Diff of the two buildlogs: -- --- b1/build.log 2020-05-08 01:29:37.137711982 +0000 +++ b2/build.log 2020-05-08 01:30:18.780882638 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 7 13:22:39 -12 2020 -I: pbuilder-time-stamp: 1588900959 +I: Current time: Thu Jul 14 04:15:38 +14 2022 +I: pbuilder-time-stamp: 1657721738 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Aug 23 00:38:10 2018 -12 +gpgv: Signature made Fri Aug 24 02:38:10 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -28,6 +28,18 @@ dpkg-source: info: unpacking bppsuite_2.4.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/55171/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/55171/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -145,7 +157,7 @@ Get: 72 http://deb.debian.org/debian buster/main i386 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libxml-libxml-perl i386 2.0134+dfsg-1 [362 kB] Get: 74 http://deb.debian.org/debian buster/main i386 texinfo i386 6.5.0.dfsg.1-4+b1 [1425 kB] -Fetched 39.6 MB in 17s (2381 kB/s) +Fetched 39.6 MB in 0s (87.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -475,7 +487,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable @@ -530,7 +542,7 @@ -- Build files have been written to: /build/bppsuite-2.4.1/obj-i686-linux-gnu make[1]: Leaving directory '/build/bppsuite-2.4.1' dh_auto_build - cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-i686-linux-gnu/CMakeFiles /build/bppsuite-2.4.1/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -542,214 +554,214 @@ make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= -Scanning dependencies of target bppreroot -Scanning dependencies of target bppdist -Scanning dependencies of target bppseqman -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -Scanning dependencies of target bppconsense -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -Scanning dependencies of target bppancestor -make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -Scanning dependencies of target bpppars +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/man /build/bppsuite-2.4.1/obj-i686-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= +Scanning dependencies of target bppreroot +Scanning dependencies of target bppconsense make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +Scanning dependencies of target bpppopstats +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make 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'/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build +Scanning dependencies of target bppdist make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' Scanning dependencies of target bppml -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -Scanning dependencies of target bpppopstats +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +Scanning dependencies of target bpppars +Scanning dependencies of target bppancestor make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 2%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build -[ 5%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o 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+Scanning dependencies of target bpptreedraw +Scanning dependencies of target bppmixedlikelihoods +Scanning dependencies of target bppalnscore make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppDist.cpp -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPars.cpp -[ 21%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -cd 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-Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp +[ 52%] Compressing manpage bpppars.1 +[ 55%] Compressing manpage bpppopstats.1 cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppars.1 > /build/bppsuite-2.4.1/obj-i686-linux-gnu/man/bpppars.1.gz -[ 68%] Compressing manpage bppreroot.1 -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppreroot.1 > /build/bppsuite-2.4.1/obj-i686-linux-gnu/man/bppreroot.1.gz -[ 71%] Compressing manpage bpppopstats.1 +[ 57%] Compressing manpage bppreroot.1 cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppopstats.1 > /build/bppsuite-2.4.1/obj-i686-linux-gnu/man/bpppopstats.1.gz -[ 73%] Compressing manpage bppseqman.1 -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/man && /bin/gzip -c -n -9 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Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 78%] Built target man -[ 81%] Compressing info page +[ 65%] Built target man +[ 68%] Compressing info page cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc/bppsuite.info > /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc/bppsuite.info.gz make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 81%] Built target info -[ 84%] Linking CXX executable bppdist -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +[ 68%] Built target info +[ 71%] Linking CXX executable bppalnscore +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 84%] Built target bppdist -[ 86%] Linking CXX executable bppseqgen -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 -[ 89%] Linking CXX executable bppancestor -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 +[ 71%] Built target bppalnscore +[ 73%] Linking CXX executable bppseqman +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +[ 76%] Linking CXX executable bppconsense +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 78%] Linking CXX executable bpptreedraw +[ 78%] Built target bppseqman +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 78%] Built target bppconsense +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 78%] Built target bpptreedraw +[ 81%] Linking CXX executable bppreroot +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 81%] Built target bppreroot +[ 84%] Linking CXX executable bpppars +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 84%] Built target bpppars +[ 86%] Linking CXX executable bppancestor +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 -[ 89%] Built target bppseqgen -[ 92%] Linking CXX executable bppalnscore -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 -[ 92%] Built target bppancestor +[ 86%] Built target bppancestor +[ 89%] Linking CXX executable bppmixedlikelihoods +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 92%] Built target bppalnscore -[ 94%] Linking CXX executable bpppopstats -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +[ 89%] Built target bppmixedlikelihoods +[ 92%] Linking CXX executable bppdist +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 92%] Built target bppdist +[ 94%] Linking CXX executable bppseqgen +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 [ 97%] Linking CXX executable bppml cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 97%] Built target bpppopstats +[ 97%] Built target bppseqgen make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' [ 97%] Built target bppml -[100%] Linking CXX executable bppmixedlikelihoods -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 -/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 +[100%] Linking CXX executable bpppopstats +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 +/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[100%] Built target bppmixedlikelihoods +[100%] Built target bpppopstats make[2]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' @@ -760,7 +772,7 @@ dh_testroot dh_prep dh_auto_install - cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-i686-linux-gnu/CMakeFiles /build/bppsuite-2.4.1/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -775,15 +787,19 @@ make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= +make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend +make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' @@ -791,107 +807,103 @@ make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/man /build/bppsuite-2.4.1/obj-i686-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppdist.dir/build'. +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build -make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppreroot.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppopstats.dir/build'. +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppml.dir/build'. +make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqgen.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build +make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build -[ 5%] Built target bppdist -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend +make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqman.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppancestor.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppml.dir/build'. +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppconsense.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 10%] Built target bpppopstats -make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpptreedraw.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppreroot.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppars.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppopstats.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppancestor.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppdist.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 15%] Built target bppml -[ 21%] Built target bppreroot -make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend -[ 26%] Built target bppseqgen -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite /build/bppsuite-2.4.1/obj-i686-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc /build/bppsuite-2.4.1/obj-i686-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -cd /build/bppsuite-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/man /build/bppsuite-2.4.1/obj-i686-linux-gnu /build/bppsuite-2.4.1/obj-i686-linux-gnu/man /build/bppsuite-2.4.1/obj-i686-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake --color= -[ 34%] Built target bppseqman -[ 36%] Built target bpptreedraw -[ 47%] Built target bppancestor -[ 47%] Built target bppconsense -[ 52%] Built target bpppars +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpppars.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build'. -make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'doc/CMakeFiles/info.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bpptreedraw.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqman.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build -make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppalnscore.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppseqgen.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'doc/CMakeFiles/info.dir/build'. +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' make[3]: Nothing to be done for 'man/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' -[ 57%] Built target bppmixedlikelihoods -[ 63%] Built target info -[ 81%] Built target bppalnscore +make[3]: Entering directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'bppSuite/CMakeFiles/bppalnscore.dir/build'. +make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' +[ 5%] Built target bppconsense +[ 10%] Built target info +[ 15%] Built target bppseqgen +[ 21%] Built target bppmixedlikelihoods +[ 26%] Built target bppancestor +[ 31%] Built target bppml +[ 39%] Built target bppreroot +[ 42%] Built target bpppopstats +[ 47%] Built target bppdist +[ 52%] Built target bpppars +[ 57%] Built target bppalnscore +[ 89%] Built target bpptreedraw [100%] Built target man +[100%] Built target bppseqman make[2]: Leaving directory '/build/bppsuite-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -950,20 +962,22 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-1_i386.deb'. -dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-1_all.deb'. dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-1_i386.deb'. +dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bppsuite_2.4.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/55171/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/55171/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/16565 and its subdirectories -I: Current time: Thu May 7 13:29:36 -12 2020 -I: pbuilder-time-stamp: 1588901376 +I: removing directory /srv/workspace/pbuilder/55171 and its subdirectories +I: Current time: Thu Jul 14 04:16:18 +14 2022 +I: pbuilder-time-stamp: 1657721778