Diff of the two buildlogs:

--
--- b1/build.log	2020-04-12 05:29:49.565378009 +0000
+++ b2/build.log	2020-04-12 05:40:18.241190328 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Fri May 14 23:52:10 -12 2021
-I: pbuilder-time-stamp: 1621079530
+I: Current time: Sun Apr 12 19:29:53 +14 2020
+I: pbuilder-time-stamp: 1586669393
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
 I: copying local configuration
@@ -18,7 +18,7 @@
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
 gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Sat Jun 23 06:21:21 2018 -12
+gpgv: Signature made Sun Jun 24 08:21:21 2018 +14
 gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
 gpgv: Can't check signature: No public key
 dpkg-source: warning: failed to verify signature on ./libpll_0.3.2-2.dsc
@@ -27,6 +27,18 @@
 dpkg-source: info: unpacking libpll_0.3.2-2.debian.tar.xz
 I: using fakeroot in build.
 I: Installing the build-deps
+I: user script /srv/workspace/pbuilder/20006/tmp/hooks/D01_modify_environment starting
+disorder-fs debug: Running on profitbricks-build2-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/20006/tmp/hooks/D01_modify_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -108,7 +120,7 @@
 Get: 36 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
 Get: 37 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB]
 Get: 38 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB]
-Fetched 21.9 MB in 0s (65.0 MB/s)
+Fetched 21.9 MB in 4s (6093 kB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libbsd0:i386.
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(Reading database ... 19231 files and directories currently installed.)
@@ -284,7 +296,7 @@
 fakeroot is already the newest version (1.23-1).
 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
+I: Running cd /build/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
 dpkg-buildpackage: info: source package libpll
 dpkg-buildpackage: info: source version 0.3.2-2
 dpkg-buildpackage: info: source distribution unstable
@@ -462,204 +474,204 @@
 
 make[1]: Leaving directory '/build/libpll-0.3.2'
    dh_auto_build
-	make -j18
+	make -j10
 make[1]: Entering directory '/build/libpll-0.3.2'
 make  all-recursive
 make[2]: Entering directory '/build/libpll-0.3.2'
 Making all in src
 make[3]: Entering directory '/build/libpll-0.3.2/src'
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-rtree.lo `test -f 'rtree.c' || echo './'`rtree.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-partials.lo `test -f 'partials.c' || echo './'`partials.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_moves.lo `test -f 'utree_moves.c' || echo './'`utree_moves.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_svg.lo `test -f 'utree_svg.c' || echo './'`utree_svg.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parsimony.lo `test -f 'parsimony.c' || echo './'`parsimony.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_derivatives.lo `test -f 'core_derivatives.c' || echo './'`core_derivatives.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_partials.lo `test -f 'core_partials.c' || echo './'`core_partials.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-rtree.lo `test -f 'rtree.c' || echo './'`rtree.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c  -fPIC -DPIC -o .libs/libpll_la-gamma.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c  -fPIC -DPIC -o .libs/libpll_la-list.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c  -fPIC -DPIC -o .libs/libpll_la-fasta.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c  -fPIC -DPIC -o .libs/libpll_la-pll.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c  -fPIC -DPIC -o .libs/libpll_la-output.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c  -fPIC -DPIC -o .libs/libpll_la-maps.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c  -fPIC -DPIC -o .libs/libpll_la-likelihood.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c  -fPIC -DPIC -o .libs/libpll_la-models.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c  -fPIC -DPIC -o .libs/libpll_la-output.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c  -fPIC -DPIC -o .libs/libpll_la-gamma.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c  -fPIC -DPIC -o .libs/libpll_la-utree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c  -fPIC -DPIC -o .libs/libpll_la-partials.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c  -fPIC -DPIC -o .libs/libpll_la-rtree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c  -fPIC -DPIC -o .libs/libpll_la-core_derivatives.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c  -fPIC -DPIC -o .libs/libpll_la-list.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -o libpll_la-output.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -o libpll_la-maps.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -o libpll_la-models.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -o libpll_la-rtree.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -o libpll_la-pll.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -o libpll_la-utree.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-partials.lo `test -f 'partials.c' || echo './'`partials.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_moves.lo `test -f 'utree_moves.c' || echo './'`utree_moves.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_svg.lo `test -f 'utree_svg.c' || echo './'`utree_svg.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parsimony.lo `test -f 'parsimony.c' || echo './'`parsimony.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c  -fPIC -DPIC -o .libs/libpll_la-derivatives.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c  -fPIC -DPIC -o .libs/libpll_la-core_partials.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c  -fPIC -DPIC -o .libs/libpll_la-partials.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c  -fPIC -DPIC -o .libs/libpll_la-utree_moves.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c  -fPIC -DPIC -o .libs/libpll_la-compress.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c  -fPIC -DPIC -o .libs/libpll_la-parsimony.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c  -fPIC -DPIC -o .libs/libpll_la-pll.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c  -fPIC -DPIC -o .libs/libpll_la-likelihood.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c  -fPIC -DPIC -o .libs/libpll_la-utree_svg.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c  -fPIC -DPIC -o .libs/libpll_la-fasta.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -o libpll_la-maps.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -o libpll_la-output.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c  -fPIC -DPIC -o .libs/libpll_la-compress.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_derivatives.lo `test -f 'core_derivatives.c' || echo './'`core_derivatives.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c  -fPIC -DPIC -o .libs/libpll_la-core_derivatives.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_partials.lo `test -f 'core_partials.c' || echo './'`core_partials.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_pmatrix.lo `test -f 'core_pmatrix.c' || echo './'`core_pmatrix.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c  -fPIC -DPIC -o .libs/libpll_la-core_partials.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c  -fPIC -DPIC -o .libs/libpll_la-core_pmatrix.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c  -fPIC -DPIC -o .libs/libpll_la-core_likelihood.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -o libpll_la-compress.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -o libpll_la-derivatives.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -o libpll_la-parsimony.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -o libpll_la-core_pmatrix.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c -o libpll_la-utree_svg.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -o libpll_la-utree_moves.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -o libpll_la-compress.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -o libpll_la-parsimony.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -o libpll_la-rtree.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -o libpll_la-core_derivatives.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -o libpll_la-utree.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_pmatrix.lo `test -f 'core_pmatrix.c' || echo './'`core_pmatrix.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -o libpll_la-pll.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -o libpll_la-models.o >/dev/null 2>&1
-/bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` 
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c  -fPIC -DPIC -o .libs/libpll_la-core_pmatrix.o
-/bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` 
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c  -fPIC -DPIC -o .libs/libpll_la-core_likelihood.o
-/build/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc]
- %error-verbose
- ^~~~~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: deprecated directive, use '%define parse.error verbose' [-Wdeprecated]
- %error-verbose
- ^~~~~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { pll_utree_graph_destroy($$,NULL); } subtree
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_utree.y:162.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { free($$); } STRING
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_utree.y:163.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { free($$); } NUMBER
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { free($$); } label
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc]
- %error-verbose
- ^~~~~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: deprecated directive, use '%define parse.error verbose' [-Wdeprecated]
- %error-verbose
- ^~~~~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_rtree.y:104.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { pll_rtree_graph_destroy($$,NULL); } subtree
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_rtree.y:105.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { free($$); } STRING
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_rtree.y:106.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { free($$); } NUMBER
- ^~~~~~~~~~~
-/build/libpll-0.3.2/src/parse_rtree.y:107.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc]
- %destructor { free($$); } label
- ^~~~~~~~~~~
-/bin/bash ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_utree"` -o lex.yy.c 
-/build/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
-/build/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
-updating parse_utree.h
-/bin/bash ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c 
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c
-updating parse_rtree.h
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c
+/bin/sh ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` 
+/bin/sh ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` 
+/bin/sh ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_utree"` -o lex.yy.c 
+/bin/sh ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c 
+/build/libpll-0.3.2/src/parse_rtree.y:102.1/build/libpll-0.3.2/src/parse_utree.y-14: :159warning: .1POSIX Yacc does not support %error-verbose-14 [-Wyacc]: warning: 
+POSIX Yacc does not support %error-verbose [-Wyacc]
+ %error-ve rb%oesrer
+or- v^e~r~~b~o~s~e~
+~~ ~^~~~~~
+~~~~~~~~~~~
+/build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: /build/libpll-0.3.2/src/parse_utree.ydeprecated directive, use '%define parse.error verbose':159 [-Wdeprecated].1
+-14: warning: deprecated directive, use '%define parse.error verbose' [-Wdeprecated]
+ % e%rerrorro-rv-evrebrobsoes
+e
+ ^ ~^~~~~~~~~~~~~~~~~~~~~~~~~
+~
+/build/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: /build/libpll-0.3.2/src/parse_rtree.yPOSIX Yacc does not support %destructor:104 [-Wyacc]
+.1-11 : %warning: dPOSIX Yacc does not support %destructores [-Wyacc]t
+ru c%tdoers t{r upcltlo_ru t{r epel_lg_rratprhe_ede_sgtrraopy(h$_$d,eNsUtrLoLy)(;$ $}, NsUuLbLt)r;e e}
+ s u^b~t~r~e~e~
+~~ ~^~~~~
+~~~~~~~~
+/build/libpll-0.3.2/src/parse_utree.y:162.1-11: /build/libpll-0.3.2/src/parse_rtree.ywarning: :105POSIX Yacc does not support %destructor.1 [-Wyacc]-11
+:  warning: %dPOSIX Yacc does not support %destructores [-Wyacc]t
+ru c%tdoers t{r ufcrteore ({$ $fr)e;e (}$ $S)T;R IN}G 
+ST R^I~N~G~
+~~ ~^~~~~~~~~
+~~~~~~
+/build/libpll-0.3.2/src/parse_utree.y:163.1/build/libpll-0.3.2/src/parse_rtree.y-11: :106warning: .1POSIX Yacc does not support %destructor-11 [-Wyacc]: 
+warning:  POSIX Yacc does not support %destructor%d [-Wyacc]e
+st r%udcetsotrr u{c tforre e{( $f$r)e;e (}$ $N)U;M B}E RNU
+MB E^R
+~ ~^~~~~~~~~~~~~~~~~
+~~
+/build/libpll-0.3.2/src/parse_utree.y/build/libpll-0.3.2/src/parse_rtree.y:164:107.1.1-11-11: : warning: warning: POSIX Yacc does not support %destructorPOSIX Yacc does not support %destructor [-Wyacc] [-Wyacc]
+
+  %%ddeessttrruuccttoorr  {{  ffrreeee(($$$$));;  }}  llaabbeell
+
+  ^^~~~~~~~~~~~~~~~~~~~~
+
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c  -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c  -fPIC -DPIC -o .libs/libpll_la-stepwise.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_partials_avx2.lo `test -f 'core_partials_avx2.c' || echo './'`core_partials_avx2.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c  -fPIC -DPIC -o .libs/libpll_la-random.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_derivatives_avx2.lo `test -f 'core_derivatives_avx2.c' || echo './'`core_derivatives_avx2.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c  -fPIC -DPIC -o .libs/libpll_la-stepwise.o
+/build/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
+/build/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
+updating parse_rtree.h
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c
+updating parse_utree.h
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c  -fPIC -DPIC -o .libs/libpll_la-phylip.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c  -fPIC -DPIC -o .libs/libpll_la-hardware.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_partials_avx2.lo `test -f 'core_partials_avx2.c' || echo './'`core_partials_avx2.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_derivatives_avx2.lo `test -f 'core_derivatives_avx2.c' || echo './'`core_derivatives_avx2.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_partials_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_partials_avx2.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_pmatrix_avx2.lo `test -f 'core_pmatrix_avx2.c' || echo './'`core_pmatrix_avx2.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_likelihood_avx2.lo `test -f 'core_likelihood_avx2.c' || echo './'`core_likelihood_avx2.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_derivatives_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_derivatives_avx2.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_pmatrix_avx2.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-fast_parsimony_avx2.lo `test -f 'fast_parsimony_avx2.c' || echo './'`fast_parsimony_avx2.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_likelihood_avx2.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-fast_parsimony_avx2.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_partials_avx.lo `test -f 'core_partials_avx.c' || echo './'`core_partials_avx.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_partials_avx.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -o libpll_la-core_pmatrix.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_derivatives_avx.lo `test -f 'core_derivatives_avx.c' || echo './'`core_derivatives_avx.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -o libpll_la-hardware.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -o libpll_la-random.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_derivatives_avx.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_pmatrix_avx.lo `test -f 'core_pmatrix_avx.c' || echo './'`core_pmatrix_avx.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_likelihood_avx.lo `test -f 'core_likelihood_avx.c' || echo './'`core_likelihood_avx.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_pmatrix_avx.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -o libpll_la-stepwise.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_likelihood_avx.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c -o libsimd_avx2_la-core_pmatrix_avx2.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c -o libsimd_avx2_la-fast_parsimony_avx2.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-fast_parsimony_avx.lo `test -f 'fast_parsimony_avx.c' || echo './'`fast_parsimony_avx.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_partials_sse.lo `test -f 'core_partials_sse.c' || echo './'`core_partials_sse.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-fast_parsimony_avx.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -o libpll_la-hardware.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_pmatrix_avx2.lo `test -f 'core_pmatrix_avx2.c' || echo './'`core_pmatrix_avx2.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-core_likelihood_avx2.lo `test -f 'core_likelihood_avx2.c' || echo './'`core_likelihood_avx2.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -o libpll_la-fast_parsimony.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c -o libsimd_avx2_la-fast_parsimony_avx2.lo `test -f 'fast_parsimony_avx2.c' || echo './'`fast_parsimony_avx2.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_likelihood_avx2.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-core_pmatrix_avx2.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c  -fPIC -DPIC -o .libs/libsimd_avx2_la-fast_parsimony_avx2.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_partials_avx2.c -o libsimd_avx2_la-core_partials_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_derivatives_avx2.c -o libsimd_avx2_la-core_derivatives_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c fast_parsimony_avx2.c -o libsimd_avx2_la-fast_parsimony_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_pmatrix_avx2.c -o libsimd_avx2_la-core_pmatrix_avx2.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_partials_avx.lo `test -f 'core_partials_avx.c' || echo './'`core_partials_avx.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_derivatives_avx.lo `test -f 'core_derivatives_avx.c' || echo './'`core_derivatives_avx.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_pmatrix_avx.lo `test -f 'core_pmatrix_avx.c' || echo './'`core_pmatrix_avx.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-core_likelihood_avx.lo `test -f 'core_likelihood_avx.c' || echo './'`core_likelihood_avx.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c -o libsimd_avx_la-fast_parsimony_avx.lo `test -f 'fast_parsimony_avx.c' || echo './'`fast_parsimony_avx.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_partials_sse.lo `test -f 'core_partials_sse.c' || echo './'`core_partials_sse.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c -o libsimd_avx2_la-core_likelihood_avx2.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_partials_avx.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_derivatives_avx.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_partials_sse.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_derivatives_sse.lo `test -f 'core_derivatives_sse.c' || echo './'`core_derivatives_sse.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-fast_parsimony_avx.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_likelihood_avx.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c  -fPIC -DPIC -o .libs/libsimd_avx_la-core_pmatrix_avx.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_derivatives_sse.lo `test -f 'core_derivatives_sse.c' || echo './'`core_derivatives_sse.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_derivatives_sse.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c -o libsimd_avx2_la-core_likelihood_avx2.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_likelihood_sse.lo `test -f 'core_likelihood_sse.c' || echo './'`core_likelihood_sse.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_pmatrix_sse.lo `test -f 'core_pmatrix_sse.c' || echo './'`core_pmatrix_sse.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_likelihood_sse.lo `test -f 'core_likelihood_sse.c' || echo './'`core_likelihood_sse.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_pmatrix_sse.lo `test -f 'core_pmatrix_sse.c' || echo './'`core_pmatrix_sse.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -o libsimd_avx_la-core_pmatrix_avx.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_likelihood_sse.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-core_pmatrix_sse.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_derivatives_avx2.c -o libsimd_avx2_la-core_derivatives_avx2.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test -f 'parse_utree.c' || echo './'`parse_utree.c
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_rtree.lo `test -f 'parse_rtree.c' || echo './'`parse_rtree.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -o libsimd_avx_la-core_pmatrix_avx.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c  -fPIC -DPIC -o .libs/libsimd_sse_la-fast_parsimony_sse.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c  -fPIC -DPIC -o .libs/libpll_la-parse_utree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c  -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c -o libsimd_avx_la-core_partials_avx.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c  -fPIC -DPIC -o .libs/libpll_la-lex_utree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c  -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -o libsimd_sse_la-core_partials_sse.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c -o libsimd_avx_la-core_partials_avx.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c -o libsimd_avx_la-core_derivatives_avx.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -o libsimd_sse_la-fast_parsimony_sse.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la  libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo  -lm 
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test -f 'parse_utree.c' || echo './'`parse_utree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_rtree.lo `test -f 'parse_rtree.c' || echo './'`parse_rtree.c
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c  -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o
+/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c  -fPIC -DPIC -o .libs/libpll_la-lex_utree.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c  -fPIC -DPIC -o .libs/libpll_la-parse_utree.o
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c  -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -o libsimd_sse_la-core_likelihood_sse.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la  libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo  -lm 
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la  libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo  -lm 
 libtool: link: ar cru .libs/libsimd_avx2.a .libs/libsimd_avx2_la-core_partials_avx2.o .libs/libsimd_avx2_la-core_derivatives_avx2.o .libs/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libsimd_avx2_la-core_likelihood_avx2.o .libs/libsimd_avx2_la-fast_parsimony_avx2.o 
-ar: `u' modifier ignored since `D' is the default (see `U')
+libtool: link: ar cru .libs/libsimd_avx.a .libs/libsimd_avx_la-core_partials_avx.o .libs/libsimd_avx_la-core_derivatives_avx.o .libs/libsimd_avx_la-core_pmatrix_avx.o .libs/libsimd_avx_la-core_likelihood_avx.o .libs/libsimd_avx_la-fast_parsimony_avx.o 
+ar: ar: `u' modifier ignored since `D' is the default (see `U')
+`u' modifier ignored since `D' is the default (see `U')
 libtool: link: ranlib .libs/libsimd_avx2.a
+libtool: link: ranlib .libs/libsimd_avx.a
 libtool: link: ( cd ".libs" && rm -f "libsimd_avx2.la" && ln -s "../libsimd_avx2.la" "libsimd_avx2.la" )
+libtool: link: ( cd ".libs" && rm -f "libsimd_avx.la" && ln -s "../libsimd_avx.la" "libsimd_avx.la" )
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la  libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo  -lm 
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1
 libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1
-libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g  -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la  libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo  -lm 
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g  -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la  libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo  -lm 
-libtool: link: ar cru .libs/libsimd_avx.a .libs/libsimd_avx_la-core_partials_avx.o .libs/libsimd_avx_la-core_derivatives_avx.o .libs/libsimd_avx_la-core_pmatrix_avx.o .libs/libsimd_avx_la-core_likelihood_avx.o .libs/libsimd_avx_la-fast_parsimony_avx.o 
-ar: `u' modifier ignored since `D' is the default (see `U')
-libtool: link: ranlib .libs/libsimd_avx.a
 libtool: link: ar cru .libs/libsimd_sse.a .libs/libsimd_sse_la-core_partials_sse.o .libs/libsimd_sse_la-core_derivatives_sse.o .libs/libsimd_sse_la-core_likelihood_sse.o .libs/libsimd_sse_la-core_pmatrix_sse.o .libs/libsimd_sse_la-fast_parsimony_sse.o 
 ar: `u' modifier ignored since `D' is the default (see `U')
 libtool: link: ranlib .libs/libsimd_sse.a
-libtool: link: ( cd ".libs" && rm -f "libsimd_avx.la" && ln -s "../libsimd_avx.la" "libsimd_avx.la" )
 libtool: link: ( cd ".libs" && rm -f "libsimd_sse.la" && ln -s "../libsimd_sse.la" "libsimd_sse.la" )
-/bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/i386-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm 
+libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1
+/bin/sh ../libtool  --tag=CC   --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/i386-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm 
 libtool: link: gcc -shared  -fPIC -DPIC  .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o  -Wl,--whole-archive ./.libs/libsimd_avx2.a ./.libs/libsimd_avx.a ./.libs/libsimd_sse.a -Wl,--no-whole-archive  -lm  -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0
 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0")
 libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so")
@@ -685,7 +697,7 @@
 make[2]: Leaving directory '/build/libpll-0.3.2'
 make[1]: Leaving directory '/build/libpll-0.3.2'
    dh_auto_test
-	make -j18 check VERBOSE=1
+	make -j10 check VERBOSE=1
 make[1]: Entering directory '/build/libpll-0.3.2'
 Making check in src
 make[2]: Entering directory '/build/libpll-0.3.2/src'
@@ -714,7 +726,7 @@
 make[2]: Entering directory '/build/libpll-0.3.2/src'
 make[3]: Entering directory '/build/libpll-0.3.2/src'
  /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu'
- /bin/bash ../libtool   --mode=install /usr/bin/install -c   libpll.la '/build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu'
+ /bin/sh ../libtool   --mode=install /usr/bin/install -c   libpll.la '/build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu'
 libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.so.0.0.0
 libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; })
 libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; })
@@ -818,21 +830,23 @@
 dpkg-gencontrol: warning: Depends field of package libpll-dev: substitution variable ${shlibs:Depends} used, but is not defined
    dh_md5sums
    dh_builddeb
+dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-2_i386.deb'.
 dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-2_i386.deb'.
 dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-2_i386.deb'.
-dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-2_i386.deb'.
  dpkg-genbuildinfo --build=binary
  dpkg-genchanges --build=binary >../libpll_0.3.2-2_i386.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
  dpkg-source --after-build .
 dpkg-buildpackage: info: binary-only upload (no source included)
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/20006/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/20006/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/56571 and its subdirectories
-I: Current time: Fri May 14 23:52:47 -12 2021
-I: pbuilder-time-stamp: 1621079567
+I: removing directory /srv/workspace/pbuilder/20006 and its subdirectories
+I: Current time: Sun Apr 12 19:40:17 +14 2020
+I: pbuilder-time-stamp: 1586670017