Diff of the two buildlogs: -- --- b1/build.log 2020-05-16 20:00:54.367761143 +0000 +++ b2/build.log 2020-05-16 20:11:52.990580798 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jun 18 14:22:26 -12 2021 -I: pbuilder-time-stamp: 1624069346 +I: Current time: Sun May 17 10:00:59 +14 2020 +I: pbuilder-time-stamp: 1589659259 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sat Aug 25 04:59:53 2018 -12 +gpgv: Signature made Sun Aug 26 06:59:53 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,6 +30,172 @@ dpkg-source: info: applying debian_build_cfg I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/22601/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22601/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22601/tmp/hooks/D02_print_environment starting +I: set + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 + IFS=' + ' + INVOCATION_ID=a55982e705a04a28bf420aea40f267c2 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22601 + PS4='+ ' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UVzyMWFSE1/pbuilderrc_FV6t --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UVzyMWFSE1/b2 --logfile b2/build.log mrtrix_0.2.13-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 +I: uname -a + Linux i-capture-the-hostname 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2 (2020-04-29) i686 GNU/Linux +I: ls -l /bin + total 5476 + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 May 17 10:02 sh -> bash + lrwxrwxrwx 1 root root 4 May 15 22:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/22601/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -483,7 +649,7 @@ Get: 399 http://deb.debian.org/debian buster/main i386 libreadline-dev i386 7.0-5 [146 kB] Get: 400 http://deb.debian.org/debian buster/main i386 liboctave-dev i386 4.4.1-5 [764 kB] Get: 401 http://deb.debian.org/debian buster/main i386 matlab-support-dev all 0.0.21 [7348 B] -Fetched 193 MB in 9s (22.0 MB/s) +Fetched 193 MB in 46s (4184 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -2161,7 +2327,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/mrtrix-0.2.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/mrtrix-0.2.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mrtrix dpkg-buildpackage: info: source version 0.2.13-2 dpkg-buildpackage: info: source distribution unstable @@ -2198,13 +2364,13 @@ GTK libs: -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype GTK/GL libs: -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgdk-x11-2.0 -lpangox-1.0 -lX11 -Wl,--export-dynamic -lgmodule-2.0 -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -building targets: bin/read_dicom bin/dicom_filename bin/normalise_tracks bin/csdeconv bin/gen_unit_warp bin/mrconvert bin/dir2amp bin/import_tracks bin/mrstats bin/estimate_response bin/tracks2prob bin/erode bin/cat_tracks bin/streamtrack bin/mradd bin/tensor2FA bin/gendir bin/mrview bin/tensor2vector bin/average bin/threshold bin/dwi2tensor bin/find_SH_peaks bin/dwi2SH bin/cleanup_ANTS_warp bin/median3D bin/track_info bin/mrinfo bin/tensor2ADC bin/select_tracks bin/mrcat bin/mrabs bin/read_ximg bin/sdeconv bin/truncate_tracks bin/gen_ROI bin/gen_WM_mask bin/mrtransform bin/filter_tracks bin/tracks2vtk bin/mrmult bin/disp_profile bin/tensor_metric bin/resample_tracks bin/sample_tracks +building targets: bin/disp_profile bin/tensor2ADC bin/cleanup_ANTS_warp bin/streamtrack bin/gen_unit_warp bin/tracks2prob bin/import_tracks bin/dicom_filename bin/sdeconv bin/truncate_tracks bin/erode bin/cat_tracks bin/mrview bin/gen_WM_mask bin/select_tracks bin/tensor_metric bin/mrmult bin/tensor2FA bin/tensor2vector bin/dwi2tensor bin/dwi2SH bin/filter_tracks bin/find_SH_peaks bin/estimate_response bin/median3D bin/mrinfo bin/mrconvert bin/gendir bin/read_dicom bin/mradd bin/mrtransform bin/tracks2vtk bin/mrstats bin/sample_tracks bin/read_ximg bin/mrabs bin/resample_tracks bin/normalise_tracks bin/average bin/threshold bin/track_info bin/dir2amp bin/csdeconv bin/mrcat bin/gen_ROI compiling TODO list... TODO list contains 164 items -launching 18 threads +launching 10 threads [CC] lib/math/vector.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/vector.cpp -o lib/math/vector.o [CC] src/mrview/sidebar/roi_analysis.o @@ -2216,14 +2382,14 @@ [CC] lib/file/dicom/quick_scan.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/quick_scan.cpp -o lib/file/dicom/quick_scan.o [CC] lib/image/format/list.o -[CC] cmd/streamtrack.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/list.cpp -o lib/image/format/list.o +[CC] cmd/streamtrack.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/streamtrack.cpp -o cmd/streamtrack.o [CC] src/mrview/window.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/window.cpp -o src/mrview/window.o [CC] lib/image/format/xds.o -[CC] src/mrview/pane.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/xds.cpp -o lib/image/format/xds.o +[CC] src/mrview/pane.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/pane.cpp -o src/mrview/pane.o [CC] src/mrview/texture.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/texture.cpp -o src/mrview/texture.o @@ -2238,31 +2404,13 @@ [CC] cmd/tensor2ADC.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2ADC.cpp -o cmd/tensor2ADC.o [CC] cmd/cleanup_ANTS_warp.o -[CC] cmd/mrcat.o g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/cleanup_ANTS_warp.cpp -o cmd/cleanup_ANTS_warp.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrcat.cpp -o cmd/mrcat.o -[CC] lib/file/dicom/study.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/study.cpp -o lib/file/dicom/study.o -[CC] lib/file/dicom/dict.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/dict.cpp -o lib/file/dicom/dict.o -[CC] src/mrview/sidebar/tractography/roi_list.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography/roi_list.cpp -o src/mrview/sidebar/tractography/roi_list.o -[CC] cmd/gen_unit_warp.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_unit_warp.cpp -o cmd/gen_unit_warp.o -[CC] lib/image/axis.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/axis.cpp -o lib/image/axis.o -[CC] lib/image/interp.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/interp.cpp -o lib/image/interp.o -[CC] lib/file/dicom/series.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/series.cpp -o lib/file/dicom/series.o -[CC] cmd/import_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/import_tracks.cpp -o cmd/import_tracks.o -[CC] cmd/sdeconv.o -[CC] cmd/threshold.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/threshold.cpp -o cmd/threshold.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/sdeconv.cpp -o cmd/sdeconv.o -STDERR: [CC] cmd/filter_tracks.o -In file included from cmd/filter_tracks.cpp:24: +STDERR: [CC] src/mrview/sidebar/roi_analysis.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/sidebar/roi_analysis/roi_list.h:31, + from src/mrview/sidebar/roi_analysis.h:33, + from src/mrview/sidebar/roi_analysis.cpp:23: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -2436,12 +2584,12 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/mrview/slice.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/slice.cpp -o src/mrview/slice.o -[CC] src/min_max.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/min_max.cpp -o src/min_max.o -[CC] src/mrview/mode/normal.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/mode/normal.cpp -o src/mrview/mode/normal.o +[CC] cmd/mrcat.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrcat.cpp -o cmd/mrcat.o +[CC] lib/file/dicom/study.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/study.cpp -o lib/file/dicom/study.o +[CC] lib/file/dicom/dict.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/dict.cpp -o lib/file/dicom/dict.o STDERR: [CC] cmd/streamtrack.o In file included from cmd/streamtrack.cpp:51: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': @@ -2617,10 +2765,18 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/image/format/mri.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/mri.cpp -o lib/image/format/mri.o -STDERR: [CC] lib/image/interp.o -In file included from lib/image/interp.cpp:23: +[CC] src/mrview/sidebar/tractography/roi_list.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography/roi_list.cpp -o src/mrview/sidebar/tractography/roi_list.o +[CC] cmd/gen_unit_warp.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_unit_warp.cpp -o cmd/gen_unit_warp.o +[CC] lib/image/axis.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/axis.cpp -o lib/image/axis.o +[CC] lib/image/interp.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/interp.cpp -o lib/image/interp.o +[CC] lib/file/dicom/series.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/series.cpp -o lib/file/dicom/series.o +STDERR: [CC] cmd/filter_tracks.o +In file included from cmd/filter_tracks.cpp:24: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -2794,15 +2950,13 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/dwi/tractography/tracker/base.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/base.cpp -o src/dwi/tractography/tracker/base.o -[CC] cmd/mrtransform.o -STDERR: [CC] src/mrview/sidebar/roi_analysis.o +[CC] cmd/import_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/import_tracks.cpp -o cmd/import_tracks.o +STDERR: [CC] src/mrview/pane.o In file included from src/mrview/image.h:29, from src/mrview/slice.h:30, - from src/mrview/sidebar/roi_analysis/roi_list.h:31, - from src/mrview/sidebar/roi_analysis.h:33, - from src/mrview/sidebar/roi_analysis.cpp:23: + from src/mrview/pane.h:33, + from src/mrview/pane.cpp:23: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -2976,14 +3130,13 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/tracks2vtk.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tracks2vtk.cpp -o cmd/tracks2vtk.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrtransform.cpp -o cmd/mrtransform.o -STDERR: [CC] cmd/gen_unit_warp.o -In file included from src/dwi/tractography/roi.h:28, - from src/dwi/tractography/properties.h:27, - from src/dwi/tractography/file.h:30, - from cmd/gen_unit_warp.cpp:28: +STDERR: [CC] src/mrview/window.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/pane.h:33, + from src/mrview/display_area.h:28, + from src/mrview/window.h:36, + from src/mrview/window.cpp:32: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -3157,17 +3310,19 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/point.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/point.cpp -o lib/point.o -[CC] src/mrview/sidebar/tractography/track_list_item.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography/track_list_item.cpp -o src/mrview/sidebar/tractography/track_list_item.o -[CC] src/mrview/sidebar/orientation_plot.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/orientation_plot.cpp -o src/mrview/sidebar/orientation_plot.o -STDERR: [CC] cmd/import_tracks.o +[CC] cmd/sdeconv.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/sdeconv.cpp -o cmd/sdeconv.o +[CC] cmd/threshold.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/threshold.cpp -o cmd/threshold.o +[CC] src/mrview/slice.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/slice.cpp -o src/mrview/slice.o +[CC] src/min_max.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/min_max.cpp -o src/min_max.o +STDERR: [CC] cmd/gen_unit_warp.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, from src/dwi/tractography/file.h:30, - from cmd/import_tracks.cpp:26: + from cmd/gen_unit_warp.cpp:28: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -3341,10 +3496,6 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/dwi/renderer.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/dwi/renderer.cpp -o src/dwi/renderer.o -[CC] lib/file/dicom/patient.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/patient.cpp -o lib/file/dicom/patient.o STDERR: [CC] src/mrview/sidebar/overlay.o In file included from src/mrview/image.h:29, from src/mrview/slice.h:30, @@ -3523,17 +3674,16 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/estimate_response.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/estimate_response.cpp -o cmd/estimate_response.o -[CC] lib/image/header.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/header.cpp -o lib/image/header.o -[CC] lib/file/dicom/mapper.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/mapper.cpp -o lib/file/dicom/mapper.o -STDERR: [CC] src/mrview/pane.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/pane.cpp:23: +[CC] src/mrview/mode/normal.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/mode/normal.cpp -o src/mrview/mode/normal.o +[CC] lib/image/format/mri.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/mri.cpp -o lib/image/format/mri.o +STDERR: [CC] src/mrview/sidebar/tractography/roi_list.o +In file included from src/dwi/tractography/roi.h:28, + from src/dwi/tractography/properties.h:27, + from src/mrview/sidebar/tractography/track_list_item.h:48, + from src/mrview/sidebar/tractography/roi_list.h:30, + from src/mrview/sidebar/tractography/roi_list.cpp:24: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -3707,15 +3857,10 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/resample_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/resample_tracks.cpp -o cmd/resample_tracks.o -STDERR: [CC] src/mrview/window.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/display_area.h:28, - from src/mrview/window.h:36, - from src/mrview/window.cpp:32: +[CC] src/dwi/tractography/tracker/base.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/base.cpp -o src/dwi/tractography/tracker/base.o +STDERR: [CC] lib/image/interp.o +In file included from lib/image/interp.cpp:23: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -3889,14 +4034,19 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/file/dicom/select_cmdline.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/select_cmdline.cpp -o lib/file/dicom/select_cmdline.o -STDERR: [CC] src/mrview/sidebar/tractography/roi_list.o +[CC] cmd/mrtransform.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrtransform.cpp -o cmd/mrtransform.o +[CC] cmd/tracks2vtk.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tracks2vtk.cpp -o cmd/tracks2vtk.o +[CC] lib/point.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/point.cpp -o lib/point.o +[CC] src/mrview/sidebar/tractography/track_list_item.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography/track_list_item.cpp -o src/mrview/sidebar/tractography/track_list_item.o +STDERR: [CC] cmd/import_tracks.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, - from src/mrview/sidebar/tractography/track_list_item.h:48, - from src/mrview/sidebar/tractography/roi_list.h:30, - from src/mrview/sidebar/tractography/roi_list.cpp:24: + from src/dwi/tractography/file.h:30, + from cmd/import_tracks.cpp:26: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -4070,17 +4220,19 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/image/format/analyse.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/analyse.cpp -o lib/image/format/analyse.o -[CC] cmd/mrabs.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrabs.cpp -o cmd/mrabs.o -[CC] lib/image/mapper.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/mapper.cpp -o lib/image/mapper.o -[CC] lib/app.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/app.cpp -o lib/app.o -STDERR: [CC] src/dwi/tractography/tracker/base.o -In file included from src/dwi/tractography/tracker/base.h:49, - from src/dwi/tractography/tracker/base.cpp:43: +[CC] src/mrview/sidebar/orientation_plot.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/orientation_plot.cpp -o src/mrview/sidebar/orientation_plot.o +[CC] src/dwi/renderer.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/dwi/renderer.cpp -o src/dwi/renderer.o +[CC] lib/file/dicom/patient.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/patient.cpp -o lib/file/dicom/patient.o +[CC] cmd/estimate_response.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/estimate_response.cpp -o cmd/estimate_response.o +STDERR: [CC] src/mrview/slice.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/pane.h:33, + from src/mrview/slice.cpp:27: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -4253,18 +4405,14 @@ lib/image/interp.h:303:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -src/dwi/tractography/tracker/base.cpp: In constructor 'MR::DWI::Tractography::Tracker::Base::Base(MR::Image::Object&, MR::DWI::Tractography::Properties&)': -src/dwi/tractography/tracker/base.cpp:62:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - if (props["step_size"].empty()) props["step_size"] = str (step_size); step_size = to (props["step_size"]); - ^~ -src/dwi/tractography/tracker/base.cpp:62:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - if (props["step_size"].empty()) props["step_size"] = str (step_size); step_size = to (props["step_size"]); - ^~~~~~~~~ -[CC] cmd/erode.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/erode.cpp -o cmd/erode.o -STDERR: [CC] cmd/mrtransform.o -In file included from cmd/mrtransform.cpp:24: +[CC] lib/image/header.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/header.cpp -o lib/image/header.o +STDERR: [CC] src/mrview/mode/normal.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/pane.h:33, + from src/mrview/mode/normal.cpp:25: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -4438,13 +4586,10 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/tracks2prob.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tracks2prob.cpp -o cmd/tracks2prob.o -STDERR: [CC] cmd/tracks2vtk.o -In file included from src/dwi/tractography/roi.h:28, - from src/dwi/tractography/properties.h:27, - from src/dwi/tractography/file.h:30, - from cmd/tracks2vtk.cpp:42: +[CC] lib/file/dicom/mapper.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/mapper.cpp -o lib/file/dicom/mapper.o +STDERR: [CC] cmd/mrtransform.o +In file included from cmd/mrtransform.cpp:24: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -4618,13 +4763,11 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/gen_WM_mask.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_WM_mask.cpp -o cmd/gen_WM_mask.o -STDERR: [CC] src/mrview/sidebar/tractography/track_list_item.o -In file included from src/dwi/tractography/roi.h:28, - from src/dwi/tractography/properties.h:27, - from src/mrview/sidebar/tractography/track_list_item.h:48, - from src/mrview/sidebar/tractography/track_list_item.cpp:34: +[CC] cmd/resample_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/resample_tracks.cpp -o cmd/resample_tracks.o +STDERR: [CC] src/dwi/tractography/tracker/base.o +In file included from src/dwi/tractography/tracker/base.h:49, + from src/dwi/tractography/tracker/base.cpp:43: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -4797,14 +4940,21 @@ lib/image/interp.h:303:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ +src/dwi/tractography/tracker/base.cpp: In constructor 'MR::DWI::Tractography::Tracker::Base::Base(MR::Image::Object&, MR::DWI::Tractography::Properties&)': +src/dwi/tractography/tracker/base.cpp:62:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + if (props["step_size"].empty()) props["step_size"] = str (step_size); step_size = to (props["step_size"]); + ^~ +src/dwi/tractography/tracker/base.cpp:62:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + if (props["step_size"].empty()) props["step_size"] = str (step_size); step_size = to (props["step_size"]); + ^~~~~~~~~ -[CC] lib/image/object.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/object.cpp -o lib/image/object.o -STDERR: [CC] src/mrview/slice.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/slice.cpp:27: +[CC] lib/file/dicom/select_cmdline.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/select_cmdline.cpp -o lib/file/dicom/select_cmdline.o +STDERR: [CC] cmd/tracks2vtk.o +In file included from src/dwi/tractography/roi.h:28, + from src/dwi/tractography/properties.h:27, + from src/dwi/tractography/file.h:30, + from cmd/tracks2vtk.cpp:42: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -4978,13 +5128,13 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/read_dicom.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/read_dicom.cpp -o cmd/read_dicom.o -STDERR: [CC] src/mrview/mode/normal.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/mode/normal.cpp:25: +[CC] lib/image/format/analyse.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/analyse.cpp -o lib/image/format/analyse.o +STDERR: [CC] src/mrview/sidebar/tractography/track_list_item.o +In file included from src/dwi/tractography/roi.h:28, + from src/dwi/tractography/properties.h:27, + from src/mrview/sidebar/tractography/track_list_item.h:48, + from src/mrview/sidebar/tractography/track_list_item.cpp:34: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -5158,36 +5308,25 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/mrview.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc cmd/mrview.cpp -o cmd/mrview.o -[CC] src/mrview/dialog/error.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/error.cpp -o src/mrview/dialog/error.o -[CC] cmd/tensor_metric.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor_metric.cpp -o cmd/tensor_metric.o +[CC] cmd/mrabs.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrabs.cpp -o cmd/mrabs.o +[CC] lib/image/mapper.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/mapper.cpp -o lib/image/mapper.o +[CC] lib/app.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/app.cpp -o lib/app.o +[CC] cmd/erode.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/erode.cpp -o cmd/erode.o STDERR: [CC] lib/file/dicom/select_cmdline.o lib/file/dicom/select_cmdline.cpp:118:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf (stderr, " %2u - %4"G_GSIZE_FORMAT" %s images %8s %s (%s) [%u]\n", ^ -[CC] lib/image/format/nifti1.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/nifti1.cpp -o lib/image/format/nifti1.o -[CC] cmd/gendir.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gendir.cpp -o cmd/gendir.o -[CC] cmd/select_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/select_tracks.cpp -o cmd/select_tracks.o -STDERR: [CC] lib/image/mapper.o -lib/image/mapper.cpp: In destructor 'MR::Image::Mapper::~Mapper()': -lib/image/mapper.cpp:60:76: warning: throw will always call terminate() [-Wterminate] - throw Exception ("Mapper destroyed before committing data to file!"); - ^ -lib/image/mapper.cpp:60:76: note: in C++11 destructors default to noexcept - -[CC] cmd/median3D.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/median3D.cpp -o cmd/median3D.o -[CC] cmd/dwi2SH.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dwi2SH.cpp -o cmd/dwi2SH.o -[CC] cmd/disp_profile.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc cmd/disp_profile.cpp -o cmd/disp_profile.o +[CC] cmd/tracks2prob.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tracks2prob.cpp -o cmd/tracks2prob.o +[CC] cmd/gen_WM_mask.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_WM_mask.cpp -o cmd/gen_WM_mask.o +[CC] lib/image/object.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/object.cpp -o lib/image/object.o STDERR: [CC] cmd/resample_tracks.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, @@ -5366,22 +5505,12 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/file/config.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/config.cpp -o lib/file/config.o -[CC] src/mrview/sidebar/main.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/main.cpp -o src/mrview/sidebar/main.o -[CC] lib/image/name_parser.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/name_parser.cpp -o lib/image/name_parser.o -[CC] src/mrview/dialog/opengl.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/opengl.cpp -o src/mrview/dialog/opengl.o -[CC] src/mrview/sidebar/screen_capture.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/screen_capture.cpp -o src/mrview/sidebar/screen_capture.o -[CC] src/dwi/tractography/file.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/file.cpp -o src/dwi/tractography/file.o -[CC] lib/file/dicom/tree.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/tree.cpp -o lib/file/dicom/tree.o -[CC] cmd/mrstats.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrstats.cpp -o cmd/mrstats.o +[CC] cmd/read_dicom.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/read_dicom.cpp -o cmd/read_dicom.o +[CC] cmd/mrview.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc cmd/mrview.cpp -o cmd/mrview.o +[CC] src/mrview/dialog/error.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/error.cpp -o src/mrview/dialog/error.o STDERR: [CC] src/mrview/sidebar/orientation_plot.o In file included from src/mrview/image.h:29, from src/mrview/slice.h:30, @@ -5562,15 +5691,34 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/image/fft.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/fft.cpp -o lib/image/fft.o -[CC] cmd/mrmult.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrmult.cpp -o cmd/mrmult.o -STDERR: [CC] cmd/tracks2prob.o -In file included from src/dwi/tractography/roi.h:28, - from src/dwi/tractography/properties.h:27, - from src/dwi/tractography/file.h:30, - from cmd/tracks2prob.cpp:43: +[CC] cmd/tensor_metric.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor_metric.cpp -o cmd/tensor_metric.o +[CC] lib/image/format/nifti1.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/nifti1.cpp -o lib/image/format/nifti1.o +[CC] cmd/gendir.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gendir.cpp -o cmd/gendir.o +[CC] cmd/select_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/select_tracks.cpp -o cmd/select_tracks.o +[CC] cmd/median3D.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/median3D.cpp -o cmd/median3D.o +STDERR: [CC] lib/image/mapper.o +lib/image/mapper.cpp: In destructor 'MR::Image::Mapper::~Mapper()': +lib/image/mapper.cpp:60:76: warning: throw will always call terminate() [-Wterminate] + throw Exception ("Mapper destroyed before committing data to file!"); + ^ +lib/image/mapper.cpp:60:76: note: in C++11 destructors default to noexcept + +[CC] cmd/dwi2SH.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dwi2SH.cpp -o cmd/dwi2SH.o +[CC] cmd/disp_profile.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc cmd/disp_profile.cpp -o cmd/disp_profile.o +STDERR: [CC] cmd/mrview.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/pane.h:33, + from src/mrview/display_area.h:28, + from src/mrview/window.h:36, + from cmd/mrview.cpp:28: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -5744,15 +5892,15 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/mrview/sidebar/roi_analysis/roi_list.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/roi_analysis/roi_list.cpp -o src/mrview/sidebar/roi_analysis/roi_list.o -STDERR: [CC] cmd/mrview.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/display_area.h:28, - from src/mrview/window.h:36, - from cmd/mrview.cpp:28: +[CC] lib/file/config.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/config.cpp -o lib/file/config.o +[CC] src/mrview/sidebar/main.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/main.cpp -o src/mrview/sidebar/main.o +STDERR: [CC] cmd/tracks2prob.o +In file included from src/dwi/tractography/roi.h:28, + from src/dwi/tractography/properties.h:27, + from src/dwi/tractography/file.h:30, + from cmd/tracks2prob.cpp:43: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -5926,18 +6074,20 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/file/mmap.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/mmap.cpp -o lib/file/mmap.o -[CC] src/dwi/SH.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/SH.cpp -o src/dwi/SH.o -[CC] src/dwi/sdeconv/constrained.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/sdeconv/constrained.cpp -o src/dwi/sdeconv/constrained.o -[CC] cmd/cat_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/cat_tracks.cpp -o cmd/cat_tracks.o -[CC] lib/math/matrix.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/matrix.cpp -o lib/math/matrix.o -[CC] src/dwi/tractography/mds.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/mds.cpp -o src/dwi/tractography/mds.o +[CC] lib/image/name_parser.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/name_parser.cpp -o lib/image/name_parser.o +[CC] src/mrview/dialog/opengl.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/opengl.cpp -o src/mrview/dialog/opengl.o +[CC] src/mrview/sidebar/screen_capture.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/screen_capture.cpp -o src/mrview/sidebar/screen_capture.o +[CC] src/dwi/tractography/file.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/file.cpp -o src/dwi/tractography/file.o +[CC] lib/file/dicom/tree.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/tree.cpp -o lib/file/dicom/tree.o +[CC] cmd/mrstats.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrstats.cpp -o cmd/mrstats.o +[CC] lib/image/fft.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/fft.cpp -o lib/image/fft.o STDERR: [CC] cmd/select_tracks.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, @@ -6116,19 +6266,15 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/image/format/base.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/base.cpp -o lib/image/format/base.o -[CC] cmd/normalise_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/normalise_tracks.cpp -o cmd/normalise_tracks.o -[CC] cmd/mrinfo.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrinfo.cpp -o cmd/mrinfo.o -[CC] cmd/find_SH_peaks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/find_SH_peaks.cpp -o cmd/find_SH_peaks.o -STDERR: [CC] src/dwi/tractography/file.o -In file included from src/dwi/tractography/roi.h:28, - from src/dwi/tractography/properties.h:27, - from src/dwi/tractography/file.h:30, - from src/dwi/tractography/file.cpp:29: +[CC] cmd/mrmult.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrmult.cpp -o cmd/mrmult.o +[CC] src/mrview/sidebar/roi_analysis/roi_list.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/roi_analysis/roi_list.cpp -o src/mrview/sidebar/roi_analysis/roi_list.o +STDERR: [CC] src/mrview/dialog/opengl.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/pane.h:33, + from src/mrview/dialog/opengl.cpp:27: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -6302,27 +6448,19 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/average.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/average.cpp -o cmd/average.o -[CC] src/mrview/dialog/properties.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/properties.cpp -o src/mrview/dialog/properties.o -[CC] lib/file/key_value.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/key_value.cpp -o lib/file/key_value.o -[CC] lib/math/linalg.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/linalg.cpp -o lib/math/linalg.o -STDERR: [CC] lib/file/mmap.o -lib/file/mmap.cpp: In member function 'void MR::File::MMap::init(const String&, gsize, const gchar*)': -lib/file/mmap.cpp:228:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] - for (int n = 0; n < 6; n++) - ^~~ -lib/file/mmap.cpp:230:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' - fid = g_open (base->filename.c_str(), O_CREAT | O_RDWR | O_EXCL, 0644); - ^~~ - -[CC] cmd/mrconvert.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrconvert.cpp -o cmd/mrconvert.o -STDERR: [CC] src/dwi/SH.o -In file included from src/dwi/SH.cpp:40: +[CC] lib/file/mmap.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/mmap.cpp -o lib/file/mmap.o +[CC] src/dwi/SH.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/SH.cpp -o src/dwi/SH.o +[CC] src/dwi/sdeconv/constrained.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/sdeconv/constrained.cpp -o src/dwi/sdeconv/constrained.o +STDERR: [CC] src/mrview/sidebar/main.o +In file included from src/dwi/tractography/roi.h:28, + from src/dwi/tractography/properties.h:27, + from src/mrview/sidebar/tractography/track_list_item.h:48, + from src/mrview/sidebar/tractography/track_list.h:37, + from src/mrview/sidebar/tractography.h:34, + from src/mrview/sidebar/main.cpp:29: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -6496,17 +6634,15 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/dwi/gradient.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/gradient.cpp -o src/dwi/gradient.o -[CC] lib/mrtrix.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/mrtrix.cpp -o lib/mrtrix.o -STDERR: [CC] src/mrview/sidebar/main.o +[CC] cmd/cat_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/cat_tracks.cpp -o cmd/cat_tracks.o +[CC] lib/math/matrix.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/matrix.cpp -o lib/math/matrix.o +STDERR: [CC] src/dwi/tractography/file.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, - from src/mrview/sidebar/tractography/track_list_item.h:48, - from src/mrview/sidebar/tractography/track_list.h:37, - from src/mrview/sidebar/tractography.h:34, - from src/mrview/sidebar/main.cpp:29: + from src/dwi/tractography/file.h:30, + from src/dwi/tractography/file.cpp:29: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -6680,15 +6816,17 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/tensor2vector.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2vector.cpp -o cmd/tensor2vector.o -[CC] lib/file/dicom/image.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/image.cpp -o lib/file/dicom/image.o -STDERR: [CC] src/mrview/dialog/opengl.o +[CC] src/dwi/tractography/mds.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/mds.cpp -o src/dwi/tractography/mds.o +[CC] lib/image/format/base.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/base.cpp -o lib/image/format/base.o +STDERR: [CC] src/mrview/sidebar/screen_capture.o In file included from src/mrview/image.h:29, from src/mrview/slice.h:30, from src/mrview/pane.h:33, - from src/mrview/dialog/opengl.cpp:27: + from src/mrview/display_area.h:28, + from src/mrview/window.h:36, + from src/mrview/sidebar/screen_capture.cpp:35: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -6862,14 +7000,25 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/dwi2tensor.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dwi2tensor.cpp -o cmd/dwi2tensor.o -[CC] cmd/gen_ROI.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_ROI.cpp -o cmd/gen_ROI.o -[CC] src/mrview/sidebar/tractography.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography.cpp -o src/mrview/sidebar/tractography.o -STDERR: [CC] cmd/cat_tracks.o -In file included from cmd/cat_tracks.cpp:24: +[CC] cmd/normalise_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/normalise_tracks.cpp -o cmd/normalise_tracks.o +[CC] cmd/mrinfo.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrinfo.cpp -o cmd/mrinfo.o +[CC] cmd/find_SH_peaks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/find_SH_peaks.cpp -o cmd/find_SH_peaks.o +STDERR: [CC] lib/file/mmap.o +lib/file/mmap.cpp: In member function 'void MR::File::MMap::init(const String&, gsize, const gchar*)': +lib/file/mmap.cpp:228:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] + for (int n = 0; n < 6; n++) + ^~~ +lib/file/mmap.cpp:230:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' + fid = g_open (base->filename.c_str(), O_CREAT | O_RDWR | O_EXCL, 0644); + ^~~ + +[CC] cmd/average.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/average.cpp -o cmd/average.o +STDERR: [CC] src/dwi/SH.o +In file included from src/dwi/SH.cpp:40: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -7043,13 +7192,20 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/mrview/dialog/progress.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/progress.cpp -o src/mrview/dialog/progress.o -STDERR: [CC] src/dwi/tractography/mds.o -In file included from src/dwi/tractography/roi.h:28, - from src/dwi/tractography/properties.h:27, - from src/dwi/tractography/mds.h:31, - from src/dwi/tractography/mds.cpp:23: +[CC] src/mrview/dialog/properties.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/properties.cpp -o src/mrview/dialog/properties.o +[CC] lib/file/key_value.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/key_value.cpp -o lib/file/key_value.o +[CC] lib/math/linalg.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/math/linalg.cpp -o lib/math/linalg.o +[CC] cmd/mrconvert.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mrconvert.cpp -o cmd/mrconvert.o +[CC] src/dwi/gradient.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/gradient.cpp -o src/dwi/gradient.o +[CC] lib/mrtrix.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/mrtrix.cpp -o lib/mrtrix.o +STDERR: [CC] cmd/cat_tracks.o +In file included from cmd/cat_tracks.cpp:24: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -7223,8 +7379,8 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/dicom_filename.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dicom_filename.cpp -o cmd/dicom_filename.o +[CC] cmd/tensor2vector.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2vector.cpp -o cmd/tensor2vector.o STDERR: [CC] cmd/normalise_tracks.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, @@ -7403,15 +7559,13 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] cmd/tensor2FA.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2FA.cpp -o cmd/tensor2FA.o -STDERR: [CC] src/mrview/sidebar/screen_capture.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/display_area.h:28, - from src/mrview/window.h:36, - from src/mrview/sidebar/screen_capture.cpp:35: +[CC] lib/file/dicom/image.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/image.cpp -o lib/file/dicom/image.o +STDERR: [CC] src/dwi/tractography/mds.o +In file included from src/dwi/tractography/roi.h:28, + from src/dwi/tractography/properties.h:27, + from src/dwi/tractography/mds.h:31, + from src/dwi/tractography/mds.cpp:23: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -7585,35 +7739,17 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/mrview/sidebar/tractography/track_list.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography/track_list.cpp -o src/mrview/sidebar/tractography/track_list.o -[CC] src/mrview/display_area.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/display_area.cpp -o src/mrview/display_area.o -[CC] cmd/track_info.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/track_info.cpp -o cmd/track_info.o -[CC] lib/file/dicom/element.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/element.cpp -o lib/file/dicom/element.o -[CC] cmd/truncate_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/truncate_tracks.cpp -o cmd/truncate_tracks.o -[CC] cmd/csdeconv.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/csdeconv.cpp -o cmd/csdeconv.o -[CC] lib/image/format/dicom.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/dicom.cpp -o lib/image/format/dicom.o -[CC] cmd/mradd.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mradd.cpp -o cmd/mradd.o -[CC] lib/image/format/mrtrix.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/mrtrix.cpp -o lib/image/format/mrtrix.o -[CC] cmd/sample_tracks.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/sample_tracks.cpp -o cmd/sample_tracks.o -[CC] src/dwi/tractography/tracker/dt_stream.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/dt_stream.cpp -o src/dwi/tractography/tracker/dt_stream.o -[CC] src/dialog/file.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/dialog/file.cpp -o src/dialog/file.o -STDERR: [CC] src/mrview/sidebar/roi_analysis/roi_list.o +[CC] cmd/dwi2tensor.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dwi2tensor.cpp -o cmd/dwi2tensor.o +[CC] cmd/gen_ROI.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/gen_ROI.cpp -o cmd/gen_ROI.o +[CC] src/mrview/sidebar/tractography.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography.cpp -o src/mrview/sidebar/tractography.o +STDERR: [CC] src/mrview/dialog/properties.o In file included from src/mrview/image.h:29, from src/mrview/slice.h:30, - from src/mrview/sidebar/roi_analysis/roi_list.h:31, - from src/mrview/sidebar/roi_analysis/roi_list.cpp:29: + from src/mrview/pane.h:33, + from src/mrview/dialog/properties.cpp:27: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -7787,17 +7923,23 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/icon.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/icon.cpp -o src/icon.o -[CC] src/histogram.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/histogram.cpp -o src/histogram.o -[CC] src/dwi/render_frame.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/dwi/render_frame.cpp -o src/dwi/render_frame.o -STDERR: [CC] src/mrview/dialog/properties.o +[CC] src/mrview/dialog/progress.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/dialog/progress.cpp -o src/mrview/dialog/progress.o +[CC] cmd/dicom_filename.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/dicom_filename.cpp -o cmd/dicom_filename.o +[CC] cmd/tensor2FA.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/tensor2FA.cpp -o cmd/tensor2FA.o +[CC] src/mrview/sidebar/tractography/track_list.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/sidebar/tractography/track_list.cpp -o src/mrview/sidebar/tractography/track_list.o +[CC] src/mrview/display_area.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/display_area.cpp -o src/mrview/display_area.o +[CC] cmd/track_info.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/track_info.cpp -o cmd/track_info.o +STDERR: [CC] src/mrview/sidebar/roi_analysis/roi_list.o In file included from src/mrview/image.h:29, from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/dialog/properties.cpp:27: + from src/mrview/sidebar/roi_analysis/roi_list.h:31, + from src/mrview/sidebar/roi_analysis/roi_list.cpp:29: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -7971,15 +8113,25 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/dwi/tractography/tracker/sd_prob.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/sd_prob.cpp -o src/dwi/tractography/tracker/sd_prob.o -[CC] src/dwi/tractography/tracker/sd_stream.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/sd_stream.cpp -o src/dwi/tractography/tracker/sd_stream.o -STDERR: [CC] cmd/truncate_tracks.o +[CC] lib/file/dicom/element.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/file/dicom/element.cpp -o lib/file/dicom/element.o +[CC] cmd/truncate_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/truncate_tracks.cpp -o cmd/truncate_tracks.o +[CC] cmd/csdeconv.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/csdeconv.cpp -o cmd/csdeconv.o +[CC] lib/image/format/dicom.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/dicom.cpp -o lib/image/format/dicom.o +[CC] cmd/mradd.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/mradd.cpp -o cmd/mradd.o +[CC] lib/image/format/mrtrix.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/image/format/mrtrix.cpp -o lib/image/format/mrtrix.o +STDERR: [CC] src/mrview/sidebar/tractography.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, - from src/dwi/tractography/file.h:30, - from cmd/truncate_tracks.cpp:29: + from src/mrview/sidebar/tractography/track_list_item.h:48, + from src/mrview/sidebar/tractography/track_list.h:37, + from src/mrview/sidebar/tractography.h:34, + from src/mrview/sidebar/tractography.cpp:26: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -8153,13 +8305,13 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] lib/data_type.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/data_type.cpp -o lib/data_type.o -STDERR: [CC] cmd/track_info.o +[CC] cmd/sample_tracks.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc cmd/sample_tracks.cpp -o cmd/sample_tracks.o +STDERR: [CC] cmd/truncate_tracks.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, from src/dwi/tractography/file.h:30, - from cmd/track_info.cpp:27: + from cmd/truncate_tracks.cpp:29: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -8333,12 +8485,14 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[CC] src/mrview/image.o -g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/image.cpp -o src/mrview/image.o -STDERR: [CC] src/dwi/tractography/tracker/dt_stream.o -In file included from src/dwi/tractography/tracker/base.h:49, - from src/dwi/tractography/tracker/dt_stream.h:33, - from src/dwi/tractography/tracker/dt_stream.cpp:31: +[CC] src/dwi/tractography/tracker/dt_stream.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/dt_stream.cpp -o src/dwi/tractography/tracker/dt_stream.o +STDERR: [CC] src/mrview/display_area.o +In file included from src/mrview/image.h:29, + from src/mrview/slice.h:30, + from src/mrview/pane.h:33, + from src/mrview/display_area.h:28, + from src/mrview/display_area.cpp:23: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -8512,13 +8666,15 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -STDERR: [CC] src/mrview/sidebar/tractography.o +[CC] src/dialog/file.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/dialog/file.cpp -o src/dialog/file.o +[CC] src/icon.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/icon.cpp -o src/icon.o +STDERR: [CC] cmd/track_info.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, - from src/mrview/sidebar/tractography/track_list_item.h:48, - from src/mrview/sidebar/tractography/track_list.h:37, - from src/mrview/sidebar/tractography.h:34, - from src/mrview/sidebar/tractography.cpp:26: + from src/dwi/tractography/file.h:30, + from cmd/track_info.cpp:27: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -8692,6 +8848,16 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ +[CC] src/histogram.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/histogram.cpp -o src/histogram.o +[CC] src/dwi/render_frame.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/dwi/render_frame.cpp -o src/dwi/render_frame.o +[CC] src/dwi/tractography/tracker/sd_prob.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/sd_prob.cpp -o src/dwi/tractography/tracker/sd_prob.o +[CC] src/dwi/tractography/tracker/sd_stream.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc src/dwi/tractography/tracker/sd_stream.cpp -o src/dwi/tractography/tracker/sd_stream.o +[CC] lib/data_type.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Ilib -Isrc lib/data_type.cpp -o lib/data_type.o STDERR: [CC] cmd/sample_tracks.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, @@ -8870,12 +9036,14 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -STDERR: [CC] src/mrview/display_area.o -In file included from src/mrview/image.h:29, - from src/mrview/slice.h:30, - from src/mrview/pane.h:33, - from src/mrview/display_area.h:28, - from src/mrview/display_area.cpp:23: +[CC] src/mrview/image.o +g++ -c -Wall -pedantic -fPIC -fno-strict-aliasing -DGL_GLEXT_PROTOTYPES -DUSE_TR1 -g -pthread -I/usr/include/gtkmm-2.4 -I/usr/lib/i386-linux-gnu/gtkmm-2.4/include -I/usr/include/atkmm-1.6 -I/usr/include/gtk-unix-print-2.0 -I/usr/include/gtk-2.0 -I/usr/include/gdkmm-2.4 -I/usr/lib/i386-linux-gnu/gdkmm-2.4/include -I/usr/include/giomm-2.4 -I/usr/lib/i386-linux-gnu/giomm-2.4/include -I/usr/include/pangomm-1.4 -I/usr/lib/i386-linux-gnu/pangomm-1.4/include -I/usr/include/glibmm-2.4 -I/usr/lib/i386-linux-gnu/glibmm-2.4/include -I/usr/include/cairomm-1.0 -I/usr/lib/i386-linux-gnu/cairomm-1.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/i386-linux-gnu/sigc++-2.0/include -I/usr/include/gtkglext-1.0 -I/usr/lib/i386-linux-gnu/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/i386-linux-gnu/gtk-2.0/include -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -Ilib -Isrc src/mrview/image.cpp -o src/mrview/image.o +[LD] lib/libmrtrix-0_2_12.so +g++ -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now lib/math/vector.o lib/math/matrix.o lib/file/dicom/study.o lib/file/dicom/quick_scan.o lib/image/format/list.o lib/file/dicom/image.o lib/file/config.o lib/point.o lib/image/name_parser.o lib/image/format/xds.o lib/data_type.o lib/args.o lib/file/dicom/patient.o lib/file/dicom/tree.o lib/image/fft.o lib/image/header.o lib/file/dicom/mapper.o lib/file/dicom/select_cmdline.o lib/math/linalg.o lib/image/format/analyse.o lib/file/dicom/element.o lib/file/mmap.o lib/image/format/nifti1.o lib/file/dicom/dict.o lib/image/format/mrtrix.o lib/image/format/base.o lib/image/axis.o lib/image/interp.o lib/image/mapper.o lib/file/dicom/series.o lib/mrtrix.o lib/image/format/mri.o lib/image/object.o lib/image/format/dicom.o lib/app.o lib/file/key_value.o -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lgsl -lgslcblas -lz -o lib/libmrtrix-0_2_12.so +STDERR: [CC] src/dwi/tractography/tracker/dt_stream.o +In file included from src/dwi/tractography/tracker/base.h:49, + from src/dwi/tractography/tracker/dt_stream.h:33, + from src/dwi/tractography/tracker/dt_stream.cpp:31: lib/image/interp.h: In member function 'float MR::Image::Interp::re() const': lib/image/interp.h:238:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (faaa) val = faaa * image.re (os); os += stride[2]; @@ -9049,8 +9217,6 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[LD] lib/libmrtrix-0_2_12.so -g++ -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now lib/math/vector.o lib/image/mapper.o lib/file/dicom/study.o lib/file/dicom/quick_scan.o lib/image/format/list.o lib/file/dicom/image.o lib/file/config.o lib/point.o lib/image/name_parser.o lib/image/format/xds.o lib/data_type.o lib/args.o lib/file/dicom/patient.o lib/file/dicom/tree.o lib/image/fft.o lib/image/header.o lib/file/dicom/mapper.o lib/file/dicom/select_cmdline.o lib/math/linalg.o lib/image/format/analyse.o lib/file/dicom/element.o lib/file/mmap.o lib/image/format/nifti1.o lib/file/dicom/dict.o lib/image/format/mrtrix.o lib/image/format/base.o lib/image/axis.o lib/image/interp.o lib/math/matrix.o lib/file/dicom/series.o lib/mrtrix.o lib/image/format/mri.o lib/image/object.o lib/image/format/dicom.o lib/app.o lib/file/key_value.o -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lgsl -lgslcblas -lz -o lib/libmrtrix-0_2_12.so STDERR: [CC] src/dwi/tractography/tracker/sd_stream.o In file included from src/dwi/tractography/tracker/base.h:49, from src/dwi/tractography/tracker/sd_stream.h:26, @@ -9405,76 +9571,6 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[LB] bin/tensor2ADC -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor2ADC.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2ADC -[LB] bin/mrinfo -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrinfo.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrinfo -[LB] bin/gen_WM_mask -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/gen_WM_mask.o src/dwi/SH.o src/dwi/gradient.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_WM_mask -[LB] bin/median3D -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/median3D.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/median3D -[LB] bin/gen_ROI -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/gen_ROI.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_ROI -[LB] bin/find_SH_peaks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/SH.o cmd/find_SH_peaks.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/find_SH_peaks -[LB] bin/import_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/import_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/import_tracks -[LB] bin/sdeconv -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/sdeconv.o src/dwi/SH.o src/dwi/gradient.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/sdeconv -[LB] bin/mrabs -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrabs.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrabs -[LB] bin/tensor_metric -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor_metric.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor_metric -[LB] bin/tracks2prob -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/tracks2prob.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tracks2prob -[LB] bin/cat_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/cat_tracks.o src/dwi/tractography/tracker/base.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/cat_tracks -[LB] bin/dwi2tensor -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o cmd/dwi2tensor.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dwi2tensor -[LB] bin/resample_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/resample_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/resample_tracks -[LB] bin/read_ximg -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/read_ximg.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/read_ximg -[LB] bin/dicom_filename -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/dicom_filename.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dicom_filename -[LB] bin/mrstats -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrstats.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrstats -[LB] bin/estimate_response -[LB] bin/streamtrack -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/tracker/base.o src/dwi/SH.o src/dwi/tractography/file.o src/dwi/tractography/tracker/sd_stream.o src/dwi/tractography/tracker/sd_prob.o src/dwi/gradient.o src/dwi/tractography/tracker/dt_stream.o cmd/streamtrack.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/streamtrack -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o src/dwi/SH.o cmd/estimate_response.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/estimate_response -[LB] bin/mradd -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mradd.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mradd -[LB] bin/mrconvert -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrconvert.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrconvert -[LB] bin/average -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/average.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/average -[LB] bin/erode -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/erode.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/erode -[LB] bin/normalise_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/normalise_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/normalise_tracks -[LB] bin/tensor2vector -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor2vector.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2vector -[LB] bin/select_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/select_tracks.o src/dwi/tractography/file.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/select_tracks -[LB] bin/read_dicom -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/read_dicom.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/read_dicom -[LB] bin/tracks2vtk -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tracks2vtk.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tracks2vtk -[LB] bin/truncate_tracks -[LB] bin/gen_unit_warp -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o src/dwi/tractography/mds.o cmd/gen_unit_warp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_unit_warp -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/truncate_tracks.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/truncate_tracks -[LB] bin/track_info -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/track_info.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/track_info -[LB] bin/disp_profile -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/icon.o cmd/disp_profile.o src/dwi/renderer.o src/dwi/SH.o src/dwi/render_frame.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgdk-x11-2.0 -lpangox-1.0 -lX11 -Wl,--export-dynamic -lgmodule-2.0 -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -lz -o bin/disp_profile -[LB] bin/csdeconv -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o cmd/csdeconv.o src/dwi/SH.o src/dwi/sdeconv/constrained.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/csdeconv -[LB] bin/sample_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/sample_tracks.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/sample_tracks -[LB] bin/filter_tracks -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/filter_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/tracker/base.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/filter_tracks STDERR: [CC] src/mrview/sidebar/tractography/track_list.o In file included from src/dwi/tractography/roi.h:28, from src/dwi/tractography/properties.h:27, @@ -9654,24 +9750,62 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ -[LB] bin/gendir -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/gendir.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gendir -[LB] bin/mrtransform -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrtransform.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrtransform -[LB] bin/dwi2SH -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o src/dwi/SH.o cmd/dwi2SH.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dwi2SH -[LB] bin/mrcat -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrcat.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrcat -[LB] bin/mrmult -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrmult.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrmult -[LB] bin/dir2amp -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/dir2amp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dir2amp -[LB] bin/cleanup_ANTS_warp -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/cleanup_ANTS_warp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/cleanup_ANTS_warp -[LB] bin/tensor2FA -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor2FA.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2FA -[LB] bin/threshold -g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/min_max.o cmd/threshold.o src/histogram.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/threshold +[LB] bin/tensor2ADC +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor2ADC.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2ADC +[LB] bin/mrinfo +[LB] bin/gen_WM_mask +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/gen_WM_mask.o src/dwi/SH.o src/dwi/gradient.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_WM_mask +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrinfo.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrinfo +[LB] bin/median3D +[LB] bin/gen_ROI +[LB] bin/find_SH_peaks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/SH.o cmd/find_SH_peaks.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/find_SH_peaks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/gen_ROI.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_ROI +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/median3D.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/median3D +[LB] bin/import_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/import_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/import_tracks +[LB] bin/sdeconv +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/sdeconv.o src/dwi/SH.o src/dwi/gradient.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/sdeconv +[LB] bin/mrabs +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrabs.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrabs +[LB] bin/tensor_metric +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor_metric.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor_metric +[LB] bin/tracks2prob +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/tracks2prob.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tracks2prob +[LB] bin/cat_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/cat_tracks.o src/dwi/tractography/tracker/base.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/cat_tracks +[LB] bin/dwi2tensor +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o cmd/dwi2tensor.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dwi2tensor +[LB] bin/resample_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/resample_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/resample_tracks +[LB] bin/read_ximg +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/read_ximg.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/read_ximg +[LB] bin/dicom_filename +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/dicom_filename.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dicom_filename +[LB] bin/mrstats +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrstats.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrstats +[LB] bin/estimate_response +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o src/dwi/SH.o cmd/estimate_response.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/estimate_response +[LB] bin/disp_profile +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/icon.o cmd/disp_profile.o src/dwi/renderer.o src/dwi/SH.o src/dwi/render_frame.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgdk-x11-2.0 -lpangox-1.0 -lX11 -Wl,--export-dynamic -lgmodule-2.0 -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -lz -o bin/disp_profile +[LB] bin/streamtrack +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/tracker/base.o src/dwi/SH.o src/dwi/tractography/file.o src/dwi/tractography/tracker/sd_stream.o src/dwi/tractography/tracker/sd_prob.o src/dwi/gradient.o src/dwi/tractography/tracker/dt_stream.o cmd/streamtrack.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/streamtrack +[LB] bin/mradd +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mradd.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mradd +[LB] bin/mrconvert +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrconvert.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrconvert +[LB] bin/average +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/average.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/average +[LB] bin/erode +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/erode.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/erode +[LB] bin/normalise_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/normalise_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/normalise_tracks +[LB] bin/tensor2vector +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor2vector.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2vector +[LB] bin/select_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/select_tracks.o src/dwi/tractography/file.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/select_tracks +[LB] bin/read_dicom +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/read_dicom.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/read_dicom STDERR: [CC] src/mrview/image.o In file included from src/mrview/image.h:29, from src/mrview/image.cpp:28: @@ -9848,8 +9982,40 @@ if (fbab) val += fbab * fabs (image.im (os)); os += stride[1]; ^~ +[LB] bin/tracks2vtk +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tracks2vtk.o src/dwi/tractography/mds.o src/dwi/tractography/file.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tracks2vtk +[LB] bin/truncate_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/truncate_tracks.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/truncate_tracks +[LB] bin/gen_unit_warp +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o src/dwi/tractography/mds.o cmd/gen_unit_warp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gen_unit_warp +[LB] bin/track_info +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/track_info.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/track_info +[LB] bin/csdeconv +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o cmd/csdeconv.o src/dwi/SH.o src/dwi/sdeconv/constrained.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/csdeconv +[LB] bin/sample_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/sample_tracks.o src/dwi/tractography/mds.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/sample_tracks +[LB] bin/filter_tracks +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/tractography/file.o cmd/filter_tracks.o src/dwi/tractography/mds.o src/dwi/tractography/tracker/base.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/filter_tracks +[LB] bin/gendir +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/gendir.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/gendir [LB] bin/mrview g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/mrview/display_area.o src/mrview/mode/normal.o src/mrview/window.o src/mrview/dialog/progress.o src/mrview/sidebar/roi_analysis.o src/mrview/sidebar/roi_analysis/roi_list.o src/mrview/texture.o src/dialog/file.o src/mrview/mode/base.o src/mrview/sidebar/tractography/roi_list.o src/icon.o src/dwi/tractography/mds.o src/mrview/dialog/opengl.o src/mrview/pane.o cmd/mrview.o src/mrview/sidebar/tractography/track_list_item.o src/mrview/sidebar/overlay.o src/mrview/sidebar/orientation_plot.o src/mrview/slice.o src/dwi/renderer.o src/mrview/sidebar/tractography/track_list.o src/mrview/sidebar/screen_capture.o src/dwi/tractography/file.o src/mrview/dialog/error.o src/mrview/sidebar/tractography.o src/mrview/dialog/properties.o src/dwi/render_frame.o src/dwi/SH.o src/mrview/sidebar/main.o src/mrview/image.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgdk-x11-2.0 -lpangox-1.0 -lX11 -Wl,--export-dynamic -lgmodule-2.0 -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -lz -o bin/mrview +[LB] bin/mrtransform +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrtransform.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrtransform +[LB] bin/dwi2SH +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/dwi/gradient.o src/dwi/SH.o cmd/dwi2SH.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dwi2SH +[LB] bin/mrcat +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrcat.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrcat +[LB] bin/mrmult +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/mrmult.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/mrmult +[LB] bin/dir2amp +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/dir2amp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/dir2amp +[LB] bin/cleanup_ANTS_warp +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/cleanup_ANTS_warp.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/cleanup_ANTS_warp +[LB] bin/tensor2FA +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib cmd/tensor2FA.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/tensor2FA +[LB] bin/threshold +g++ -Wl,-rpath,$ORIGIN/../lib -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -Llib src/min_max.o cmd/threshold.o src/histogram.o -lmrtrix-0_2_12 -lgsl -lgslcblas -lglibmm-2.4 -lgobject-2.0 -lsigc-2.0 -lgthread-2.0 -pthread -lglib-2.0 -lz -o bin/threshold # build icon convert icons/mrtrix.xpm -resize 32x32 mrtrix.xpm make[1]: Leaving directory '/build/mrtrix-0.2.13' @@ -9880,48 +10046,50 @@ debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/mrtrix-0.2.13' dh_shlibdeps -l /build/mrtrix-0.2.13/lib -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpangocairo-1.0.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/truncate_tracks debian/mrtrix/usr/lib/mrtrix/bin/cat_tracks debian/mrtrix/usr/lib/mrtrix/bin/read_ximg debian/mrtrix/usr/lib/mrtrix/bin/mradd debian/mrtrix/usr/lib/mrtrix/bin/mrcat debian/mrtrix/usr/lib/mrtrix/bin/resample_tracks debian/mrtrix/usr/lib/mrtrix/bin/threshold debian/mrtrix/usr/lib/mrtrix/bin/mrstats debian/mrtrix/usr/lib/mrtrix/bin/cleanup_ANTS_warp debian/mrtrix/usr/lib/mrtrix/lib/libmrtrix-0_2_12.so debian/mrtrix/usr/lib/mrtrix/bin/mrmult debian/mrtrix/usr/lib/mrtrix/bin/dir2amp debian/mrtrix/usr/lib/mrtrix/bin/tensor2vector debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/gen_unit_warp debian/mrtrix/usr/lib/mrtrix/bin/tensor2FA debian/mrtrix/usr/lib/mrtrix/bin/track_info debian/mrtrix/usr/lib/mrtrix/bin/find_SH_peaks debian/mrtrix/usr/lib/mrtrix/bin/dicom_filename debian/mrtrix/usr/lib/mrtrix/bin/sdeconv debian/mrtrix/usr/lib/mrtrix/bin/erode debian/mrtrix/usr/lib/mrtrix/bin/read_dicom debian/mrtrix/usr/lib/mrtrix/bin/csdeconv debian/mrtrix/usr/lib/mrtrix/bin/sample_tracks debian/mrtrix/usr/lib/mrtrix/bin/tracks2vtk debian/mrtrix/usr/lib/mrtrix/bin/gen_ROI debian/mrtrix/usr/lib/mrtrix/bin/mrconvert debian/mrtrix/usr/lib/mrtrix/bin/gendir debian/mrtrix/usr/lib/mrtrix/bin/dwi2tensor debian/mrtrix/usr/lib/mrtrix/bin/filter_tracks debian/mrtrix/usr/lib/mrtrix/bin/streamtrack debian/mrtrix/usr/lib/mrtrix/bin/tensor_metric debian/mrtrix/usr/lib/mrtrix/bin/mrinfo debian/mrtrix/usr/lib/mrtrix/bin/dwi2SH debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/bin/estimate_response debian/mrtrix/usr/lib/mrtrix/bin/normalise_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrabs debian/mrtrix/usr/lib/mrtrix/bin/average debian/mrtrix/usr/lib/mrtrix/bin/gen_WM_mask debian/mrtrix/usr/lib/mrtrix/bin/tensor2ADC debian/mrtrix/usr/lib/mrtrix/bin/select_tracks debian/mrtrix/usr/lib/mrtrix/bin/import_tracks debian/mrtrix/usr/lib/mrtrix/bin/median3D debian/mrtrix/usr/lib/mrtrix/bin/mrtransform debian/mrtrix/usr/lib/mrtrix/bin/tracks2prob were not linked against libgslcblas.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libICE.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgdk-x11-2.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libfreetype.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libcairomm-1.0.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libcairo.so.2 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgmodule-2.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libX11.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpangoft2-1.0.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgio-2.0.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libXt.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/truncate_tracks debian/mrtrix/usr/lib/mrtrix/bin/cat_tracks debian/mrtrix/usr/lib/mrtrix/bin/read_ximg debian/mrtrix/usr/lib/mrtrix/bin/mradd debian/mrtrix/usr/lib/mrtrix/bin/mrcat debian/mrtrix/usr/lib/mrtrix/bin/resample_tracks debian/mrtrix/usr/lib/mrtrix/bin/threshold debian/mrtrix/usr/lib/mrtrix/bin/mrstats debian/mrtrix/usr/lib/mrtrix/bin/cleanup_ANTS_warp debian/mrtrix/usr/lib/mrtrix/lib/libmrtrix-0_2_12.so debian/mrtrix/usr/lib/mrtrix/bin/mrmult debian/mrtrix/usr/lib/mrtrix/bin/dir2amp debian/mrtrix/usr/lib/mrtrix/bin/tensor2vector debian/mrtrix/usr/lib/mrtrix/bin/gen_unit_warp debian/mrtrix/usr/lib/mrtrix/bin/tensor2FA debian/mrtrix/usr/lib/mrtrix/bin/track_info debian/mrtrix/usr/lib/mrtrix/bin/find_SH_peaks debian/mrtrix/usr/lib/mrtrix/bin/dicom_filename debian/mrtrix/usr/lib/mrtrix/bin/sdeconv debian/mrtrix/usr/lib/mrtrix/bin/erode debian/mrtrix/usr/lib/mrtrix/bin/read_dicom debian/mrtrix/usr/lib/mrtrix/bin/csdeconv debian/mrtrix/usr/lib/mrtrix/bin/sample_tracks debian/mrtrix/usr/lib/mrtrix/bin/tracks2vtk debian/mrtrix/usr/lib/mrtrix/bin/gen_ROI debian/mrtrix/usr/lib/mrtrix/bin/mrconvert debian/mrtrix/usr/lib/mrtrix/bin/gendir debian/mrtrix/usr/lib/mrtrix/bin/dwi2tensor debian/mrtrix/usr/lib/mrtrix/bin/filter_tracks debian/mrtrix/usr/lib/mrtrix/bin/streamtrack debian/mrtrix/usr/lib/mrtrix/bin/tensor_metric debian/mrtrix/usr/lib/mrtrix/bin/mrinfo debian/mrtrix/usr/lib/mrtrix/bin/dwi2SH debian/mrtrix/usr/lib/mrtrix/bin/estimate_response debian/mrtrix/usr/lib/mrtrix/bin/normalise_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrabs debian/mrtrix/usr/lib/mrtrix/bin/average debian/mrtrix/usr/lib/mrtrix/bin/gen_WM_mask debian/mrtrix/usr/lib/mrtrix/bin/tensor2ADC debian/mrtrix/usr/lib/mrtrix/bin/select_tracks debian/mrtrix/usr/lib/mrtrix/bin/import_tracks debian/mrtrix/usr/lib/mrtrix/bin/median3D debian/mrtrix/usr/lib/mrtrix/bin/mrtransform debian/mrtrix/usr/lib/mrtrix/bin/tracks2prob were not linked against libgthread-2.0.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libSM.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgiomm-2.4.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libXt.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/read_ximg debian/mrtrix/usr/lib/mrtrix/bin/cat_tracks debian/mrtrix/usr/lib/mrtrix/bin/estimate_response debian/mrtrix/usr/lib/mrtrix/bin/mradd debian/mrtrix/usr/lib/mrtrix/bin/mrconvert debian/mrtrix/usr/lib/mrtrix/bin/threshold debian/mrtrix/usr/lib/mrtrix/bin/tensor_metric debian/mrtrix/usr/lib/mrtrix/bin/read_dicom debian/mrtrix/usr/lib/mrtrix/bin/dwi2tensor debian/mrtrix/usr/lib/mrtrix/bin/streamtrack debian/mrtrix/usr/lib/mrtrix/bin/gendir debian/mrtrix/usr/lib/mrtrix/bin/gen_unit_warp debian/mrtrix/usr/lib/mrtrix/bin/truncate_tracks debian/mrtrix/usr/lib/mrtrix/bin/gen_WM_mask debian/mrtrix/usr/lib/mrtrix/bin/mrmult debian/mrtrix/usr/lib/mrtrix/bin/gen_ROI debian/mrtrix/usr/lib/mrtrix/bin/sample_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrtransform debian/mrtrix/usr/lib/mrtrix/bin/filter_tracks debian/mrtrix/usr/lib/mrtrix/bin/import_tracks debian/mrtrix/usr/lib/mrtrix/bin/resample_tracks debian/mrtrix/usr/lib/mrtrix/bin/dwi2SH debian/mrtrix/usr/lib/mrtrix/bin/find_SH_peaks debian/mrtrix/usr/lib/mrtrix/bin/sdeconv debian/mrtrix/usr/lib/mrtrix/bin/tracks2vtk debian/mrtrix/usr/lib/mrtrix/bin/normalise_tracks debian/mrtrix/usr/lib/mrtrix/bin/select_tracks debian/mrtrix/usr/lib/mrtrix/bin/dicom_filename debian/mrtrix/usr/lib/mrtrix/bin/mrcat debian/mrtrix/usr/lib/mrtrix/lib/libmrtrix-0_2_12.so debian/mrtrix/usr/lib/mrtrix/bin/mrstats debian/mrtrix/usr/lib/mrtrix/bin/track_info debian/mrtrix/usr/lib/mrtrix/bin/mrabs debian/mrtrix/usr/lib/mrtrix/bin/average debian/mrtrix/usr/lib/mrtrix/bin/tensor2FA debian/mrtrix/usr/lib/mrtrix/bin/cleanup_ANTS_warp debian/mrtrix/usr/lib/mrtrix/bin/erode debian/mrtrix/usr/lib/mrtrix/bin/csdeconv debian/mrtrix/usr/lib/mrtrix/bin/dir2amp debian/mrtrix/usr/lib/mrtrix/bin/tensor2vector debian/mrtrix/usr/lib/mrtrix/bin/mrinfo debian/mrtrix/usr/lib/mrtrix/bin/median3D debian/mrtrix/usr/lib/mrtrix/bin/tensor2ADC debian/mrtrix/usr/lib/mrtrix/bin/tracks2prob were not linked against libgthread-2.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgdk_pixbuf-2.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libatk-1.0.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpangomm-1.4.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgmodule-2.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libICE.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgdk-x11-2.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/read_ximg debian/mrtrix/usr/lib/mrtrix/bin/cat_tracks debian/mrtrix/usr/lib/mrtrix/bin/estimate_response debian/mrtrix/usr/lib/mrtrix/bin/mradd debian/mrtrix/usr/lib/mrtrix/bin/mrconvert debian/mrtrix/usr/lib/mrtrix/bin/threshold debian/mrtrix/usr/lib/mrtrix/bin/tensor_metric debian/mrtrix/usr/lib/mrtrix/bin/read_dicom debian/mrtrix/usr/lib/mrtrix/bin/dwi2tensor debian/mrtrix/usr/lib/mrtrix/bin/streamtrack debian/mrtrix/usr/lib/mrtrix/bin/gendir debian/mrtrix/usr/lib/mrtrix/bin/gen_unit_warp debian/mrtrix/usr/lib/mrtrix/bin/truncate_tracks debian/mrtrix/usr/lib/mrtrix/bin/gen_WM_mask debian/mrtrix/usr/lib/mrtrix/bin/mrmult debian/mrtrix/usr/lib/mrtrix/bin/gen_ROI debian/mrtrix/usr/lib/mrtrix/bin/sample_tracks debian/mrtrix/usr/lib/mrtrix/bin/mrtransform debian/mrtrix/usr/lib/mrtrix/bin/filter_tracks debian/mrtrix/usr/lib/mrtrix/bin/import_tracks debian/mrtrix/usr/lib/mrtrix/bin/resample_tracks debian/mrtrix/usr/lib/mrtrix/bin/dwi2SH debian/mrtrix/usr/lib/mrtrix/bin/find_SH_peaks debian/mrtrix/usr/lib/mrtrix/bin/sdeconv debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/tracks2vtk debian/mrtrix/usr/lib/mrtrix/bin/normalise_tracks debian/mrtrix/usr/lib/mrtrix/bin/select_tracks debian/mrtrix/usr/lib/mrtrix/bin/dicom_filename debian/mrtrix/usr/lib/mrtrix/bin/mrcat debian/mrtrix/usr/lib/mrtrix/bin/mrview debian/mrtrix/usr/lib/mrtrix/lib/libmrtrix-0_2_12.so debian/mrtrix/usr/lib/mrtrix/bin/mrstats debian/mrtrix/usr/lib/mrtrix/bin/track_info debian/mrtrix/usr/lib/mrtrix/bin/mrabs debian/mrtrix/usr/lib/mrtrix/bin/average debian/mrtrix/usr/lib/mrtrix/bin/tensor2FA debian/mrtrix/usr/lib/mrtrix/bin/cleanup_ANTS_warp debian/mrtrix/usr/lib/mrtrix/bin/erode debian/mrtrix/usr/lib/mrtrix/bin/csdeconv debian/mrtrix/usr/lib/mrtrix/bin/dir2amp debian/mrtrix/usr/lib/mrtrix/bin/tensor2vector debian/mrtrix/usr/lib/mrtrix/bin/mrinfo debian/mrtrix/usr/lib/mrtrix/bin/median3D debian/mrtrix/usr/lib/mrtrix/bin/tensor2ADC debian/mrtrix/usr/lib/mrtrix/bin/tracks2prob were not linked against libgslcblas.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpango-1.0.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libfontconfig.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libcairomm-1.0.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpangox-1.0.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libcairo.so.2 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgdk_pixbuf-2.0.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libgiomm-2.4.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libX11.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libatk-1.0.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libfreetype.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpangoft2-1.0.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libXmu.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpango-1.0.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrtrix/usr/lib/mrtrix/bin/disp_profile debian/mrtrix/usr/lib/mrtrix/bin/mrview were not linked against libpangocairo-1.0.so.0 (they use none of the library's symbols) make[1]: Leaving directory '/build/mrtrix-0.2.13' dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mrtrix-dbgsym' in '../mrtrix-dbgsym_0.2.13-2_i386.deb'. -dpkg-deb: building package 'mrtrix' in '../mrtrix_0.2.13-2_i386.deb'. dpkg-deb: building package 'mrtrix-doc' in '../mrtrix-doc_0.2.13-2_all.deb'. +dpkg-deb: building package 'mrtrix' in '../mrtrix_0.2.13-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mrtrix_0.2.13-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/22601/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22601/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/33734 and its subdirectories -I: Current time: Fri Jun 18 14:23:53 -12 2021 -I: pbuilder-time-stamp: 1624069433 +I: removing directory /srv/workspace/pbuilder/22601 and its subdirectories +I: Current time: Sun May 17 10:11:52 +14 2020 +I: pbuilder-time-stamp: 1589659912