7233,11 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:31, + from jni_ReferenceSequenceItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Reference.hpp:31, @@ -6512,6 +7246,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -6524,15 +7261,44 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from jni_ReferenceSequenceItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from jni_ReferenceSequenceItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -7062,6 +7828,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Reference.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from ReferenceIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReferenceIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -7086,214 +7853,70 @@ ReferenceIterator.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:31, - from StatisticsItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from StatisticsItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from StatisticsItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from StatisticsItf.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from StatisticsItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StatisticsItf.cpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StatisticsItf.cpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StatisticsItf.cpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StatisticsItf.cpp:121:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StatisticsItf.cpp:141:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, - from jni_ReferenceItf.cpp:31: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, + from py_PileupEventIteratorItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_ReferenceItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from jni_ReferenceItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from jni_ReferenceItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_PileupEventIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o +make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/dispatch' +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, + from py_PileupItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -In file included from jni_ReferenceItf.cpp:33: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from py_PileupItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -7309,181 +7932,89 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReferenceItf.cpp:34: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from StringItf.cpp:27: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, + from py_PileupIteratorItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from StringItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from StringItf.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from StringItf.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StringItf.cpp:130:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -StringItf.cpp:136:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from PackageItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_PileupIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from PackageItf.cpp:27: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:31, + from py_ReadCollectionItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from PackageItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from PackageItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from PackageItf.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_ReadCollectionItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -PackageItf.cpp:40:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from py_FragmentItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_FragmentItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/dispatch -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from VTable.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from Refcount.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from Refcount.cpp:28: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -VTable.cpp:113:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from Refcount.cpp:29: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/VTable.hpp:85:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -Refcount.cpp:98:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, @@ -7630,7 +8161,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -7643,13 +8173,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from ErrBlock.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ErrBlock.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -7674,9 +8197,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ErrBlock.cpp:37:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -7927,6 +8447,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:97:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:159:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8208,12 +8729,20 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Reference.hpp:188:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, + from py_ReadGroupItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Reference.hpp:190:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Reference.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Reference.hpp:212:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8238,12 +8767,22 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from py_ReadGroupItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8359,59 +8898,66 @@ Reference.cpp:50:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:31, - from jni_ReferenceSequenceItf.cpp:31: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 +ln -s libngs-adapt-c++.a.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, + from py_ReadItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_ReferenceSequenceItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_ReadItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReferenceSequenceItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from py_FragmentIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -In file included from py_FragmentIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from py_ReadItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8442,86 +8988,59 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-disp.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/dispatch/ErrorMsg.pic.o -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/dispatch' -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, - from jni_PileupIteratorItf.cpp:31: +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +ln -s libngs-adapt-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a +make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/adapter' +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, + from py_ReadIteratorItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_PileupIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_ReadIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from py_PackageItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from py_PackageItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from py_PackageItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:31, - from py_PackageItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_PackageItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PackageItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:31, @@ -8639,6 +9158,11 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, + from py_ReferenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8648,6 +9172,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8686,36 +9213,106 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from py_ReferenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from py_ReferenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, + from py_ReadGroupIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupIterator.hpp:31, from PileupIterator.cpp:27: @@ -8725,6 +9322,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8755,9 +9355,19 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from py_ReadGroupIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8822,8 +9432,6 @@ PileupIterator.cpp:45:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:31, @@ -8834,6 +9442,11 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, + from py_ReferenceIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -8843,6 +9456,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, @@ -8856,6 +9472,34 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from py_ReferenceIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, @@ -8865,9 +9509,31 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from py_ReferenceIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, @@ -8876,9 +9542,24 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Pileup.hpp:31, from Pileup.cpp:27: @@ -9094,272 +9775,114 @@ Pileup.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, + from jni_PileupIteratorItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:77:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:83:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:97:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:159:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:166:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:174:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:181:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:195:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:227:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_PileupIteratorItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:239:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:241:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:255, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:31, + from py_ReferenceSequenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_ReferenceSequenceItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:31, + from py_StatisticsItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_StatisticsItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:255, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_Refcount.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:89, - from PileupEventIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEventIterator.hpp:46:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEventIterator.hpp:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -PileupEventIterator.cpp:38:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -PileupEventIterator.cpp:45:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, - from py_PileupEventItf.cpp:30: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, + from py_StringItf.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from py_PileupEventItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from py_StringItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, from jni_PileupEventIteratorItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -9485,61 +10008,12 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, - from py_PileupEventIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_PileupEventIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from PileupEvent.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9559,7 +10033,8 @@ from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from PileupEvent.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9569,7 +10044,8 @@ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from PileupEvent.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9578,14 +10054,16 @@ ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, - from PileupEvent.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from PileupEvent.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9630,7 +10108,8 @@ ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:255, - from PileupEvent.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9674,7 +10153,8 @@ throw ( ErrorMsg ); ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:255, - from PileupEvent.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:31, + from PileupEventIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -9711,17 +10191,38 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupEvent.cpp:40:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from PileupEventIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEventIterator.hpp:89, + from PileupEventIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEventIterator.hpp:46:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -PileupEvent.cpp:50:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEventIterator.hpp:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +PileupEventIterator.cpp:38:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +PileupEventIterator.cpp:45:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, + from PileupEvent.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9740,9 +10241,8 @@ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, + from PileupEvent.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9751,9 +10251,8 @@ ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, + from PileupEvent.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -9761,112 +10260,165 @@ throw ( ErrorMsg ); ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:35, + from PileupEvent.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from PileupEvent.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:77:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:83:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:97:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:159:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:166:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:174:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:181:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:195:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:227:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:239:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:241:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:255, + from PileupEvent.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, - from AlignmentIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, - from Alignment.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/PileupEvent.hpp:255, + from PileupEvent.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/PileupEvent.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +PileupEvent.cpp:40:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +PileupEvent.cpp:50:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, + from AlignmentIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, @@ -9877,24 +10429,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, @@ -9907,16 +10444,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from Alignment.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, @@ -9925,33 +10452,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, from AlignmentIterator.cpp:27: @@ -9961,75 +10464,33 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, @@ -10041,15 +10502,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10071,12 +10526,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, - from Alignment.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, @@ -10084,104 +10533,30 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, - from Alignment.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, from AlignmentIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -10190,9 +10565,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10214,15 +10586,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10235,9 +10601,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10253,9 +10616,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10268,21 +10628,12 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, @@ -10290,18 +10641,12 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10314,9 +10659,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10326,9 +10668,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10338,18 +10677,12 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10359,9 +10692,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10371,9 +10701,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10383,60 +10710,36 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/AlignmentIterator.hpp:31, from AlignmentIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -Alignment.cpp:38:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -Alignment.cpp:45:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -10464,6 +10767,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -10503,7 +10807,7 @@ AlignmentIterator.cpp:45:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:31, from jni_PileupEventItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -10512,7 +10816,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD In file included from jni_PileupEventItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupEventItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -10566,7 +10869,6 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/adapter -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10637,41 +10939,253 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, - from py_PileupItf.cpp:30: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from jni_AlignmentIteratorItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from py_PileupItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_AlignmentIteratorItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_AlignmentIteratorItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_AlignmentIteratorItf.cpp:33: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from jni_AlignmentItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from jni_AlignmentItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_AlignmentItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_AlignmentItf.cpp:33: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +make[4]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/python' +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10691,12 +11205,8 @@ from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10706,12 +11216,8 @@ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10720,24 +11226,16 @@ ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10773,12 +11271,8 @@ ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -10810,12 +11304,8 @@ throw ( ErrorMsg ); ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:31, + from Alignment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -10843,302 +11333,253 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from Alignment.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:57:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:63:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:71:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:81, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/FragmentIterator.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:55:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:93:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:99:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:106:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:112:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:97:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:146:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:154:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:107:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:171:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:109:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:179:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:118:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:187:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:120:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:200:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:122:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:205:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:132:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:211:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:134:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:217:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:34, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:225:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:240:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:245:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:250:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:255:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:267:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:269:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, + from Alignment.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:56:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:66:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:96:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:106:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:82, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:113:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Alignment.hpp:280, + from Alignment.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:59:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:96, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:96, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:72:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:77:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:82:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:87:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:92:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:97:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:102:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:107:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:112:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:117:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:122:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:127:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:132:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:137:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:142:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:152:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:157:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:162:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Alignment.hpp:167:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +Alignment.cpp:38:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +Alignment.cpp:45:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, + from jni_ReadGroupIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from jni_ReadGroupIteratorItf.cpp:30: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:82, - from ReadGroupIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroupIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadGroupIterator.cpp:39:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadGroupIterator.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++.a.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/adapter/ErrBlock.pic.o -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, @@ -11564,11 +12005,94 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, + from jni_ReadGroupItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from jni_ReadGroupItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_ReadGroupItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_ReadGroupItf.cpp:33: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_ReadGroupItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11591,7 +12115,9 @@ from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11604,7 +12130,9 @@ from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11616,7 +12144,9 @@ from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ @@ -11626,25 +12156,47 @@ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11660,12 +12212,28 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11700,40 +12268,106 @@ from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:89:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:91:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:117:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11746,24 +12380,64 @@ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:81, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/FragmentIterator.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:55:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11773,6 +12447,14 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:137, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:107:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11785,19 +12467,33 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:120:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:53:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:122:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:132:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:134:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:63:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:68:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:34, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11807,6 +12503,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:73:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11822,6 +12521,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:78:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -11831,349 +12533,416 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:83:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Fragment.hpp:88:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, - from ReadIterator.cpp:27: + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:56:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:63:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:71:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:66:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:96:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:81, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/FragmentIterator.hpp:48:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:106:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from ReadIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:55:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:61:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:82, - from ReadIterator.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -ReadIterator.cpp:39:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -ReadIterator.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:31, - from py_PileupIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_PileupIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:87:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/PileupItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from jni_AlignmentIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:97:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_AlignmentIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:105:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:107:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:109:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:118:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:120:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:122:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:132:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:134:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:96:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:34, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_AlignmentIteratorItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:106:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:150, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:31, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:51:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:82, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:56:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:61:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:66:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:71:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:113:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:76:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:81:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:86:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_AlignmentIteratorItf.cpp:33: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:31, - from py_ReadCollectionItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:91:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:96:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:101:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Read.hpp:106:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReadCollectionItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:59:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:67:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadIterator.hpp:82, + from ReadIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadIterator.cpp:39:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:96, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +ReadIterator.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroup.hpp:96, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:31, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroup.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadCollectionItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/ReadGroupIterator.hpp:82, + from ReadGroupIterator.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/ReadGroupIterator.hpp:47:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadGroupIterator.cpp:39:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +ReadGroupIterator.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++.a.2 -ln -s libngs-adapt-c++.a.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++.a.2 -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from jni_AlignmentItf.cpp:31: +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, + from jni_ReadIteratorItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_AlignmentItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadIteratorItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_AlignmentItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, @@ -12181,48 +12950,18 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, @@ -12233,25 +12972,9 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:96:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:98:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/AlignmentItf.hpp:100:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_AlignmentItf.cpp:33: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, @@ -12526,13 +13249,6 @@ Read.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++.a -ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++.a -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++-static.a -ln -s libngs-adapt-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-adapt-c++-static.a -make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/adapter' -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/c++ -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from FragmentIterator.cpp:27: @@ -12707,62 +13423,46 @@ FragmentIterator.cpp:46:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, - from jni_ReadGroupIteratorItf.cpp:30: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from jni_ReadItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_ReadGroupIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, - from py_ReadGroupItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReadGroupItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, - from jni_ReadGroupItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_ReadGroupItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadGroupItf.cpp:32: +In file included from jni_ReadItf.cpp:32: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -12802,31 +13502,59 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadGroupItf.cpp:33: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_ReadItf.cpp:33: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, + from jni_FragmentItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from jni_FragmentItf.cpp:31: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadGroupItf.cpp:34: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ); + ^~~~~ +In file included from jni_FragmentItf.cpp:32: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from Fragment.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] @@ -12976,75 +13704,15 @@ Fragment.cpp:49:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, - from Statistics.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, - from Statistics.cpp:27: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:31, + from jni_StatisticsItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, - from Statistics.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, - from Statistics.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from Statistics.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:113:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:35, - from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, - from Statistics.cpp:27: +In file included from jni_StatisticsItf.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -13060,93 +13728,11 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, - from Statistics.cpp:27: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -Statistics.cpp:39:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -Statistics.cpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, - from jni_ReadIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_ReadIteratorItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:31, - from py_ReadGroupIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReadGroupIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from jni_StatisticsItf.cpp:32: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadGroupItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ In file included from StringRef.cpp:27: @@ -13201,153 +13787,75 @@ StringRef.cpp:58:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from jni_ReadItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_ReadItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from jni_ReadItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, + from Statistics.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_ReadItf.cpp:33: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:31, - from jni_FragmentItf.cpp:31: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, + from Statistics.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from jni_FragmentItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, + from Statistics.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:122, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:35, + from Statistics.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/StringRef.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +In file included from Statistics.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_FragmentItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:113:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/c++/StringRef.pic.o -make[4]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/c++' -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/java -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:31, - from jni_StatisticsItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:115:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_StatisticsItf.cpp:31: +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:35, + from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, + from Statistics.cpp:27: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ @@ -13363,159 +13871,26 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ -In file included from jni_StatisticsItf.cpp:32: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from jni_String.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from jni_String.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, - from py_ReadItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReadItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from py_ReadItf.cpp:31: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/FragmentItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:31, - from py_ReadIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] +In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Statistics.hpp:133, + from Statistics.cpp:27: +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:52:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:57:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:62:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +/build/ngs-sdk-2.9.3/ngs-sdk/ngs/inl/Statistics.hpp:67:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +Statistics.cpp:39:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + throw ( ErrorMsg ) + ^~~~~ +Statistics.cpp:48:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from py_ReadIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReadItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ In file included from jni_Package.cpp:31: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/StringRef.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); @@ -13570,260 +13945,51 @@ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/language/python -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, - from py_ReferenceItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReferenceItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:31, - from py_ReferenceSequenceItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReferenceItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from py_ReferenceSequenceItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceSequenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:31, - from py_ReferenceIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_ReferenceIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:62:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:64:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:66:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:68:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:70:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:72:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:74:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:76:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:78:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:80:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from py_ReferenceIteratorItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:82:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:84:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:86:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:88:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:90:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:92:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/ReferenceItf.hpp:94:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:31, - from py_StatisticsItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ -In file included from py_StatisticsItf.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:52:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:56:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:58:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StatisticsItf.hpp:60:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/java/jni_ErrorMsg.pic.o -In file included from py_Refcount.cpp:30: -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ); - ^~~~~ -/build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - throw ( ErrorMsg ) - ^~~~~ In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:31, - from py_StringItf.cpp:30: + from jni_String.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:54:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/Refcount.hpp:81:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ) ^~~~~ -In file included from py_StringItf.cpp:30: +In file included from jni_String.cpp:30: /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:51:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ /build/ngs-sdk-2.9.3/ngs-sdk/ngs/itf/StringItf.hpp:53:13: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] throw ( ErrorMsg ); ^~~~~ +ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o +make[4]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/c++' +ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/java' -ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/language/python/py_StringItf.pic.o -make[4]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/language/python' make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk' -rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-c++ -rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-disp -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-c++ -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-disp -rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-java -rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-python -( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/i386\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-disp/manifest ) -( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/i386\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-c++/manifest ) -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-java -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-python -( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/i386\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-java/manifest ) -( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/i386\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-python/manifest ) -g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so.2.9.3 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib -lngs-disp -( ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++.a.2.9.3 `cat /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/ngs-disp/manifest` ) -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++.a.2 -ln -s libngs-c++.a.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++.a.2 -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++.a -ln -s libngs-c++.a.2 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++.a -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++-static.a -ln -s libngs-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-c++-static.a -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so.2 -ln -s libngs-sdk.so.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so.2 -rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so -ln -s libngs-sdk.so.2 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so +rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ +rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp +rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java +rm -rf /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python +( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest ) +( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest ) +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python +( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest ) +( cd /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.9.3\/ngs-sdk\/i386-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest ) +( ar rc /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2.9.3 `cat /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest` ) +g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2.9.3 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-disp +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2 +ln -s libngs-c++.a.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2 +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a +ln -s libngs-c++.a.2 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++-static.a +ln -s libngs-c++.a /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++-static.a +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2 +ln -s libngs-sdk.so.2.9.3 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2 +rm -f /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so +ln -s libngs-sdk.so.2 /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk' make[2]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk' # Remove ngs-bam generation, expects ngs-sdk and cannot find a way @@ -13831,7 +13997,7 @@ #cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=i386-linux-gnu --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" - cd ngs-java && make -j10 "JAVAC=javac -source 1.7 -target 1.7" + cd ngs-java && make -j18 "JAVAC=javac -source 1.7 -target 1.7" make[2]: Entering directory '/build/ngs-sdk-2.9.3/ngs-java' make[3]: Entering directory '/build/ngs-sdk-2.9.3/ngs-java' mkdir -p /build/ngs-sdk-2.9.3/ngs-java/i386-linux-gnu/ngs-java/jar @@ -13867,8 +14033,8 @@ make -C ngs-sdk/test make[2]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/test' make[3]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/test/test_engine' -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/test/test_engine -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/test/test_engine -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/test/test_engine -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, @@ -15320,12 +15486,12 @@ test_engine.cpp:48:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] ngs::ReadCollection NGS::openReadCollection ( const String & spec ) throw ( ErrorMsg ) ^~~~~ -g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libtest_engine.so /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp +g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libtest_engine.so /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/test/test_engine' make[3]: Entering directory '/build/ngs-sdk-2.9.3/ngs-sdk/test/ngs-test' -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/bin -mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/test/ngs-test -g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/test/ngs-test -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/i386 -MD +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/bin +mkdir -p /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test +g++ -c -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.9.3/ngs-sdk/test/ngs-test -I/build/ngs-sdk-2.9.3/ngs-sdk -I/build/ngs-sdk-2.9.3/ngs-sdk/ngs/unix/x86_64 -MD In file included from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Fragment.hpp:35, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/FragmentIterator.hpp:31, from /build/ngs-sdk-2.9.3/ngs-sdk/ngs/Read.hpp:31, @@ -16774,7 +16940,7 @@ /build/ngs-sdk-2.9.3/ngs-sdk/test/test_engine/test_engine.hpp:45:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static ReadCollection openReadCollection ( const String & spec ) throw ( ErrorMsg ); ^~~~~ -g++ -DNDEBUG -O3 -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/bin/test-ngs /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp +g++ -DNDEBUG -O3 -o /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/bin/test-ngs /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib -L/build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/test/ngs-test' make[2]: Leaving directory '/build/ngs-sdk-2.9.3/ngs-sdk/test' # Tests of Java binding disabled because need external lib ncbi-vdb, @@ -16802,9 +16968,9 @@ set -e install -d -m 755 debian/libngs-sdk-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libngs-sdk2/usr/lib/i386-linux-gnu -mv ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/i386-linux-gnu -mv /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/i386-linux-gnu -mv /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/i386/rel/lib/libngs-sdk.so.2.9.3 debian/libngs-sdk2/usr/lib/i386-linux-gnu +mv ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/i386-linux-gnu +mv /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/i386-linux-gnu +mv /build/ngs-sdk-2.9.3/ngs-sdk/i386-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2.9.3 debian/libngs-sdk2/usr/lib/i386-linux-gnu PKGDEV=libngs-sdk-dev PKGSHL=libngs-sdk2 install -d -m 755 debian/libngs-sdk-dev/usr/lib/i386-linux-gnu @@ -16828,30 +16994,30 @@ creating build creating build/lib creating build/lib/ngs -copying ngs/Statistics.py -> build/lib/ngs -copying ngs/Pileup.py -> build/lib/ngs -copying ngs/AlignmentIterator.py -> build/lib/ngs -copying ngs/FragmentIterator.py -> build/lib/ngs -copying ngs/ReferenceSequence.py -> build/lib/ngs -copying ngs/Reference.py -> build/lib/ngs -copying ngs/ReadIterator.py -> build/lib/ngs -copying ngs/Fragment.py -> build/lib/ngs -copying ngs/ReferenceIterator.py -> build/lib/ngs -copying ngs/LibChecker.py -> build/lib/ngs -copying ngs/String.py -> build/lib/ngs -copying ngs/ReadGroupIterator.py -> build/lib/ngs -copying ngs/__init__.py -> build/lib/ngs -copying ngs/ReadGroup.py -> build/lib/ngs copying ngs/Refcount.py -> build/lib/ngs +copying ngs/Fragment.py -> build/lib/ngs +copying ngs/Alignment.py -> build/lib/ngs copying ngs/PileupEvent.py -> build/lib/ngs -copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/ReadCollection.py -> build/lib/ngs -copying ngs/Read.py -> build/lib/ngs +copying ngs/String.py -> build/lib/ngs copying ngs/Package.py -> build/lib/ngs -copying ngs/PileupEventIterator.py -> build/lib/ngs -copying ngs/Alignment.py -> build/lib/ngs -copying ngs/LibManager.py -> build/lib/ngs +copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/PileupIterator.py -> build/lib/ngs +copying ngs/LibChecker.py -> build/lib/ngs +copying ngs/ReadGroup.py -> build/lib/ngs +copying ngs/LibManager.py -> build/lib/ngs +copying ngs/Reference.py -> build/lib/ngs +copying ngs/__init__.py -> build/lib/ngs +copying ngs/Read.py -> build/lib/ngs +copying ngs/Statistics.py -> build/lib/ngs +copying ngs/ReadGroupIterator.py -> build/lib/ngs +copying ngs/ReferenceIterator.py -> build/lib/ngs +copying ngs/ReadIterator.py -> build/lib/ngs +copying ngs/ReferenceSequence.py -> build/lib/ngs +copying ngs/Pileup.py -> build/lib/ngs +copying ngs/PileupEventIterator.py -> build/lib/ngs +copying ngs/FragmentIterator.py -> build/lib/ngs +copying ngs/AlignmentIterator.py -> build/lib/ngs running install_lib creating ../debian/python3-ngs creating ../debian/python3-ngs/usr @@ -16859,54 +17025,54 @@ creating ../debian/python3-ngs/usr/lib/python3 creating ../debian/python3-ngs/usr/lib/python3/dist-packages creating ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Refcount.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEvent.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-37.pyc +copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs +copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Refcount.py to Refcount.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-37.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-37.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-37.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-37.pyc -byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-37.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-37.pyc +byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-37.pyc running install_egg_info Writing ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs-1.0.egg-info /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'include_package_data' @@ -16922,32 +17088,32 @@ running install running build running build_py -creating build/lib.linux-i686-2.7 -creating build/lib.linux-i686-2.7/ngs -copying ngs/Statistics.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Pileup.py -> build/lib.linux-i686-2.7/ngs -copying ngs/AlignmentIterator.py -> build/lib.linux-i686-2.7/ngs -copying ngs/FragmentIterator.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ReferenceSequence.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Reference.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ReadIterator.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Fragment.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ReferenceIterator.py -> build/lib.linux-i686-2.7/ngs -copying ngs/LibChecker.py -> build/lib.linux-i686-2.7/ngs -copying ngs/String.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ReadGroupIterator.py -> build/lib.linux-i686-2.7/ngs -copying ngs/__init__.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ReadGroup.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Refcount.py -> build/lib.linux-i686-2.7/ngs -copying ngs/PileupEvent.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ErrorMsg.py -> build/lib.linux-i686-2.7/ngs -copying ngs/ReadCollection.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Read.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Package.py -> build/lib.linux-i686-2.7/ngs -copying ngs/PileupEventIterator.py -> build/lib.linux-i686-2.7/ngs -copying ngs/Alignment.py -> build/lib.linux-i686-2.7/ngs -copying ngs/LibManager.py -> build/lib.linux-i686-2.7/ngs -copying ngs/PileupIterator.py -> build/lib.linux-i686-2.7/ngs +creating build/lib.linux-x86_64-2.7 +creating build/lib.linux-x86_64-2.7/ngs +copying ngs/Refcount.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Fragment.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Alignment.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/PileupEvent.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ReadCollection.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/String.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Package.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ErrorMsg.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/PileupIterator.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/LibChecker.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ReadGroup.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/LibManager.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Reference.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/__init__.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Read.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Statistics.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ReadGroupIterator.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ReferenceIterator.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ReadIterator.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/ReferenceSequence.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/Pileup.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/PileupEventIterator.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/FragmentIterator.py -> build/lib.linux-x86_64-2.7/ngs +copying ngs/AlignmentIterator.py -> build/lib.linux-x86_64-2.7/ngs running install_lib creating ../debian/python-ngs creating ../debian/python-ngs/usr @@ -16955,54 +17121,54 @@ creating ../debian/python-ngs/usr/lib/python2.7 creating ../debian/python-ngs/usr/lib/python2.7/dist-packages creating ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Statistics.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Pileup.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/AlignmentIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/FragmentIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ReferenceSequence.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Reference.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ReadIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Fragment.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ReferenceIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/LibChecker.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/String.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ReadGroupIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/__init__.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ReadGroup.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Refcount.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/PileupEvent.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ErrorMsg.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/ReadCollection.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Read.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Package.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/PileupEventIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/Alignment.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/LibManager.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -copying build/lib.linux-i686-2.7/ngs/PileupIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Statistics.py to Statistics.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Pileup.py to Pileup.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/FragmentIterator.py to FragmentIterator.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Reference.py to Reference.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadIterator.py to ReadIterator.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Fragment.py to Fragment.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/LibChecker.py to LibChecker.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/String.py to String.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/__init__.py to __init__.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadGroup.py to ReadGroup.pyc +copying build/lib.linux-x86_64-2.7/ngs/Refcount.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Fragment.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Alignment.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/PileupEvent.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ReadCollection.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/String.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Package.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ErrorMsg.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/PileupIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/LibChecker.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ReadGroup.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/LibManager.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Reference.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/__init__.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Read.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Statistics.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ReadGroupIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ReferenceIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ReadIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/ReferenceSequence.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/Pileup.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/PileupEventIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/FragmentIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs +copying build/lib.linux-x86_64-2.7/ngs/AlignmentIterator.py -> ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Refcount.py to Refcount.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Fragment.py to Fragment.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Alignment.py to Alignment.pyc byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/PileupEvent.py to PileupEvent.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ErrorMsg.py to ErrorMsg.pyc byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadCollection.py to ReadCollection.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Read.py to Read.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/String.py to String.pyc byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Package.py to Package.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Alignment.py to Alignment.pyc -byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/LibManager.py to LibManager.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ErrorMsg.py to ErrorMsg.pyc byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/PileupIterator.py to PileupIterator.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/LibChecker.py to LibChecker.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadGroup.py to ReadGroup.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/LibManager.py to LibManager.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Reference.py to Reference.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/__init__.py to __init__.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Read.py to Read.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Statistics.py to Statistics.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReadIterator.py to ReadIterator.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/Pileup.py to Pileup.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/FragmentIterator.py to FragmentIterator.pyc +byte-compiling ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.pyc running install_egg_info Writing ../debian/python-ngs/usr/lib/python2.7/dist-packages/ngs-1.0.egg-info find debian -name "*.pyc" -delete @@ -17030,29 +17196,31 @@ dh_shlibdeps dh_installdeb dh_gencontrol +dpkg-gencontrol: warning: Depends field of package libngs-sdk-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python-ngs: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-ngs: substitution variable ${python:Versions} unused, but is defined -dpkg-gencontrol: warning: Depends field of package libngs-sdk-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libngs-sdk2' in '../libngs-sdk2_2.9.3-1_i386.deb'. dpkg-deb: building package 'libngs-sdk2-dbgsym' in '../libngs-sdk2-dbgsym_2.9.3-1_i386.deb'. -dpkg-deb: building package 'libngs-java' in '../libngs-java_2.9.3-1_i386.deb'. +dpkg-deb: building package 'libngs-sdk2' in '../libngs-sdk2_2.9.3-1_i386.deb'. dpkg-deb: building package 'libngs-sdk-dev' in '../libngs-sdk-dev_2.9.3-1_i386.deb'. -dpkg-deb: building package 'python3-ngs' in '../python3-ngs_2.9.3-1_i386.deb'. dpkg-deb: building package 'python-ngs' in '../python-ngs_2.9.3-1_i386.deb'. +dpkg-deb: building package 'python3-ngs' in '../python3-ngs_2.9.3-1_i386.deb'. +dpkg-deb: building package 'libngs-java' in '../libngs-java_2.9.3-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ngs-sdk_2.9.3-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/62490/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/62490/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21752 and its subdirectories -I: Current time: Tue May 12 03:09:36 -12 2020 -I: pbuilder-time-stamp: 1589296176 +I: removing directory /srv/workspace/pbuilder/62490 and its subdirectories +I: Current time: Tue Jun 15 11:33:52 +14 2021 +I: pbuilder-time-stamp: 1623706432