Diff of the two buildlogs: -- --- b1/build.log 2021-09-01 10:54:49.094379507 +0000 +++ b2/build.log 2021-09-01 11:45:14.941389626 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Oct 4 04:46:49 -12 2022 -I: pbuilder-time-stamp: 1664902009 +I: Current time: Thu Sep 2 00:54:59 +14 2021 +I: pbuilder-time-stamp: 1630493699 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 22 14:48:32 2019 -12 +gpgv: Signature made Wed Jan 23 16:48:32 2019 +14 gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc @@ -33,138 +33,172 @@ dpkg-source: info: applying debian_build_cfg I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/60333/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/9078/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9078/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/9078/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='108baf21ccdf4d4f9e18c299d01df033' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='60333' - PS1='# ' - PS2='> ' + INVOCATION_ID=6d3c4aa155c44fbc800e0fc72fe1ec20 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=9078 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.4JJGdaCmxm/pbuilderrc_TisF --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.4JJGdaCmxm/b1 --logfile b1/build.log mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.4JJGdaCmxm/pbuilderrc_ukSn --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.4JJGdaCmxm/b2 --logfile b2/build.log mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-686-pae #1 SMP Debian 5.10.46-4 (2021-08-03) i686 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown - -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp - -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash - -rwxr-xr-x 1 root root 120676 Feb 28 2019 date - -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd - -rwxr-xr-x 1 root root 100620 Feb 28 2019 df - -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir - -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 34532 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln - -rwxr-xr-x 1 root root 55400 Jul 26 2018 login - -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls - -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 42348 Jan 9 2019 more - -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount - -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm - -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 9 02:48 sh -> dash - -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty - -rwsr-xr-x 1 root root 71072 Jan 9 2019 su - -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync - -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar - -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch - -rwxr-xr-x 1 root root 34532 Feb 28 2019 true - -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount - -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/60333/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 2 00:55 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 7 22:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/9078/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -653,7 +687,7 @@ Get: 428 http://deb.debian.org/debian buster/main i386 libqt4-opengl i386 4:4.8.7+dfsg-18+deb10u1 [387 kB] Get: 429 http://deb.debian.org/debian buster/main i386 libqt4-opengl-dev i386 4:4.8.7+dfsg-18+deb10u1 [70.3 kB] Get: 430 http://deb.debian.org/debian buster/main i386 matlab-support-dev all 0.0.21 [7348 B] -Fetched 218 MB in 5s (40.4 MB/s) +Fetched 218 MB in 5s (40.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -2447,7 +2481,8 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_source.changes +hostname: Name or service not known +I: Running cd /build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_source.changes dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-3 dpkg-buildpackage: info: source distribution unstable @@ -2524,36 +2559,35 @@ version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... -building targets: bin/tcktransform bin/maskdump bin/tckedit bin/tckconvert bin/tsfinfo bin/dwidenoise bin/sh2power bin/mraverageheader bin/tck2fixel bin/mrcalc bin/connectomestats bin/label2mesh bin/tckstats bin/mrconvert bin/mrmath bin/fixel2sh bin/tckdfc bin/dwi2mask bin/mrhistmatch bin/transformconvert bin/meshconvert bin/dcminfo bin/tckinfo bin/warpconvert bin/fixel2tsf bin/mrstats bin/dirgen bin/mrclusterstats bin/fixelconvert bin/meshfilter bin/tckglobal bin/label2colour bin/mrcheckerboardmask bin/transformcompose bin/amp2sh bin/tsfvalidate bin/maskfilter bin/peaks2amp bin/mrdegibbs bin/tsfsmooth bin/mrview bin/mrmetric bin/fod2dec bin/shbasis bin/warp2metric bin/5tt2gmwmi bin/dwiextract bin/mrpad bin/5ttcheck bin/tensor2metric bin/tcksample bin/dirmerge bin/tckresample bin/dwi2tensor bin/tsfdivide bin/dwi2fod bin/sh2amp bin/tckgen bin/dirorder bin/tckmap bin/mrthreshold bin/warpinvert bin/dirsplit bin/fixel2voxel bin/5tt2vis bin/dwi2adc bin/dirflip bin/mrfilter bin/5ttedit bin/mrinfo bin/mesh2voxel bin/transformcalc bin/shview bin/mrcrop bin/vectorstats bin/amp2response bin/mrcat bin/afdconnectivity bin/fixelcrop bin/sh2response bin/shconv bin/mtnormalise bin/voxel2mesh bin/mrresize bin/tsfmult bin/tsfthreshold bin/voxel2fixel bin/dwinormalise bin/connectome2tck bin/fod2fixel bin/labelconvert bin/fixelcfestats bin/tcksift2 bin/dcmedit bin/mrtransform bin/mrregister bin/warpcorrect bin/sh2peaks bin/mrdump bin/warpinit bin/tck2connectome bin/dirstat bin/tcksift bin/mredit bin/fixelreorient bin/mrhistogram bin/fixelcorrespondence +building targets: bin/dwi2mask bin/shview bin/maskfilter bin/mrdump bin/tsfsmooth bin/meshconvert bin/tensor2metric bin/transformconvert bin/shbasis bin/transformcompose bin/tck2fixel bin/mrconvert bin/tckstats bin/voxel2fixel bin/amp2response bin/maskdump bin/tcksift2 bin/sh2response bin/fixelcorrespondence bin/sh2power bin/fod2dec bin/5tt2gmwmi bin/fixelconvert bin/fod2fixel bin/fixelcfestats bin/fixelreorient bin/afdconnectivity bin/labelconvert bin/tckinfo bin/dwiextract bin/tsfmult bin/mrcheckerboardmask bin/dirgen bin/tckdfc bin/tcktransform bin/5ttcheck bin/tcksift bin/tckmap bin/tsfinfo bin/tckresample bin/label2colour bin/dwinormalise bin/dwi2adc bin/fixel2tsf bin/mrdegibbs bin/mrview bin/mrthreshold bin/dirstat bin/dwi2tensor bin/mrclusterstats bin/tckedit bin/warpcorrect bin/warpinit bin/tckgen bin/dwidenoise bin/mtnormalise bin/mrmath bin/warpconvert bin/mrstats bin/tsfvalidate bin/shconv bin/mrcat bin/connectome2tck bin/tcksample bin/dcmedit bin/dwi2fod bin/tckglobal bin/tsfthreshold bin/mrpad bin/sh2peaks bin/dirmerge bin/mraverageheader bin/mrfilter bin/dirorder bin/mrinfo bin/warp2metric bin/sh2amp bin/dcminfo bin/fixel2sh bin/tsfdivide bin/mrregister bin/dirsplit bin/dirflip bin/mredit bin/mrmetric bin/peaks2amp bin/tckconvert bin/warpinvert bin/fixel2voxel bin/voxel2mesh bin/fixelcrop bin/mrcalc bin/5ttedit bin/mrhistogram bin/tck2connectome bin/meshfilter bin/mesh2voxel bin/amp2sh bin/mrhistmatch bin/mrresize bin/vectorstats bin/mrtransform bin/connectomestats bin/mrcrop bin/5tt2vis bin/transformcalc bin/label2mesh TODO list contains 505 items - launching 18 threads + launching 10 threads g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o @@ -2561,17 +2595,17 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/gui.cpp -o tmp/src/gui/gui.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o @@ -2587,10 +2621,10 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o -moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o +moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o @@ -2601,51 +2635,46 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o ( 1/505) [CC] tmp/cmd/labelconvert.o -( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 3/505) [CC] tmp/src/dwi/directions/file.o +( 2/505) [CC] tmp/src/dwi/tractography/tracking/method.o ( 4/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp ( 5/505) [CC] tmp/cmd/mrcalc.o ( 6/505) [CC] tmp/core/version.o ( 7/505) [CC] tmp/src/gui/projection.o ( 8/505) [CC] tmp/cmd/mrdump.o ( 9/505) [CC] tmp/core/file/dicom/tree.o -( 11/504) [MOC] tmp/src/gui/shview/render_window_moc.cpp -( 12/504) [CC] tmp/src/dwi/tractography/resampling/upsampler.o ( 10/505) [CC] tmp/src/registration/transform/rigid.o -( 13/504) [CC] tmp/cmd/dirstat.o -( 14/504) [CC] tmp/src/gui/shapes/cylinder.o -( 15/504) [CC] tmp/cmd/mrconvert.o -( 16/504) [CC] tmp/src/dwi/tractography/mapping/mapper.o -( 17/504) [CC] tmp/cmd/dwiextract.o -( 19/504) [CC] tmp/core/file/dicom/dict.o -( 18/504) [CC] tmp/src/dwi/directions/set.o +( 11/505) [MOC] tmp/src/gui/shview/render_window_moc.cpp +( 12/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o +( 13/505) [CC] tmp/cmd/dirstat.o +( 14/505) [CC] tmp/src/gui/shapes/cylinder.o +( 15/505) [CC] tmp/cmd/mrconvert.o +( 16/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o +( 17/505) [CC] tmp/cmd/dwiextract.o +( 18/505) [CC] tmp/src/dwi/directions/set.o +( 19/505) [CC] tmp/core/file/dicom/dict.o ( 20/505) [CC] tmp/core/image_io/default.o ( 21/505) [CC] tmp/core/app.o -( 22/504) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o -( 23/504) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o -( 24/504) [CC] tmp/cmd/tsfmult.o -( 25/505) [CC] tmp/cmd/warpinvert.o -( 26/505) [CC] tmp/core/formats/xds.o -( 27/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp -( 28/505) [CC] tmp/src/connectome/lut.o -( 29/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp -( 30/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o -( 31/504) [CC] tmp/cmd/fod2dec.o -( 32/505) [CC] tmp/src/gui/mrview/mode/volume.o -( 33/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -( 34/505) [CC] tmp/cmd/mrmetric.o -( 35/505) [CC] tmp/src/gui/mrview/tool/odf/item.o -( 37/504) [CC] tmp/cmd/mrcheckerboardmask.o -( 36/504) [CC] tmp/src/gui/gui.o -( 38/504) [CC] tmp/src/gui/mrview/tool/base.o -( 39/504) [CC] tmp/src/surface/freesurfer.o -( 40/505) [CC] tmp/core/phase_encoding.o -( 41/504) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -( 42/504) [CC] tmp/src/surface/mesh_multi.o -( 43/504) [CC] tmp/cmd/mrthreshold.o -( 44/505) [CC] tmp/core/image_io/ram.o -( 45/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o +( 22/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o +( 23/505) [CC] tmp/cmd/tsfmult.o +( 24/505) [CC] tmp/cmd/warpinvert.o +( 25/505) [CC] tmp/core/formats/xds.o +( 26/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp +( 27/505) [CC] tmp/src/connectome/lut.o +( 28/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp +( 29/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o +( 30/505) [CC] tmp/cmd/shview.o +( 31/505) [CC] tmp/src/gui/mrview/mode/volume.o +( 32/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp +( 33/505) [CC] tmp/cmd/mrmetric.o +( 34/505) [CC] tmp/src/gui/mrview/tool/odf/item.o +( 35/505) [CC] tmp/src/gui/gui.o +( 36/505) [CC] tmp/cmd/mrcheckerboardmask.o +( 37/505) [CC] tmp/src/gui/mrview/tool/base.o +( 38/505) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o: @@ -2655,34 +2684,40 @@ ~~~~~~^~~~~~~~~~~~~~~~ -( 46/504) [CC] tmp/cmd/tckmap.o -( 47/504) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp -( 48/504) [CC] tmp/src/registration/transform/initialiser.o -( 49/504) [CC] tmp/core/math/SH.o -( 50/504) [CC] tmp/src/gui/mrview/adjust_button.o -( 51/504) [CC] tmp/src/gui/mrview/tool/connectome/node.o -( 52/505) [CC] tmp/src/gui/color_button.o -( 53/504) [CC] tmp/cmd/5ttedit.o -( 54/504) [CC] tmp/src/dwi/tractography/roi.o -( 55/505) [CC] tmp/cmd/dirgen.o -( 56/504) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o -( 57/505) [CC] tmp/cmd/tcksample.o -( 58/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o -( 60/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -( 59/505) [CC] tmp/cmd/mrclusterstats.o -( 61/505) [CC] tmp/src/dwi/fmls.o -( 62/505) [CC] tmp/src/surface/filter/vertex_transform.o -( 63/505) [CC] tmp/core/formats/nifti2_gz.o -( 64/504) [CC] tmp/src/stats/tfce.o -( 65/504) [CC] tmp/cmd/mrhistogram.o -( 66/504) [CC] tmp/cmd/mrview.o -( 67/504) [CC] tmp/cmd/sh2amp.o -( 68/504) [CC] tmp/core/file/nifti1_utils.o -( 69/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o -( 70/505) [CC] tmp/core/formats/dicom.o -( 71/505) [CC] tmp/src/gui/dialog/image_prg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o +( 40/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp +( 39/505) [CC] tmp/core/phase_encoding.o +( 41/505) [CC] tmp/src/surface/mesh_multi.o +( 42/505) [CC] tmp/cmd/mrthreshold.o +( 43/505) [CC] tmp/core/image_io/ram.o +( 44/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o +( 45/505) [CC] tmp/cmd/tckmap.o +( 46/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp +( 47/505) [CC] tmp/src/registration/transform/initialiser.o +( 48/505) [CC] tmp/core/math/SH.o +( 49/505) [CC] tmp/src/gui/mrview/adjust_button.o +( 50/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o +( 51/505) [CC] tmp/src/gui/color_button.o +( 52/505) [CC] tmp/cmd/5ttedit.o +( 53/505) [CC] tmp/src/dwi/tractography/roi.o +( 54/505) [CC] tmp/cmd/dirgen.o +( 55/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o +( 57/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o +( 58/505) [CC] tmp/cmd/mrclusterstats.o +( 56/505) [CC] tmp/cmd/dirmerge.o +( 59/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp +( 60/505) [CC] tmp/src/dwi/fmls.o +( 61/505) [CC] tmp/src/surface/filter/vertex_transform.o +( 62/505) [CC] tmp/core/formats/nifti2_gz.o +( 63/505) [CC] tmp/src/stats/tfce.o +( 64/505) [CC] tmp/cmd/mrhistogram.o +( 65/505) [CC] tmp/cmd/mrview.o +( 66/505) [CC] tmp/cmd/sh2amp.o +( 67/505) [CC] tmp/core/file/nifti1_utils.o +( 68/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o +( 69/505) [CC] tmp/core/formats/dicom.o +( 70/505) [CC] tmp/src/gui/dialog/image_properties_moc.o +( 71/505) [CC] tmp/cmd/maskdump.o +( 72/50g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o @@ -2694,7 +2729,6 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o -moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o @@ -2706,7 +2740,6 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o @@ -2732,6 +2765,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o @@ -2744,15 +2778,9 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o -operties_moc.o -( 72/504) [CC] tmp/cmd/maskdump.o -( 73/505) [CC] tmp/cmd/meshfilter.o -( 74/505) [CC] tmp/src/gui/dialog/report_exception.o -( 75/505) [CC] tmp/src/dwi/tractography/editing/editing.o -( 76/505) [CC] tmp/cmd/5ttcheck.o -( 77/505) [RCC] tmp/src/gui/shview/icons.cpp -( 78/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o +5) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o: @@ -2762,68 +2790,70 @@ ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -( 79/504) [CC] tmp/src/gui/dialog/dialog.o -( 80/504) [CC] tmp/src/dwi/tractography/resampling/endpoints.o -( 81/504) [CC] tmp/cmd/mrdegibbs.o -( 82/505) [CC] tmp/src/surface/filter/smooth.o -( 83/504) [CC] tmp/src/dwi/tractography/rng.o -( 84/504) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o -( 85/504) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -( 86/504) [CC] tmp/src/gui/mrview/displayable.o -( 87/505) [CC] tmp/src/gui/shview/render_window_moc.o -( 88/504) [CC] tmp/src/dwi/tractography/connectome/matrix.o -( 89/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp -( 90/505) [CC] tmp/src/dwi/tractography/connectome/extract.o -( 91/505) [CC] tmp/src/gui/mrview/colourmap_button.o -( 92/504) [CC] tmp/src/gui/mrview/tool/odf/odf.o -( 93/505) [CC] tmp/src/dwi/directions/predefined.o -( 94/505) [CC] tmp/cmd/mrstats.o -( 95/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o -( 96/505) [CC] tmp/src/dwi/tractography/editing/receiver.o -( 97/504) [CC] tmp/core/image_io/mosaic.o -( 98/505) [CC] tmp/src/dwi/tractography/seeding/basic.o -( 99/504) [CC] tmp/src/gui/opengl/lighting_moc.o -(100/505) [CC] tmp/cmd/tckinfo.o -(101/504) [CC] tmp/src/stats/permstack.o -(102/504) [CC] tmp/cmd/dirsplit.o -(103/504) [CC] tmp/src/gui/mrview/tool/odf/model.o -(104/505) [CC] tmp/core/file/dicom/series.o -(105/504) [CC] tmp/cmd/tckglobal.o -(106/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp -(107/505) [CC] tmp/core/formats/nifti1.o -(108/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o -(109/505) [CC] tmp/src/gui/shapes/sphere.o -(110/505) [CC] tmp/core/formats/mri.o -(111/505) [CC] tmp/cmd/dwi2adc.o -(112/504) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o -(113/505) [CC] tmp/core/math/average_space.o -(114/505) [CC] tmp/src/dwi/gradient.o -(115/505) [CC] tmp/cmd/mrfilter.o -(116/504) [CC] tmp/src/dwi/tractography/ACT/act.o -(117/504) [CC] tmp/core/file/dicom/element.o -(118/504) [CC] tmp/src/dwi/tractography/editing/worker.o -(119/505) [CC] tmp/cmd/tsfthreshold.o -(120/504) [CC] tmp/src/gui/mrview/combo_box_error.o -(121/504) [CC] tmp/cmd/meshconvert.o -(122/504) [CC] tmp/src/registration/nonlinear.o -(123/504) [CC] tmp/cmd/amp2response.o -(124/505) [CC] tmp/core/file/name_parser.o -(125/504) [CC] tmp/cmd/tck2connectome.o -(126/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o -(127/505) [CC] tmp/src/dwi/tractography/seeding/list.o -(128/504) [CC] tmp/cmd/maskfilter.o -(129/505) [CC] tmp/core/stats.o -(130/504) [CC] tmp/src/surface/filter/base.o -(131/505) [CC] tmp/src/gui/mrview/gui_image.o -(132/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o -(133/505) [CC] tmp/src/gui/mrview/window.o -(134/504) [CC] tmp/cmd/mrresize.o -(135/505) [CC] tmp/cmd/tsfvalidate.o +( 73/505) [CC] tmp/src/gui/dialog/report_exception.o +( 74/505) [CC] tmp/src/dwi/tractography/editing/editing.o +( 75/505) [CC] tmp/cmd/5ttcheck.o +( 76/505) [RCC] tmp/src/gui/shview/icons.cpp +( 77/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o +( 78/505) [CC] tmp/src/gui/dialog/dialog.o +( 79/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o +( 80/505) [CC] tmp/cmd/mrdegibbs.o +( 81/505) [CC] tmp/src/surface/filter/smooth.o +( 82/505) [CC] tmp/src/dwi/tractography/rng.o +( 83/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o +( 84/505) [CC] tmp/src/gui/mrview/displayable.o +( 85/505) [CC] tmp/src/gui/shview/render_window_moc.o +( 86/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o +( 87/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp +( 88/505) [CC] tmp/src/dwi/tractography/connectome/extract.o +( 89/505) [CC] tmp/src/gui/mrview/colourmap_button.o +( 90/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o +( 91/505) [CC] tmp/src/dwi/directions/predefined.o +( 92/505) [CC] tmp/cmd/mrstats.o +( 93/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o +( 94/505) [CC] tmp/src/dwi/tractography/editing/receiver.o +( 95/505) [CC] tmp/src/dwi/tractography/seeding/basic.o +( 96/505) [CC] tmp/src/gui/opengl/lighting_moc.o +( 97/505) [CC] tmp/cmd/tckinfo.o +( 98/505) [CC] tmp/src/stats/permstack.o +( 99/505) [CC] tmp/cmd/dirsplit.o +(100/505) [CC] tmp/src/gui/mrview/tool/odf/model.o +(101/505) [CC] tmp/core/file/dicom/series.o +(102/505) [CC] tmp/cmd/tckglobal.o +(103/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp +(104/505) [CC] tmp/core/formats/nifti1.o +(105/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o +(106/505) [CC] tmp/src/gui/shapes/sphere.o +(107/505) [CC] tmp/core/formats/mri.o +(108/505) [CC] tmp/cmd/dwi2adc.o +(109/505) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o +(110/505) [CC] tmp/core/math/average_space.o +(111/505) [CC] tmp/src/dwi/gradient.o +(112/505) [CC] tmp/cmd/mrfilter.o +(113/505) [CC] tmp/src/dwi/tractography/ACT/act.o +(114/505) [CC] tmp/core/file/dicom/element.o +(115/505) [CC] tmp/src/dwi/tractography/editing/worker.o +(116/505) [CC] tmp/cmd/tsfthreshold.o +(117/505) [CC] tmp/src/gui/mrview/combo_box_error.o +(118/505) [CC] tmp/cmd/meshconvert.o +(119/505) [CC] tmp/src/registration/nonlinear.o +(120/505) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o +(121/505) [CC] tmp/cmd/amp2response.o +(122/505) [CC] tmp/core/file/name_parser.o +(123/505) [CC] tmp/cmd/tck2connectome.o +(124/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o +(125/505) [CC] tmp/src/dwi/tractography/seeding/list.o +(126/505) [CC] tmp/cmd/maskfilter.o +(127/505) [CC] tmp/core/stats.o +(128/505) [CC] tmp/src/surface/filter/base.o +(129/505) [CC] tmp/src/gui/mrview/gui_image.o +(130/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o +(131/505) [CC] tmp/src/gui/mrview/window.o +(132/505) [CC] tmp/cmd/mrresize.o +(133/505) [CC] tmp/src/gui/mrview/volume.o +(134/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protectog++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/cursor.cpp -o tmp/src/gui/cursor.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-securg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/cursor.cpp -o tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o @@ -2853,14 +2883,11 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/bitset.cpp -o tmp/core/bitset.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o -r-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o: +ity -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o: In file included from cmd/tck2connectome.cpp:28: src/dwi/tractography/connectome/metric.h: In member function 'void MR::DWI::Tractography::Connectome::Metric::set_scale_invnodevol(MR::Image&, bool)': @@ -2869,46 +2896,40 @@ ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -(136/504) [CC] tmp/src/gui/mrview/volume.o -(137/505) [CC] tmp/core/formats/mrtrix_gz.o -(138/504) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o -(139/505) [CC] tmp/src/gui/cursor.o -(140/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o -(141/504) [CC] tmp/src/dwi/tractography/tracking/tractography.o -(142/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o -(143/505) [CC] tmp/src/gui/mrview/mode/slice.o -(144/505) [CC] tmp/core/file/dicom/patient.o -(145/504) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o -(146/505) [CC] tmp/core/formats/mrtrix.o -(147/505) [CC] tmp/cmd/tckdfc.o -(148/504) [CC] tmp/cmd/5tt2gmwmi.o -(149/505) [CC] tmp/cmd/warpinit.o -(150/504) [CC] tmp/src/gui/dialog/image_properties.o -(151/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -(152/505) [CC] tmp/cmd/tckresample.o -(153/504) [CC] tmp/src/dwi/tractography/GT/externalenergy.o -(154/504) [CC] tmp/src/surface/algo/mesh2image.o -(155/504) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o -(156/505) [CC] tmp/core/file/dicom/select_cmdline.o -(157/505) [CC] tmp/cmd/tcksift.o -(158/505) [CC] tmp/src/gui/shview/render_window.o -(159/505) [CC] tmp/cmd/mesh2voxel.o -(160/504) [CC] tmp/src/connectome/enhance.o -(161/504) [CC] tmp/src/surface/scalar.o -(162/504) [CC] tmp/src/gui/dialog/progress.o -(163/504) [CC] tmp/core/file/nifti2_utils.o -(164/504) [MOC] tmp/src/gui/lighting_dock_moc.cpp -(165/504) [CC] tmp/cmd/mrhistmatch.o -(166/505) [CC] tmp/cmd/sh2response.o -(167/504) [CC] tmp/cmd/5tt2vis.o -(168/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o -(169/504) [CC] tmp/cmd/fixelconvert.o -(170/504) [CC] tmp/cmd/mrcrop.o -(171/504) [CC] tmp/core/bitset.o -(172/505) [CC] tmp/cmd/connectomestats.o -(173/504) [CC] tmp/cmd/tsfdivide.o -(174/505) [CC] tmp/core/signal_handler.o -(175/505) [CC] tmp/src/gui/mrview/tool/overlay.o +(135/505) [CC] tmp/src/gui/cursor.o +(136/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o +(137/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o +(138/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o +(139/505) [CC] tmp/src/gui/mrview/mode/slice.o +(140/505) [CC] tmp/core/file/dicom/patient.o +(141/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o +(142/505) [CC] tmp/core/formats/mrtrix.o +(143/505) [CC] tmp/cmd/tckdfc.o +(144/505) [CC] tmp/cmd/5tt2gmwmi.o +(145/505) [CC] tmp/cmd/warpinit.o +(146/505) [CC] tmp/src/gui/dialog/image_properties.o +(147/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp +(148/505) [CC] tmp/cmd/tckresample.o +(149/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o +(150/505) [CC] tmp/src/surface/algo/mesh2image.o +(151/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o +(152/505) [CC] tmp/core/file/dicom/select_cmdline.o +(153/505) [CC] tmp/cmd/tcksift.o +(154/505) [CC] tmp/src/gui/shview/render_window.o +(155/505) [CC] tmp/cmd/mesh2voxel.o +(156/505) [CC] tmp/src/connectome/enhance.o +(157/505) [CC] tmp/src/surface/scalar.o +(158/505) [CC] tmp/src/gui/dialog/progress.o +(159/505) [CC] tmp/core/file/nifti2_utils.o +(160/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp +(161/505) [CC] tmp/cmd/mrhistmatch.o +(162/505) [CC] tmp/cmd/sh2response.o +(163/505) [CC] tmp/cmd/5tt2vis.o +(164/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o +(165/505) [CC] tmp/src/gui/mrview/tool/fixel/directory.o +(166/505) [CC] tmp/cmd/fixelconvert.o +(167/505) [CC] tmp/cmd/mrcrop.o +(168/505) [CC] tmp/core/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o: @@ -2917,19 +2938,22 @@ if (matrix.rows() != num_nodes()) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ src/gui/mrview/tool/connectome/connectome.cpp: In member function 'bool MR::GUI::MRView::Tool::Connectome::import_vector_file(MR::GUI::MRView::Tool::FileDataVector&, const string&)': -src/gui/mrview/tool/connectome/conneg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o +src/gui/mrview/tool/connectome/connectome.cpp:2703:29: warning: comparison of integer expressions of different signedness: 'Eigen::EigenBase >::Index' {aka 'int'} and 'MR::Connectome::node_t' {aka 'unsigned int'} [-Wsign-compare] + if (data.size() != num_nodes()) { + ~~~~~~~~g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o -ctome.cpp:2703:29: warning: comparison of integer expressions of different signedness: 'Eigen::EigenBase >::Index' {aka 'int'} and 'MR::Connectome::node_t' {aka 'unsigned int'} [-Wsign-compare] - if (data.size() != num_nodes()) { - ~~~~~~~~~~~~^~~~~~~~~~~~~~ +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o +~~~~^~~~~~~~~~~~~~ src/gui/mrview/tool/connectome/connectome.cpp: In member function 'bool MR::GUI::MRView::Tool::Connectome::import_matrix_file(MR::GUI::MRView::Tool::FileDataVector&, const string&)': src/gui/mrview/tool/connectome/connectome.cpp:2726:29: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'int'} and 'MR::Connectome::node_t' {aka 'unsigned int'} [-Wsign-compare] if (temp.rows() != num_nodes()) @@ -2952,16 +2976,19 @@ for (node_t col = row+1; col != in.cols(); ++col) { -(176/504) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o -(177/504) [CC] tmp/src/dwi/directions/mask.o -(178/504) [CC] tmp/src/gui/shview/icons.o -(179/504) [CC] tmp/src/stats/permtest.o -(180/505) [CC] tmp/cmd/dirflip.o -(181/504) [CC] tmp/cmd/fixel2tsf.o -(182/505) [CC] tmp/core/file/dicom/study.o -(183/504) [CC] tmp/cmd/tsfsmooth.o -(184/504) [CC] tmp/src/dwi/tractography/GT/gt.o -(185/504) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o +(169/505) [CC] tmp/cmd/connectomestats.o +(170/505) [CC] tmp/cmd/tsfdivide.o +(171/505) [CC] tmp/core/signal_handler.o +(172/505) [CC] tmp/src/gui/mrview/tool/overlay.o +(173/505) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o +(174/505) [CC] tmp/src/gui/shview/icons.o +(175/505) [CC] tmp/src/stats/permtest.o +(176/505) [CC] tmp/cmd/dirflip.o +(177/505) [CC] tmp/cmd/mrregister.o +(178/505) [CC] tmp/cmd/tsfsmooth.o +(179/505) [CC] tmp/src/dwi/tractography/GT/gt.o +(180/505) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o +(181/505) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: @@ -2972,8 +2999,7 @@ cmd/connectomestats.cpp:223:47: required from here src/connectome/connectome.h:107:32: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare] for (node_t row = 0; row != in.rows(); ++row) { -src/connectome/connectome.h:108:38: warningg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o +src/connectome/connectome.h:108:38: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-cg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o @@ -2990,6 +3016,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o @@ -3002,10 +3029,9 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp @@ -3018,7 +3044,11 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o -: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare] +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o +moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o +ompare] for (node_t col = row+1; col != in.cols(); ++col) { src/connectome/connectome.h: In instantiation of 'bool MR::Connectome::is_directed(MatrixType&) [with MatrixType = Eigen::Array]': src/connectome/connectome.h:104:23: required from 'void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array]' @@ -3029,51 +3059,48 @@ for (node_t col = row+1; col != in.cols(); ++col) { -(186/505) [CC] tmp/src/registration/transform/initialiser_helpers.o -(187/505) [CC] tmp/cmd/tcksift2.o -(188/505) [CC] tmp/cmd/tcktransform.o -(189/504) [CC] tmp/src/gui/mrview/tool/screen_capture.o -(190/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o -(191/504) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o -(192/504) [CC] tmp/src/dwi/tractography/mapping/writer.o -(193/504) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp -(194/504) [CC] tmp/cmd/mtnormalise.o -(195/505) [CC] tmp/core/file/config.o -(196/504) [CC] tmp/src/dwi/tractography/GT/particle.o -(197/505) [CC] tmp/src/dwi/tractography/weights.o -(198/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o -(199/505) [CC] tmp/core/formats/list.o -(200/504) [CC] tmp/src/dwi/tractography/file_base.o -(201/504) [CC] tmp/cmd/sh2power.o -(202/505) [CC] tmp/core/exception.o -(203/505) [CC] tmp/core/formats/mgz.o -(204/504) [CC] tmp/cmd/tckstats.o -(205/504) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o -(206/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o -(207/504) [CC] tmp/src/dwi/tractography/tracking/shared.o -(208/504) [CC] tmp/core/image_io/pipe.o -(209/504) [CC] tmp/core/image_io/tiff.o -(210/504) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o -(211/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp -(212/505) [CC] tmp/core/math/stats/glm.o -(213/504) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o -(214/504) [CC] tmp/src/dwi/tractography/SIFT/sift.o -(215/505) [CC] tmp/cmd/shconv.o -(216/504) [CC] tmp/src/registration/transform/convergence_check.o -(217/505) [CC] tmp/src/gui/dwi/renderer.o -(218/505) [CC] tmp/src/gui/opengl/shader.o -(219/504) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o -(220/504) [CC] tmp/src/gui/opengl/lighting.o -(221/504) [CC] tmp/core/adapter/reslice.o -(222/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -(223/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o -(224/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o -(225/504) [CC] tmp/src/gui/lighting_dock_moc.o -(226/504) [CC] tmp/core/file/json_utils.o -(227/504) [CC] tmp/core/file/mmap.o -(228/504) [CC] tmp/cmd/tckconvert.o -(229/505) [CC] tmp/src/registration/linear.o -(230/504) [CC] tmp/cmd/transformcalc.o +(182/505) [CC] tmp/cmd/tcksift2.o +(183/505) [CC] tmp/cmd/tcktransform.o +(184/505) [CC] tmp/src/gui/mrview/tool/screen_capture.o +(185/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o +(186/505) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o +(187/505) [CC] tmp/src/dwi/tractography/mapping/writer.o +(188/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp +(189/505) [CC] tmp/cmd/mtnormalise.o +(190/505) [CC] tmp/core/file/config.o +(191/505) [CC] tmp/src/dwi/tractography/GT/particle.o +(192/505) [CC] tmp/src/dwi/tractography/weights.o +(193/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o +(194/505) [CC] tmp/core/formats/list.o +(195/505) [CC] tmp/src/dwi/tractography/file_base.o +(196/505) [CC] tmp/cmd/sh2power.o +(197/505) [CC] tmp/core/exception.o +(198/505) [CC] tmp/core/formats/mgz.o +(199/505) [CC] tmp/src/registration/transform/convergence_check.o +(200/505) [CC] tmp/cmd/tckstats.o +(201/505) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o +(202/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o +(203/505) [CC] tmp/src/dwi/tractography/tracking/shared.o +(204/505) [CC] tmp/core/image_io/pipe.o +(205/505) [CC] tmp/core/image_io/tiff.o +(206/505) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o +(207/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp +(208/505) [CC] tmp/core/math/stats/glm.o +(209/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o +(210/505) [CC] tmp/src/dwi/tractography/SIFT/sift.o +(211/505) [CC] tmp/cmd/shconv.o +(212/505) [CC] tmp/src/gui/dwi/renderer.o +(213/505) [CC] tmp/src/gui/opengl/shader.o +(214/505) [CC] tmp/core/image_io/mosaic.o +(215/505) [CC] tmp/src/gui/opengl/lighting.o +(216/505) [CC] tmp/core/adapter/reslice.o +(217/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp +(218/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o +(219/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o +(220/505) [CC] tmp/src/gui/lighting_dock_moc.o +(221/505) [CC] tmp/core/file/json_utils.o +(222/505) [CC] tmp/core/file/mmap.o +(223/505) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o: @@ -3083,14 +3110,16 @@ ~~~~~~~~~~~~~^~~~~~~~~~~~~ -(231/504) [CC] tmp/cmd/fixelcrop.o -(232/505) [CC] g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o -moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o -rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp +(224/505) [CC] tmp/src/registration/linear.o +(225/505) [CC] tmp/cmd/transformcalc.o +(226/505) [CC] tmp/cmd/fixelcrop.o +(227/505) [CC] tmp/src/dwi/tractography/GT/mhsampler.o +(228/505) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp +(229/505) [CC] tmp/src/gui/mrview/tool/overlay_moc.o +(230/505) [CC] tmp/src/gui/opengl/gl.o +(231/505) [RCC] tmp/src/gui/mrview/icons.crcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o @@ -3099,12 +3128,14 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o +moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/shells.cpp -o tmp/src/dwi/shells.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o @@ -3112,6 +3143,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o @@ -3128,7 +3160,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/permutation.cpp -o tmp/core/math/stats/permutation.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o @@ -3140,10 +3172,84 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/analyse.cpp -o tmp/core/formats/analyse.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o +pp +(232/505) [CC] tmp/core/mrtrix.o +(233/505) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o +(234/505) [CC] tmp/cmd/dcminfo.o +(235/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o +(236/505) [CC] tmp/cmd/mrmath.o +(237/505) [CC] tmp/src/gui/shapes/cube.o +(238/505) [CC] tmp/src/surface/mesh.o +(239/505) [CC] tmp/src/gui/dialog/dicom.o +(240/505) [CC] tmp/core/file/ofstream.o +(241/505) [CC] tmp/src/exec_version.o +(242/505) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp +(243/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o +(244/505) [CC] tmp/src/gui/dialog/list.o + +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: + +src/surface/mesh.cpp: In member function 'void MR::Surface::Mesh::save_stl(const string&, bool) const': +src/surface/mesh.cpp:660:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 80 equals destination size [-Wstringop-truncation] + strncpy (header, string.c_str(), 80); + ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + +(245/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o +(246/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp +(247/505) [CC] tmp/src/gui/dwi/render_frame_moc.o +(248/505) [CC] tmp/cmd/warpcorrect.o +(249/505) [CC] tmp/cmd/fixelcfestats.o +(250/505) [CC] tmp/src/dwi/shells.o +(251/505) [CC] tmp/cmd/dcmedit.o +(252/505) [CC] tmp/core/file/dicom/mapper.o +(253/505) [CC] tmp/core/formats/mgh.o +(254/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o +(255/505) [CC] tmp/cmd/fixelreorient.o +(256/505) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp +(257/505) [CC] tmp/src/dwi/directions/mask.o +(258/505) [CC] tmp/cmd/tckgen.o +(259/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o +(260/505) [CC] tmp/core/axes.o +(261/505) [CC] tmp/core/file/tiff.o +(262/505) [CC] tmp/core/datatype.o +(263/505) [CC] tmp/core/header.o +(264/505) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o +(265/505) [CC] tmp/src/gui/shapes/halfsphere.o +(266/505) [CC] tmp/cmd/label2colour.o +(267/505) [MOC] tmp/src/gui/mrview/displayable_moc.cpp +(268/505) [CC] tmp/src/gui/mrview/displayable_moc.o +(269/505) [CC] tmp/cmd/mrtransform.o +(270/505) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o +(271/505) [CC] tmp/src/gui/mrview/combo_box_error_moc.o +(272/505) [CC] tmp/src/gui/mrview/colourmap_button_moc.o +(273/505) [CC] tmp/core/math/stats/permutation.o +(274/505) [CC] tmp/cmd/fixel2tsf.o +(275/505) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o +(276/505) [CC] tmp/core/image_io/fetch_store.o +(277/505) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o +(278/505) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o +(279/505) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o +(280/505) [CC] tmp/src/dwi/tractography/properties.o + +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o: + +cmd/fixelcfestats.cpp: In function 'void run()': +cmd/fixelcfestats.cpp:182:43: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'MR::Stats::CFE::index_type' {aka 'unsigned int'} [-Wsign-compare] + for (mask.index(0) = 0; mask.index(0) != num_fixels; ++mask.index(0)) + ~~~~~~~~~~~~~~^~~~~~~~~~~~~ + + +(281/505) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o +(282/505) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp +(283/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o +(284/505) [CC] tmp/src/gui/dwi/render_frame.o +(285/505) [CC] tmp/core/formats/analyse.o +(28g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/tiff.cpp -o tmp/core/formats/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o @@ -3155,87 +3261,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/key_value.cpp -o tmp/core/file/key_value.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o -tmp/src/dwi/tractography/GT/mhsampler.o -(233/504) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp -(234/504) [CC] tmp/src/gui/mrview/tool/overlay_moc.o -(235/505) [CC] tmp/src/gui/opengl/gl.o -(236/505) [RCC] tmp/src/gui/mrview/icons.cpp -(237/505) [CC] tmp/core/mrtrix.o -(238/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o -(239/505) [CC] tmp/cmd/dcminfo.o -(240/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o -(241/505) [CC] tmp/cmd/mrmath.o -(242/504) [CC] tmp/src/gui/shapes/cube.o -(243/505) [CC] tmp/src/surface/mesh.o -(244/504) [CC] tmp/src/gui/dialog/dicom.o -(245/505) [CC] tmp/core/file/ofstream.o -(246/505) [CC] tmp/src/exec_version.o -(247/505) [CC] tmp/src/gui/dialog/list.o -(248/504) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o -(249/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp -(250/505) [CC] tmp/src/gui/dwi/render_frame_moc.o -(251/504) [CC] tmp/cmd/warpcorrect.o - -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: - -src/surface/mesh.cpp: In member function 'void MR::Surface::Mesh::save_stl(const string&, bool) const': -src/surface/mesh.cpp:660:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 80 equals destination size [-Wstringop-truncation] - strncpy (header, string.c_str(), 80); - ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ - - -(252/505) [CC] tmp/core/image_io/scratch.o -(253/505) [CC] tmp/src/dwi/shells.o -(254/505) [CC] tmp/cmd/dcmedit.o -(255/505) [CC] tmp/core/file/dicom/mapper.o -(256/504) [CC] tmp/core/formats/mgh.o -(257/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o -(258/504) [CC] tmp/cmd/fixelreorient.o -(259/504) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp -(260/504) [CC] tmp/cmd/tckgen.o -(261/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o -(262/505) [CC] tmp/core/axes.o -(263/504) [CC] tmp/core/file/tiff.o -(264/504) [CC] tmp/core/datatype.o -(265/505) [CC] tmp/core/header.o -(266/505) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o -(267/504) [CC] tmp/src/gui/shapes/halfsphere.o -(268/505) [CC] tmp/cmd/label2colour.o -(269/505) [MOC] tmp/src/gui/mrview/displayable_moc.cpp -(270/505) [CC] tmp/src/gui/mrview/displayable_moc.o -(271/504) [CC] tmp/cmd/mrtransform.o -(272/504) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o -(273/504) [CC] tmp/src/gui/mrview/combo_box_error_moc.o -(274/505) [CC] tmp/src/gui/mrview/colourmap_button_moc.o -(275/505) [CC] tmp/core/math/stats/permutation.o -(276/505) [CC] tmp/cmd/mrregister.o -(277/504) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o -(278/505) [CC] tmp/core/image_io/fetch_store.o -(279/505) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o -(280/505) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o -(281/505) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o -(282/504) [CC] tmp/src/dwi/tractography/properties.o -(283/505) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o -(284/504) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -(285/504) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o -(286/505) [CC] tmp/src/gui/dwi/render_frame.o -(287/505) [CC] tmp/core/formats/analyse.o -(288/505) [CC] tmp/core/algo/histogram.o -(289/505) [CC] tmp/cmd/transformcompose.o -(290/504) [CC] tmp/cmd/voxel2fixel.o -(291/504) [CC] tmp/cmd/fixelcorrespondence.o -(292/505) [CC] tmp/core/formats/tiff.o -(293/505) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o -(294/505) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o -(295/504) [CC] tmp/src/gui/mrview/icons.o -(296/504) [CC] tmp/cmd/fixel2voxel.o -(297/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o -(298/505) [CC] tmp/cmd/tckedit.o -(299/505) [CC] tmp/core/image_io/sparse.o -(300/504) [CC] tmp/core/file/key_value.o -(301/504) [CC] tmp/src/dwi/tractography/seeding/seeding.o -(302/505) [CC] tmp/cmd/tck2fixel.o -(30g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o @@ -3247,14 +3273,14 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/thread.cpp -o tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o moc src/gui/gui.h -o tmp/src/gui/gui_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/gui_moc.cpp -o tmp/src/gui/gui_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o @@ -3266,7 +3292,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrpad.cpp -o tmp/cmd/mrpad.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o @@ -3274,6 +3300,7 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp @@ -3287,67 +3314,69 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/bessel.cpp -o tmp/core/math/bessel.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o 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-pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse 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-ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o -3/505) [CC] tmp/src/dwi/tractography/seeding/dynamic.o -(304/505) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -(305/505) [CC] tmp/core/stride.o -(306/505) [CC] tmp/core/formats/nifti1_gz.o -(307/504) [CC] tmp/src/gui/mrview/colourmap.o -(308/504) [CC] tmp/core/file/mgh.o -(309/505) [CC] tmp/src/gui/lighting_dock.o -(310/504) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o -(311/504) [CC] tmp/cmd/dwi2fod.o -(312/505) [CC] tmp/cmd/tsfinfo.o -(313/505) [CC] tmp/src/dwi/tractography/resampling/arc.o -(314/505) [CC] tmp/src/gui/mrview/tool/connectome/selection.o -(315/504) [CC] tmp/cmd/dirmerge.o -(316/505) [CC] tmp/core/formats/ram.o -(317/505) [CC] tmp/core/thread.o -(318/505) [CC] tmp/core/file/nifti_utils.o -(319/504) [CC] tmp/src/gui/dialog/file.o -(320/504) [CC] tmp/cmd/tensor2metric.o -(321/505) [CC] tmp/cmd/voxel2mesh.o -(322/504) [CC] tmp/src/gui/mrview/tool/fixel/directory.o -(323/505) [MOC] tmp/src/gui/gui_moc.cpp -(324/505) [CC] tmp/src/gui/gui_moc.o -(325/505) [CC] tmp/cmd/warp2metric.o -(326/505) [CC] tmp/core/formats/pipe.o -(327/505) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o -(328/505) [CC] tmp/cmd/sh2peaks.o -(329/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o -(330/504) [CC] tmp/cmd/afdconnectivity.o -(331/504) [CC] tmp/core/formats/mrtrix_utils.o -(332/504) [CC] tmp/cmd/transformconvert.o -(333/504) [CC] tmp/cmd/mrpad.o -(334/505) [CC] tmp/cmd/shview.o -(335/505) [CC] tmp/src/stats/cfe.o -(336/505) [CC] tmp/cmd/mrinfo.o -(337/505) [CC] tmp/src/gui/mrview/mode/ortho.o -(338/504) [CC] tmp/cmd/mrcat.o -(339/504) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o -(340/505) [CC] tmp/cmd/label2mesh.o -(341/504) [CC] tmp/src/dwi/tractography/GT/internalenergy.o +6/505) [CC] tmp/core/algo/histogram.o +(287/505) [CC] tmp/cmd/transformcompose.o +(288/505) [CC] tmp/cmd/voxel2fixel.o +(289/505) [CC] tmp/cmd/fixelcorrespondence.o +(290/505) [CC] tmp/cmd/tsfvalidate.o +(291/505) [CC] tmp/core/formats/tiff.o +(292/505) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o +(293/505) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o +(294/505) [CC] tmp/src/gui/mrview/icons.o +(295/505) [CC] tmp/cmd/fixel2voxel.o +(296/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o +(297/505) [CC] tmp/cmd/tckedit.o +(298/505) [CC] tmp/core/image_io/sparse.o +(299/505) [CC] tmp/core/file/key_value.o +(300/505) [CC] tmp/src/dwi/tractography/seeding/seeding.o +(301/505) [CC] tmp/cmd/tck2fixel.o +(302/505) [CC] tmp/src/dwi/tractography/seeding/dynamic.o +(303/505) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp +(304/505) [CC] tmp/core/stride.o +(305/505) [CC] tmp/core/formats/nifti1_gz.o +(306/505) [CC] tmp/src/gui/mrview/colourmap.o +(307/505) [CC] tmp/core/file/mgh.o +(308/505) [CC] tmp/src/gui/lighting_dock.o +(309/505) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o +(310/505) [CC] tmp/cmd/dwi2fod.o +(311/505) [CC] tmp/cmd/tsfinfo.o +(312/505) [CC] tmp/src/dwi/tractography/resampling/arc.o +(313/505) [CC] tmp/src/gui/mrview/tool/connectome/selection.o +(314/505) [CC] tmp/cmd/tcksample.o +(315/505) [CC] tmp/core/formats/ram.o +(316/505) [CC] tmp/core/thread.o +(317/505) [CC] tmp/core/file/nifti_utils.o +(318/505) [CC] tmp/src/gui/dialog/file.o +(319/505) [CC] tmp/cmd/tensor2metric.o +(320/505) [CC] tmp/cmd/voxel2mesh.o +(321/505) [CC] tmp/core/image_io/scratch.o +(322/505) [MOC] tmp/src/gui/gui_moc.cpp +(323/505) [CC] tmp/src/gui/gui_moc.o +(324/505) [CC] tmp/cmd/warp2metric.o +(325/505) [CC] tmp/core/formats/pipe.o +(326/505) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o +(327/505) [CC] tmp/cmd/sh2peaks.o +(328/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o +(329/505) [CC] tmp/cmd/afdconnectivity.o +(330/505) [CC] tmp/core/formats/mrtrix_utils.o +(331/505) [CC] tmp/cmd/transformconvert.o +(332/505) [CC] tmp/cmd/mrpad.o +(333/505) [CC] tmp/cmd/fod2dec.o +(334/505) [CC] tmp/src/stats/cfe.o +(335/505) [CC] tmp/cmd/mrinfo.o +(336/505) [CC] tmp/src/gui/mrview/mode/ortho.o +(337/505) [CC] tmp/cmd/mrcat.o +(338/505) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o +(339/505) [CC] tmp/cmd/label2mesh.o +(340/505) [CC] tmp/src/dwi/tractography/GT/internalenergy.o +(341/505) [CC] tmp/core/file/dicom/study.o (342/505) [MOC] tmp/src/gui/color_button_moc.cpp (343/505) [CC] tmp/cmd/mraverageheader.o (344/505) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (345/505) [CC] tmp/src/dwi/tractography/connectome/connectome.o -(346/504) [CC] tmp/cmd/fixel2sh.o -(347/504) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o -(348/504) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o +(346/505) [CC] tmp/cmd/fixel2sh.o +(347/505) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o +(348/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o: @@ -3361,26 +3390,25 @@ (349/505) [CC] tmp/core/formats/nifti2.o (350/505) [CC] tmp/src/gui/opengl/font.o (351/505) [CC] tmp/cmd/dwinormalise.o -(352/504) [CC] tmp/src/surface/polygon.o -(353/504) [CC] tmp/cmd/shbasis.o +(352/505) [CC] tmp/src/surface/polygon.o +(353/505) [CC] tmp/cmd/shbasis.o (354/505) [CC] tmp/cmd/dwi2mask.o -(355/504) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o -(356/504) [CC] tmp/core/math/bessel.o -(357/504) [CC] tmp/src/gui/mrview/tool/connectome/edge.o -(358/504) [CC] tmp/src/gui/mrview/tool/odf/preview.o -(359/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o -(360/505) [CC] tmp/src/dwi/sdeconv/csd.o -(361/504) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o -(362/504) [CC] tmp/src/connectome/connectome.o -(363/504) [CC] tmp/src/gui/dialog/opengl.o -(364/505) [CC] tmp/cmd/warpconvert.o -(365/504) [CC] tmp/src/dwi/tractography/mapping/voxel.o -(366/505) [CC] tmp/cmd/dwi2tensor.o -(367/504) [CC] tmp/cmd/fixelcfestats.o -(368/504) [CC] tmp/core/file/dicom/image.o -(369/504) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o - -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="reg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o +(355/505) [CC] tmp/sg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/bessel.cpp -o tmp/core/math/bessel.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o @@ -3406,9 +3434,26 @@ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o -lease version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o: +g++ tmp/core/exception.o tmp/core/file/dicom/select_cmdline.o tmp/core/formats/analyse.o tmp/core/file/json_utils.o tmp/core/stride.o tmp/core/file/dicom/dict.o tmp/core/file/mmap.o tmp/core/formats/pipe.o tmp/core/formats/mrtrix_gz.o tmp/core/image_io/scratch.o tmp/core/math/stats/permutation.o tmp/core/formats/mri.o tmp/core/image_io/fetch_store.o tmp/core/image_io/pipe.o tmp/core/formats/nifti1_gz.o tmp/core/formats/mgh.o tmp/core/image_io/base.o tmp/core/math/average_space.o tmp/core/version.o tmp/core/formats/nifti2_gz.o tmp/core/math/stats/glm.o tmp/core/file/mgh.o tmp/core/file/dicom/element.o tmp/core/formats/mrtrix_utils.o tmp/core/formats/nifti1.o tmp/core/formats/xds.o tmp/core/file/dicom/mapper.o tmp/core/file/dicom/tree.o tmp/core/file/nifti2_utils.o tmp/core/algo/histogram.o tmp/core/formats/mrtrix.o tmp/core/axes.o tmp/core/signal_handler.o tmp/core/formats/ram.o tmp/core/formats/mgz.o tmp/core/math/bessel.o tmp/core/file/tiff.o tmp/core/datatype.o tmp/core/header.o tmp/core/image_io/ram.o tmp/core/image_io/mosaic.o tmp/core/adapter/reslice.o tmp/core/file/nifti1_utils.o tmp/core/image_io/sparse.o tmp/core/phase_encoding.o tmp/core/mrtrix.o tmp/core/file/name_parser.o tmp/core/image_io/tiff.o tmp/core/file/dicom/study.o tmp/core/file/key_value.o tmp/core/formats/nifti2.o tmp/core/app.o tmp/core/file/config.o tmp/core/thread.o tmp/core/formats/dicom.o tmp/core/image_io/gz.o tmp/core/progressbar.o tmp/core/file/nifti_utils.o tmp/core/bitset.o tmp/core/stats.o tmp/core/file/dicom/patient.o tmp/core/math/SH.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/list.o tmp/core/image_io/default.o tmp/core/file/ofstream.o tmp/core/formats/tiff.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/dicom/series.o tmp/core/file/dicom/image.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -o lib/libmrtrix.so +rc/gui/mrview/tool/roi_editor/model.o +(356/505) [CC] tmp/core/math/bessel.o +(357/505) [CC] tmp/src/gui/mrview/tool/connectome/edge.o +(358/505) [CC] tmp/src/gui/mrview/tool/odf/preview.o +(359/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o +(360/505) [CC] tmp/src/dwi/sdeconv/csd.o +(361/505) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o +(362/505) [CC] tmp/src/connectome/connectome.o +(363/505) [CC] tmp/src/gui/dialog/opengl.o +(364/505) [CC] tmp/core/formats/mrtrix_gz.o +(365/505) [CC] tmp/cmd/warpconvert.o +(366/505) [CC] tmp/src/dwi/tractography/mapping/voxel.o +(367/505) [CC] tmp/cmd/dwi2tensor.o +(368/505) [CC] tmp/core/file/dicom/image.o +(369/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o +(370/505) [CC] tmp/src/gui/mrview/mode/lightbox.o +(371/505) [CC] tmp/src/registration/transform/affine.o + +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o: In file included from core/file/dicom/image.cpp:22: ./core/file/dicom/csa_entry.h: In instantiation of 'void MR::File::Dicom::CSAEntry::get_float(Container&) const [with Container = Eigen::Matrix]': @@ -3428,50 +3473,42 @@ for (uint32_t m = nitems; m < v.size(); ++m) -(370/504) [CC] tmp/src/gui/mrview/mode/lightbox.o -(371/504) [CC] tmp/src/registration/transform/affine.o (372/505) [CC] tmp/cmd/dwidenoise.o -(373/504) [CC] tmp/src/gui/mrview/tool/view.o +(373/505) [CC] tmp/src/gui/mrview/tool/view.o (374/505) [CC] tmp/cmd/dirorder.o (375/505) [CC] tmp/src/gui/mrview/mode/base.o (376/505) [CC] tmp/src/dwi/tractography/resampling/resampling.o (377/505) [CC] tmp/core/image_io/base.o -(378/504) [CC] tmp/cmd/fod2fixel.o +(378/505) [CC] tmp/cmd/fod2fixel.o (379/505) [CC] tmp/cmd/amp2sh.o (380/505) [CC] tmp/cmd/mredit.o (381/505) [CC] tmp/src/stats/cluster.o (382/505) [CC] tmp/src/gui/mrview/tool/view_moc.o -(383/504) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp -(384/504) [CC] tmp/src/gui/mrview/adjust_button_moc.o +(383/505) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp +(384/505) [CC] tmp/src/gui/mrview/adjust_button_moc.o (385/505) [CC] tmp/cmd/vectorstats.o -(386/504) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp -(387/504) [CC] tmp/src/gui/mrview/spin_box_moc.o +(386/505) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp +(387/505) [CC] tmp/src/gui/mrview/spin_box_moc.o (388/505) [CC] tmp/cmd/connectome2tck.o -(389/504) [CC] tmp/cmd/peaks2amp.o -(390/504) [CC] tmp/core/image_io/gz.o -(391/504) [CC] tmp/core/progressbar.o +(389/505) [CC] tmp/cmd/peaks2amp.o +(390/505) [CC] tmp/core/image_io/gz.o +(391/505) [CC] tmp/core/progressbar.o (392/505) [MOC] tmp/src/gui/mrview/window_moc.cpp (393/505) [CC] tmp/src/gui/mrview/window_moc.o -(394/504) [CC] tmp/core/file/dicom/quick_scan.o -(395/504) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o -(396/504) [CC] tmp/src/gui/opengl/gl_core_3_3.o -(397/504) [CC] tmp/src/gui/color_button_moc.o - -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o: - -cmd/fixelcfestats.cpp: In function 'void run()': -cmd/fixelcfestats.cpp:182:43: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'MR::Stats::CFE::index_type' {aka 'unsigned int'} [-Wsign-compare] - for (mask.index(0) = 0; mask.index(0) != num_fixels; ++mask.index(0)) -g++ tmp/core/exception.o tmp/core/formats/mgz.o tmp/core/file/json_utils.o tmp/core/stride.o tmp/core/file/dicom/dict.o tmp/core/file/mmap.o tmp/core/formats/pipe.o tmp/core/formats/nifti1.o tmp/core/image_io/scratch.o tmp/core/math/stats/permutation.o tmp/core/formats/mri.o tmp/core/file/dicom/select_cmdline.o tmp/core/image_io/fetch_store.o tmp/core/image_io/pipe.o tmp/core/formats/nifti1_gz.o tmp/core/formats/mgh.o tmp/core/formats/nifti2.o tmp/core/math/average_space.o tmp/core/version.o tmp/core/math/stats/glm.o tmp/core/file/mgh.o tmp/core/file/dicom/element.o tmp/core/formats/mrtrix_utils.o tmp/core/formats/analyse.o tmp/core/algo/histogram.o tmp/core/formats/mrtrix_gz.o tmp/core/file/dicom/tree.o tmp/core/file/nifti2_utils.o tmp/core/formats/nifti2_gz.o tmp/core/axes.o tmp/core/signal_handler.o tmp/core/formats/ram.o tmp/core/math/bessel.o tmp/core/file/tiff.o tmp/core/file/nifti1_utils.o tmp/core/datatype.o tmp/core/header.o tmp/core/formats/mrtrix.o tmp/core/image_io/mosaic.o tmp/core/adapter/reslice.o tmp/core/formats/list.o tmp/core/image_io/sparse.o tmp/core/phase_encoding.o tmp/core/mrtrix.o tmp/core/file/name_parser.o tmp/core/image_io/tiff.o tmp/core/file/dicom/study.o tmp/core/file/key_value.o tmp/core/image_io/base.o tmp/core/app.o tmp/core/file/config.o tmp/core/thread.o tmp/core/formats/dicom.o tmp/core/image_io/gz.o tmp/core/file/dicom/mapper.o tmp/core/progressbar.o tmp/core/file/nifti_utils.o tmp/core/bitset.o tmp/core/stats.o tmp/core/file/dicom/patient.o tmp/core/math/SH.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/xds.o tmp/core/image_io/default.o tmp/core/file/ofstream.o tmp/core/formats/tiff.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/dicom/series.o tmp/core/file/dicom/image.o tmp/core/image_io/ram.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -o lib/libmrtrix.so +(394/505) [CC] tmp/core/file/dicom/quick_scan.o +(395/505) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o +(396/505) [LD] lib/libmrtrix.so +(39g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose g++ tmp/src/dwi/directions/file.o tmp/cmd/dirorder.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen -g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp -g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel -g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats g++ tmp/src/connectome/lut.o tmp/cmd/meshconvert.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert +g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad +g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity +g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch @@ -3483,32 +3520,36 @@ g++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold g++ tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/cmd/labelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert -g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc g++ tmp/cmd/mrcat.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc +g++ tmp/src/dwi/tractography/roi.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/properties.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/shapes/halfsphere.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/connectome/lut.o tmp/src/dwi/shells.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/base.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/dwi/tractography/rng.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/mode/slice.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/freesurfer.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/shapes/cube.o tmp/src/surface/mesh.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/color_button.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/surface/scalar.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 -L/usr/lib/i386-linux-gnu -L/usr/X11R6/lib -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/mrview g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert g++ tmp/cmd/mrcalc.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/smooth.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/cmd/meshfilter.o tmp/src/surface/mesh_multi.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter +g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter -g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/endpoints.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf g++ tmp/src/dwi/directions/file.o tmp/cmd/dirmerge.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge g++ tmp/src/stats/permtest.o tmp/cmd/vectorstats.o tmp/src/stats/permstack.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats +g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat +g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit g++ tmp/src/exec_version.o tmp/cmd/voxel2fixel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfsmooth.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2fixel.o tmp/src/exec_version.o tmp/src/dwi/directions/mask.o tmp/src/dwi/directions/set.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel +g++ tmp/src/dwi/gradient.o tmp/cmd/mrconvert.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirflip.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats g++ tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/renderer.o tmp/src/gui/dialog/list.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/shview/render_window.o tmp/src/gui/shview/icons.o tmp/src/dwi/directions/set.o tmp/src/gui/opengl/lighting.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/dicom.o tmp/src/gui/color_button.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/gui_moc.o tmp/src/dwi/directions/predefined.o tmp/src/gui/dialog/progress.o tmp/src/gui/projection.o tmp/cmd/shview.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/opengl/font.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/dialog/file.o tmp/src/gui/color_button_moc.o tmp/src/gui/shview/render_window_moc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 -L/usr/lib/i386-linux-gnu -L/usr/X11R6/lib -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/shview g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/stats/cfe.o tmp/src/stats/permtest.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixelcfestats.o tmp/src/stats/permstack.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats +g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/cmd/label2mesh.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh @@ -3518,6 +3559,7 @@ g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/cmd/tsfvalidate.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/amp2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response +g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/cmd/mesh2voxel.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/surface/filter/base.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/surface/algo/mesh2image.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/cmd/voxel2mesh.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckinfo.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert @@ -3525,8 +3567,6 @@ g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwiextract.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/tcksift.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift -g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise -g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit g++ tmp/src/dwi/gradient.o tmp/cmd/sh2response.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckglobal.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop @@ -3534,15 +3574,16 @@ g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult g++ tmp/cmd/dwinormalise.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwinormalise -g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck g++ tmp/cmd/mrresize.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrresize -g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat +g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/endpoints.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample g++ tmp/cmd/mrcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcrop +g++ tmp/src/registration/transform/initialiser_helpers.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo -g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/cmd/mesh2voxel.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/surface/filter/base.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/surface/algo/mesh2image.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel g++ tmp/cmd/dwi2tensor.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor +g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/tcksift2.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/SIFT/track_index_range.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 g++ tmp/src/dwi/directions/predefined.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2fod.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod +g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap g++ tmp/cmd/amp2sh.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask @@ -3550,7 +3591,6 @@ g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfdivide.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide g++ tmp/cmd/tensor2metric.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck -g++ tmp/src/dwi/tractography/roi.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/properties.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/shapes/halfsphere.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/connectome/lut.o tmp/src/dwi/shells.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/base.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/dwi/tractography/rng.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/mode/slice.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/freesurfer.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/shapes/cube.o tmp/src/surface/mesh.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/color_button.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/surface/scalar.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 -L/usr/lib/i386-linux-gnu -L/usr/X11R6/lib -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/mrview g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/connectome/matrix.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv @@ -3559,263 +3599,143 @@ g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform -g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tcksample.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckedit.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/editing/receiver.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit +g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/cmd/mrmetric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric g++ tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/stats/permstack.o tmp/src/stats/cluster.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrclusterstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient -g++ tmp/src/dwi/gradient.o tmp/cmd/mrconvert.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert -g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap -g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/cmd/mrmetric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric -g++ tmp/src/registration/transform/initialiser_helpers.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader -g++ tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform -g++ tmp/src/registration/linear.o tmp/src/exec_version.o tmp/src/registration/transform/affine.o tmp/src/registration/transform/initialiser.o tmp/src/registration/nonlinear.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrregister.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister - ~~~~~~~~~~~~~~^~~~~~~~~~~~~ +g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath + +ERROR: (177/505) [CC] tmp/cmd/mrregister.o + +g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o +failed with output -(398/505) [LD] lib/libmrtrix.so +virtual memory exhausted: Cannot allocate memory +7/505) [CC] tmp/src/gui/opengl/gl_core_3_3.o +(398/505) [CC] tmp/src/gui/color_button_moc.o (399/505) [LB] bin/transformcompose (400/505) [LB] bin/dirorder -(401/504) [LB] bin/dirgen -(404/504) [LB] bin/mrpad +(401/505) [LB] bin/dirgen (402/505) [LB] bin/peaks2amp +(403/505) [LB] bin/meshconvert +(404/505) [LB] bin/mrpad (405/505) [LB] bin/tck2fixel -(407/504) [LB] bin/mrstats -(403/504) [LB] bin/meshconvert -(406/504) [LB] bin/afdconnectivity +(406/505) [LB] bin/afdconnectivity +(407/505) [LB] bin/mrstats (408/505) [LB] bin/warpconvert (409/505) [LB] bin/sh2power -(410/504) [LB] bin/mrhistmatch -(411/504) [LB] bin/mrthreshold +(410/505) [LB] bin/mrhistmatch +(411/505) [LB] bin/mrthreshold (412/505) [LB] bin/fod2dec -(413/504) [LB] bin/mrdump +(413/505) [LB] bin/mrdump (414/505) [LB] bin/shbasis (415/505) [LB] bin/warp2metric (416/505) [LB] bin/fixel2sh -(417/504) [LB] bin/tsfthreshold -(418/504) [LB] bin/labelconvert -(419/505) [LB] bin/mrmath -(420/505) [LB] bin/dwi2adc -(421/505) [LB] bin/mrcat -(422/504) [LB] bin/tckconvert -(423/505) [LB] bin/fixel2voxel -(424/504) [LB] bin/transformcalc -(425/504) [LB] bin/maskfilter -(426/504) [LB] bin/warpinvert -(427/504) [LB] bin/mrcalc +(417/505) [LB] bin/tsfthreshold +(418/505) [LB] bin/labelconvert +(419/505) [LB] bin/dwi2adc +(420/505) [LB] bin/mrcat +(421/505) [LB] bin/tckconvert +(422/505) [LB] bin/fixel2voxel +(423/505) [LB] bin/transformcalc +(424/505) [LB] bin/mrview +(425/505) [LB] bin/maskfilter +(426/505) [LB] bin/warpinvert +(427/505) [LB] bin/mrcalc (428/505) [LB] bin/meshfilter -(429/504) [LB] bin/5tt2vis -(430/505) [LB] bin/mrfilter -(431/504) [LB] bin/tckresample +(429/505) [LB] bin/5ttcheck +(430/505) [LB] bin/5tt2vis +(431/505) [LB] bin/mrfilter (432/505) [LB] bin/maskdump -(433/504) [LB] bin/fixel2tsf +(433/505) [LB] bin/fixel2tsf (434/505) [LB] bin/dirmerge -(435/504) [LB] bin/vectorstats -(436/504) [LB] bin/voxel2fixel -(437/505) [LB] bin/mredit -(438/505) [LB] bin/tsfsmooth -(439/505) [LB] bin/fod2fixel -(440/505) [LB] bin/tckdfc -(441/504) [LB] bin/dirflip -(442/504) [LB] bin/tckstats -(443/505) [LB] bin/shview -(444/504) [LB] bin/fixelcfestats -(445/504) [LB] bin/fixelcorrespondence -(446/505) [LB] bin/5ttedit -(447/505) [LB] bin/label2mesh -(448/504) [LB] bin/dcmedit -(449/504) [LB] bin/tckgen -(450/505) [LB] bin/warpcorrect -(451/504) [LB] bin/mrdegibbs -(452/504) [LB] bin/tsfvalidate -(453/505) [LB] bin/amp2response -(454/505) [LB] bin/voxel2mesh -(455/504) [LB] bin/tckinfo -(456/504) [LB] bin/fixelconvert -(457/505) [LB] bin/label2colour -(458/504) [LB] bin/mtnormalise -(459/505) [LB] bin/dwiextract -(460/504) [LB] bin/tcksift -(461/504) [LB] bin/dwidenoise -(462/505) [LB] bin/dirsplit -(463/504) [LB] bin/sh2response -(464/505) [LB] bin/tckglobal -(465/505) [LB] bin/fixelcrop -(466/505) [LB] bin/transformconvert -(467/505) [LB] bin/mrhistogram -(468/505) [LB] bin/tsfmult -(469/504) [LB] bin/dwinormalise -(470/504) [LB] bin/5ttcheck -(471/505) [LB] bin/mrresize -(472/505) [LB] bin/dirstat -(473/504) [LB] bin/mrcrop -(474/505) [LB] bin/mrinfo -(475/505) [LB] bin/mesh2voxel -(476/504) [LB] bin/dwi2tensor -(477/504) [LB] bin/tcksift2 -(478/504) [LB] bin/dwi2fod -(479/505) [LB] bin/amp2sh -(480/505) [LB] bin/tsfinfo -(481/505) [LB] bin/mrcheckerboardmask -(482/504) [LB] bin/connectomestats -(483/504) [LB] bin/tsfdivide -(484/505) [LB] bin/tensor2metric -(485/505) [LB] bin/connectome2tck -(486/505) [LB] bin/mrview -(487/505) [LB] bin/tck2connectome -(488/504) [LB] bin/5tt2gmwmi -(489/505) [LB] bin/shconv -(490/505) [LB] bin/sh2peaks -(491/505) [LB] bin/sh2amp -(492/504) [LB] bin/dwi2mask -(493/505) [LB] bin/dcminfo -(494/504) [LB] bin/tcktransform -(495/505) [LB] bin/warpinit -(496/505) [LB] bin/tcksample -(497/505) [LB] bin/tckedit -(498/505) [LB] bin/mrclusterstats -(499/504) [LB] bin/fixelreorient -(500/504) [LB] bin/mrconvert -(501/504) [LB] bin/tckmap -(503/505) [LB] bin/mrmetric -(502/505) [LB] bin/mraverageheader -(504/504) [LB] bin/mrtransform -(505/505) [LB] bin/mrregister +(435/505) [LB] bin/vectorstats +(436/505) [LB] bin/dirstat +(437/505) [LB] bin/warpinit +(438/505) [LB] bin/voxel2fixel +(439/505) [LB] bin/mredit +(440/505) [LB] bin/tsfsmooth +(441/505) [LB] bin/fod2fixel +(442/505) [LB] bin/mrconvert +(443/505) [LB] bin/tckdfc +(444/505) [LB] bin/dirflip +(445/505) [LB] bin/tckstats +(446/505) [LB] bin/shview +(447/505) [LB] bin/fixelcfestats +(448/505) [LB] bin/dirsplit +(449/505) [LB] bin/fixelcorrespondence +(450/505) [LB] bin/5ttedit +(451/505) [LB] bin/label2mesh +(452/505) [LB] bin/dcmedit +(453/505) [LB] bin/tckgen +(454/505) [LB] bin/warpcorrect +(455/505) [LB] bin/mrdegibbs +(456/505) [LB] bin/tsfvalidate +(457/505) [LB] bin/amp2response +(458/505) [LB] bin/mesh2voxel +(459/505) [LB] bin/voxel2mesh +(460/505) [LB] bin/tckinfo +(461/505) [LB] bin/fixelconvert +(462/505) [LB] bin/label2colour +(463/505) [LB] bin/mtnormalise +(464/505) [LB] bin/dwiextract +(465/505) [LB] bin/tcksift +(466/505) [LB] bin/sh2response +(467/505) [LB] bin/tckglobal +(468/505) [LB] bin/fixelcrop +(469/505) [LB] bin/transformconvert +(470/505) [LB] bin/mrhistogram +(471/505) [LB] bin/tsfmult +(472/505) [LB] bin/dwinormalise +(473/505) [LB] bin/mrresize +(474/505) [LB] bin/tckresample +(475/505) [LB] bin/mrcrop +(476/505) [LB] bin/mraverageheader +(477/505) [LB] bin/mrinfo +(478/505) [LB] bin/dwi2tensor +(479/505) [LB] bin/dwidenoise +(480/505) [LB] bin/tcksift2 +(481/505) [LB] bin/dwi2fod +(482/505) [LB] bin/tckmap +(483/505) [LB] bin/amp2sh +(484/505) [LB] bin/tsfinfo +(485/505) [LB] bin/mrcheckerboardmask +(486/505) [LB] bin/connectomestats +(487/505) [LB] bin/tsfdivide +(488/505) [LB] bin/tensor2metric +(489/505) [LB] bin/connectome2tck +(490/505) [LB] bin/tck2connectome +(491/505) [LB] bin/5tt2gmwmi +(492/505) [LB] bin/shconv +(493/505) [LB] bin/sh2peaks +(494/505) [LB] bin/sh2amp +(495/505) [LB] bin/dwi2mask +(496/505) [LB] bin/dcminfo +(497/505) [LB] bin/tcktransform +(498/505) [LB] bin/tcksample +(499/505) [LB] bin/tckedit +(500/505) [LB] bin/mrmetric +(501/505) [LB] bin/mrclusterstats +(502/505) [LB] bin/fixelreorient +(503/505) [LB] bin/mrmath +make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1 make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' -./run_tests || { cat testing.log; exit 1; } -logging to "testing.log" -OK -building testing commands... OK -running "5tt2gmwmi"... 1 of 1 passed -running "5tt2vis"... 1 of 1 passed -running "5ttedit"... 1 of 1 passed -running "amp2sh"... 1 of 1 passed -running "dirgen"... 4 of 4 passed -running "dwi2adc"... 1 of 1 passed -running "dwi2fod"... 5 of 5 passed -running "dwi2mask"... 1 of 1 passed -running "dwi2tensor"... 8 of 8 passed -running "dwidenoise"... 6 of 6 passed -running "dwiextract"... 2 of 2 passed -running "fixel2sh"... 2 of 2 passed -running "fixel2tsf"... 1 of 1 passed -running "fixel2voxel"... 13 of 13 passed -running "fixelconvert"... 2 of 2 passed -running "fixelcorrespondence"... 1 of 1 passed -running "fixelcrop"... 1 of 1 passed -running "fixelreorient"... 1 of 1 passed -running "fod2dec"... 12 of 12 passed -running "fod2fixel"... 3 of 3 passed -running "label2colour"... 3 of 3 passed -running "label2mesh"... 2 of 2 passed -running "labelconvert"... 4 of 4 passed -running "maskfilter"... 9 of 9 passed -running "mesh2voxel"... 1 of 1 passed -running "meshconvert"... 10 of 10 passed -running "mrcalc"... 4 of 4 passed -running "mrcat"... 5 of 5 passed -running "mrconvert"... 11 of 11 passed -running "mrcrop"... 2 of 2 passed -running "mrdegibbs"... 1 of 1 passed -running "mrfilter"... 15 of 15 passed -running "mrhistmatch"... 2 of 2 passed -running "mrhistogram"... 0 of 0 passed -running "mrmath"... 4 of 4 passed -running "mrpad"... 4 of 4 passed -running "mrresize"... 8 of 8 passed -running "mrstats"... 2 of 2 passed -running "mrthreshold"... 9 of 9 passed -running "mrtransform"... 10 of 10 passed -running "peaks2amp"... 1 of 1 passed -running "population_template"... 2 of 2 passed -running "sh2amp"... 3 of 3 passed -running "sh2peaks"... 2 of 2 passed -running "sh2power"... 0 of 0 passed -running "sh2response"... 1 of 1 passed -running "shbasis"... 4 of 4 passed -running "shconv"... 2 of 2 passed -running "tck2connectome"... 3 of 3 passed -running "tckconvert"... 8 of 8 passed -running "tckgen"... 14 of 14 passed -running "tckmap"... 4 of 4 passed -running "tckresample"... 5 of 5 passed -running "tcksample"... 8 of 8 passed -running "tcksift"... 1 of 1 passed -running "tcksift2"... 1 of 1 passed -running "tcktransform"... 1 of 1 passed -running "tensor2metric"... 8 of 8 passed -running "transformcalc"... 5 of 5 passed -running "transformcompose"... 4 of 4 passed -running "transformconvert"... 4 of 4 passed -running "tsfdivide"... 1 of 1 passed -running "tsfmult"... 1 of 1 passed -running "tsfsmooth"... 1 of 1 passed -running "tsfthreshold"... 2 of 2 passed -running "voxel2fixel"... 1 of 1 passed -running "warp2metric"... 3 of 3 passed -running "warpcorrect"... 1 of 1 passed -running "warpinit"... 1 of 1 passed -make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' - dh_testroot - dh_prep - debian/rules override_dh_install -make[1]: Entering directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' -dh_install -# .pyc files get generated, so we remove all the .pyc/.pyo etc -find debian -iname *.py? -delete -make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' - dh_installdocs - dh_installchangelogs - dh_installman - dh_perl - debian/rules override_dh_link -make[1]: Entering directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' -cp debian/mrtrix3.links.in debian/mrtrix3.links -: # Generate symlinks for all the mr* commands -for f in debian/mrtrix3/usr/lib/mrtrix3/bin/mrview; do \ - bn=$(basename $f); \ - echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ - echo "/usr/share/man/man1/mrtrix.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ -done -echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links -echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links -dh_link -make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' - dh_strip_nondeterminism - debian/rules override_dh_compress -make[1]: Entering directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' -dh_compress -X.html -make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' - dh_fixperms - dh_missing - dh_strip - dh_makeshlibs - debian/rules override_dh_shlibdeps -make[1]: Entering directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' -dh_shlibdeps -l /build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2/lib -make[1]: Leaving directory '/build/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' - dh_installdeb - dh_gencontrol - dh_md5sums - dh_builddeb -dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_i386.deb'. -dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0~rc3+git135-g2b8e7d0c2-3_i386.deb'. -dpkg-deb: building package 'mrtrix3-doc' in '../mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-3_all.deb'. - dpkg-genbuildinfo --build=binary - dpkg-genchanges --build=binary >../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3_i386.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload +make: *** [debian/rules:33: binary] Error 2 +dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 I: copying local configuration +E: Failed autobuilding of package +I: user script /srv/workspace/pbuilder/9078/tmp/hooks/C01_cleanup starting +debug output: disk usage on i-capture-the-hostname at Wed Sep 1 11:45:11 UTC 2021 +Filesystem Size Used Avail Use% Mounted on +tmpfs 4.0G 0 4.0G 0% /dev/shm + +I: user script /srv/workspace/pbuilder/9078/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/60333 and its subdirectories -I: Current time: Tue Oct 4 05:17:48 -12 2022 -I: pbuilder-time-stamp: 1664903868 +I: removing directory /srv/workspace/pbuilder/9078 and its subdirectories