Diff of the two buildlogs: -- --- b1/build.log 2020-04-04 06:59:39.254954660 +0000 +++ b2/build.log 2020-04-04 07:04:44.177009369 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 7 01:22:17 -12 2021 -I: pbuilder-time-stamp: 1620393737 +I: Current time: Sat Apr 4 20:59:41 +14 2020 +I: pbuilder-time-stamp: 1585983581 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Fri Nov 30 18:09:28 2018 -12 +gpgv: Signature made Sat Dec 1 20:09:28 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,6 +32,18 @@ dpkg-source: info: applying glibc2.27.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/12589/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12589/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -110,7 +122,7 @@ Get: 37 http://deb.debian.org/debian buster/main i386 qt5-qmake-bin i386 5.11.3+dfsg1-1+deb10u2 [1089 kB] Get: 38 http://deb.debian.org/debian buster/main i386 qtchooser i386 66-2 [27.8 kB] Get: 39 http://deb.debian.org/debian buster/main i386 qt5-qmake i386 5.11.3+dfsg1-1+deb10u2 [213 kB] -Fetched 22.7 MB in 0s (87.7 MB/s) +Fetched 22.7 MB in 9s (2411 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -289,7 +301,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/clonalframe-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/clonalframe-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package clonalframe dpkg-buildpackage: info: source version 1.2-9 dpkg-buildpackage: info: source distribution unstable @@ -315,7 +327,7 @@ Info: creating stash file /build/clonalframe-1.2/.qmake.stash make[1]: Leaving directory '/build/clonalframe-1.2' dh_auto_build - make -j18 + make -j10 make[1]: Entering directory '/build/clonalframe-1.2' g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_xmfa.o src/alignment_xmfa.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_structure.o src/alignment_structure.cpp @@ -327,21 +339,10 @@ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/hashcell.o src/hashcell.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_ages.o src/move_ages.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_delta.o src/move_delta.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_gap.o src/move_gap.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden.o src/move_hidden.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp -src/genes.cpp: In constructor 'wb::Genes::Genes(wb::Alignment*, char*, char*)': -src/genes.cpp:34:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(mapf,"%d",&buf); - ~~~~~~^~~~~~~~~~~~~~~~ -src/genes.cpp:53:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(genes,"%d %d",&f1,&f2); - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +src/alignment_structure.cpp: In constructor 'wb::Alignment_structure::Alignment_structure(char*, int)': +src/alignment_structure.cpp:45:19: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] + if (ch>='0' & ch<='9') + ~~^~~~~ src/alignment.cpp: In member function 'void wb::Alignment::writeToFile(char*)': src/alignment.cpp:236:21: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char * lets="ATCG"; @@ -358,11 +359,13 @@ src/alignment.cpp:246:37: warning: embedded '\0' in format [-Wformat-contains-nul] sprintf(buf+end-beg,"\0"); ^~~~ -src/alignment_structure.cpp: In constructor 'wb::Alignment_structure::Alignment_structure(char*, int)': -src/alignment_structure.cpp:45:19: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] - if (ch>='0' & ch<='9') - ~~^~~~~ -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp +src/genes.cpp: In constructor 'wb::Genes::Genes(wb::Alignment*, char*, char*)': +src/genes.cpp:34:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(mapf,"%d",&buf); + ~~~~~~^~~~~~~~~~~~~~~~ +src/genes.cpp:53:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(genes,"%d %d",&f1,&f2); + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/alignment_xmfa.cpp: In constructor 'wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)': src/alignment_xmfa.cpp:129:31: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for (j=0;j=t->recMap->size) break; ~^~~~~~~~~~~~~~~~~ +src/move_ages.cpp: In member function 'virtual void wb::Move_ages::move(wb::Param*)': +src/move_ages.cpp:60:21: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] + } else ;//printf("Age change rejected because out of range\n"); + ^ +src/move_delta.cpp: In constructor 'wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)': +src/move_delta.cpp:24:50: warning: unused parameter 'p' [-Wunused-parameter] + Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { + ~~~~~~~~^ +src/burst.cpp: In member function 'void wb::Burst::burst(wb::Param*)': +src/burst.cpp:188:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + for (k=1;ksize();k++) + ~^~~~~~~~~~~~ +src/burst.cpp:190:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + if (k>=rid->size()) continue; + ~^~~~~~~~~~~~~ +src/burst.cpp: In member function 'void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)': +src/burst.cpp:259:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ +src/burst.cpp:252:89: warning: unused parameter 'f' [-Wunused-parameter] + void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { + ~~~~^ +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp +src/consensus.cpp: In member function 'char* wb::Consensus::retConsensus(double)': +src/consensus.cpp:148:14: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] + bool all[n]; + ^~~ +src/consensus.cpp:148:14: note: in a call to built-in allocation function 'void* __builtin_alloca_with_align(unsigned int, unsigned int)' +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp src/move_gap.cpp: In constructor 'wb::Move_gap::Move_gap(gsl_rng*, wb::Param*)': src/move_gap.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter] Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {} ~~~~~~~~^ -src/move_mu.cpp: In constructor 'wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)': -src/move_mu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter] - Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} - ~~~~~~~~^ -src/move_nu.cpp: In constructor 'wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)': -src/move_nu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter] - Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} - ~~~~~~~~^ -src/move_nu.cpp: In member function 'virtual void wb::Move_nu::move(wb::Param*)': -src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] - if (gsl_vector_char_get(t->recMap,j)==1) - ^ -src/move_rho.cpp: In constructor 'wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)': -src/move_rho.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter] - Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) - ~~~~~~~~^ src/move_hidden.cpp: In constructor 'wb::Move_hidden::Move_hidden(gsl_rng*, wb::Param*)': src/move_hidden.cpp:25:52: warning: unused parameter 'p' [-Wunused-parameter] Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng) @@ -431,39 +448,34 @@ src/move_hidden.cpp:203:17: warning: unused variable 'd' [-Wunused-variable] int d=gsl_vector_int_get(p->a->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1); ^ -src/move_delta.cpp: In constructor 'wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)': -src/move_delta.cpp:24:50: warning: unused parameter 'p' [-Wunused-parameter] - Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { - ~~~~~~~~^ -src/burst.cpp: In member function 'void wb::Burst::burst(wb::Param*)': -src/burst.cpp:188:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - for (k=1;ksize();k++) - ~^~~~~~~~~~~~ -src/burst.cpp:190:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - if (k>=rid->size()) continue; - ~^~~~~~~~~~~~~ -src/burst.cpp: In member function 'void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)': -src/burst.cpp:259:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ -src/burst.cpp:252:89: warning: unused parameter 'f' [-Wunused-parameter] - void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { - ~~~~^ +src/move_rho.cpp: In constructor 'wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)': +src/move_rho.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter] + Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) + ~~~~~~~~^ +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/recorder.o src/recorder.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_coal.o src/tree_coal.cpp +src/move_nu.cpp: In constructor 'wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)': +src/move_nu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter] + Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} + ~~~~~~~~^ +src/move_nu.cpp: In member function 'virtual void wb::Move_nu::move(wb::Param*)': +src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] + if (gsl_vector_char_get(t->recMap,j)==1) + ^ +src/move_mu.cpp: In constructor 'wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)': +src/move_mu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter] + Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} + ~~~~~~~~^ +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp +g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp src/move_wb.cpp: In member function 'virtual void wb::Move_wb::move(wb::Param*)': src/move_wb.cpp:127:17: warning: unused variable 'sizeys2' [-Wunused-variable] int sizeys2=propLocs(ys,probys,x,p); ^~~~~~~ -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp -g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree.o src/tree.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/build/clonalframe-1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/ClonalFrame.o src/ClonalFrame.cpp -src/consensus.cpp: In member function 'char* wb::Consensus::retConsensus(double)': -src/consensus.cpp:148:14: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] - bool all[n]; - ^~~ -src/consensus.cpp:148:14: note: in a call to built-in allocation function 'void* __builtin_alloca_with_align(unsigned int, unsigned int)' src/util.cpp: In static member function 'static void wb::Util::normalize(double*, int)': src/util.cpp:83:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i=0;irec++;} + ~~~^~~~~~~~~ +src/tree.cpp:223:29: warning: 'vals[5]' may be used uninitialized in this function [-Wmaybe-uninitialized] + {ret+=vals[5];p->rec++;} + ~~~^~~~~~~~~ src/ClonalFrame.cpp: In function 'gsl_rng* makerng()': src/ClonalFrame.cpp:83:14: warning: variable 'rng_seed' set but not used [-Wunused-but-set-variable] long int rng_seed; @@ -486,13 +505,6 @@ src/ClonalFrame.cpp:341:12: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Time spent in MH in seconds:%d\n",t2-t); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ -src/tree.cpp: In member function 'double wb::Tree::llhoodb(wb::Param*)': -src/tree.cpp:229:87: warning: 'vals[9]' may be used uninitialized in this function [-Wmaybe-uninitialized] - } else if (gsl_vector_char_get(recMap,i)==0) {ret+=vals[8];} else {ret+=vals[9];p->rec++;} - ~~~^~~~~~~~~ -src/tree.cpp:223:29: warning: 'vals[5]' may be used uninitialized in this function [-Wmaybe-uninitialized] - {ret+=vals[5];p->rec++;} - ~~~^~~~~~~~~ src/ClonalFrame.cpp: In function 'gsl_rng* makerng()': src/ClonalFrame.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(seed),1,devrandom); @@ -524,20 +536,22 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-9_i386.deb'. dpkg-deb: building package 'clonalframe-dbgsym' in '../clonalframe-dbgsym_1.2-9_i386.deb'. +dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-9_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../clonalframe_1.2-9_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/12589/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12589/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22166 and its subdirectories -I: Current time: Fri May 7 01:22:37 -12 2021 -I: pbuilder-time-stamp: 1620393757 +I: removing directory /srv/workspace/pbuilder/12589 and its subdirectories +I: Current time: Sat Apr 4 21:04:43 +14 2020 +I: pbuilder-time-stamp: 1585983883