Diff of the two buildlogs: -- --- b1/build.log 2020-04-04 11:29:25.937066729 +0000 +++ b2/build.log 2020-04-04 11:30:19.604027578 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Apr 3 23:22:11 -12 2020 -I: pbuilder-time-stamp: 1585999331 +I: Current time: Sat May 8 07:52:26 +14 2021 +I: pbuilder-time-stamp: 1620409946 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sat Mar 16 06:11:34 2019 -12 +gpgv: Signature made Sun Mar 17 08:11:34 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,6 +30,18 @@ dpkg-source: info: applying unforce-cxxflags.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/12446/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12446/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -134,7 +146,7 @@ Get: 61 http://deb.debian.org/debian buster/main i386 libbpp-core-dev i386 2.4.1-3 [998 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libbpp-seq12 i386 2.4.1-3 [539 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libbpp-seq-dev i386 2.4.1-3 [794 kB] -Fetched 32.2 MB in 5s (6233 kB/s) +Fetched 32.2 MB in 0s (66.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -410,7 +422,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libbpp-seq-omics-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/libbpp-seq-omics-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.1-3 dpkg-buildpackage: info: source distribution unstable @@ -452,7 +464,7 @@ -- Build files have been written to: /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu dh_auto_build - cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libbpp-seq-omics-2.4.1 -B/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -465,169 +477,169 @@ make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-seq-omics-static +Scanning dependencies of target bpp-seq-omics-shared +make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build +make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -[ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o +make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o +[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o +[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o +[ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o +[ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o +[ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp -[ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -Scanning dependencies of target bpp-seq-omics-shared -make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp +[ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp +[ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o +[ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o +[ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o +[ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build -[ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp -make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +[ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o +[ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o +[ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeature.cpp -[ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp +[ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o +[ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Fastq.cpp -[ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -[ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp -[ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp +[ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp +[ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp -[ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeature.cpp -[ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp -[ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp -[ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp -[ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -[ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp -[ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Fastq.cpp -[ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp -[ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp -[ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp -[ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp -[ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o +[ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp +[ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp -[ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp -[ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o +[ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp +[ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp -[ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp -[ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp -[ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp -[ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp -[ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/IterationListener.cpp -[ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o +[ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp +[ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp -[ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -[ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o +[ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp +[ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp +[ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp -[ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafIterator.cpp -[ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafParser.cpp -[ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafSequence.cpp -[ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o +[ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp +[ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp -[ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o +[ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp +[ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/IterationListener.cpp +[ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c 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/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafSequence.cpp +[ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafStatistics.cpp +[ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd 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CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp -[ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp -[ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp +[ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp -[ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -[ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o +[ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp +[ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp +[ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c 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CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp -[ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o +[ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp +[ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp +[ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp -[ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o +[ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp +[ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp -[ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o +[ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp +[ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp -[ 86%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o +[ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp -[ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o +[ 80%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp +[ 81%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp +[ 82%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp -[ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o +[ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp +[ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp -[ 90%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o +[ 86%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp +[ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp +[ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp +[ 90%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp -[ 92%] Linking CXX static library libbpp-seq-omics.a +[ 92%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp +[ 93%] Linking CXX static library libbpp-seq-omics.a cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq-omics.a CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -[ 93%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp /usr/bin/ranlib libbpp-seq-omics.a [ 95%] Linking CXX shared library libbpp-seq-omics.so cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1 @@ -640,14 +652,14 @@ make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= Scanning dependencies of target test_fastq make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build -Scanning dependencies of target test_gff make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +Scanning dependencies of target test_gff make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' @@ -669,19 +681,19 @@ /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' dh_auto_test - cd obj-i686-linux-gnu && make -j10 test ARGS\+=-j10 + cd obj-i686-linux-gnu && make -j18 test ARGS\+=-j18 make[1]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j10 +/usr/bin/ctest --force-new-ctest-process -j18 Test project /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu Start 1: test_fastq Start 2: test_gff -1/2 Test #1: test_fastq ....................... Passed 0.14 sec -2/2 Test #2: test_gff ......................... Passed 0.11 sec +1/2 Test #1: test_fastq ....................... Passed 0.00 sec +2/2 Test #2: test_gff ......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 2 -Total Test time (real) = 0.19 sec +Total Test time (real) = 0.01 sec make[1]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -689,7 +701,7 @@ dh_testroot dh_prep dh_auto_install - cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/libbpp-seq-omics-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/libbpp-seq-omics-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libbpp-seq-omics-2.4.1 -B/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -698,20 +710,20 @@ make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build +make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-omics-shared.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-omics-static.dir/build'. make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-omics-static.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/bpp-seq-omics-shared.dir/build'. make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -[ 62%] Built target bpp-seq-omics-static +[ 95%] Built target bpp-seq-omics-static [ 95%] Built target bpp-seq-omics-shared make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend @@ -720,16 +732,16 @@ make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build -make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build -make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'test/CMakeFiles/test_fastq.dir/build'. make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_gff.dir/build'. make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' -[100%] Built target test_gff +make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'test/CMakeFiles/test_fastq.dir/build'. +make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' +[ 97%] Built target test_gff [100%] Built target test_fastq make[2]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles 0 @@ -748,54 +760,54 @@ -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/libbpp-seq-omics.so -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h --- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h +-- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-i686-linux-gnu' @@ -842,21 +854,23 @@ dpkg-gencontrol: warning: package libbpp-seq-omics-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in '../libbpp-seq-omics3-dbgsym_2.4.1-3_i386.deb'. dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.1-3_i386.deb'. dpkg-deb: building package 'libbpp-seq-omics3' in '../libbpp-seq-omics3_2.4.1-3_i386.deb'. +dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in '../libbpp-seq-omics3-dbgsym_2.4.1-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbpp-seq-omics_2.4.1-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/12446/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12446/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/24965 and its subdirectories -I: Current time: Fri Apr 3 23:29:25 -12 2020 -I: pbuilder-time-stamp: 1585999765 +I: removing directory /srv/workspace/pbuilder/12446 and its subdirectories +I: Current time: Sat May 8 07:53:18 +14 2021 +I: pbuilder-time-stamp: 1620409998