Diff of the two buildlogs: -- --- b1/build.log 2019-07-06 11:27:59.660056544 +0000 +++ b2/build.log 2019-07-06 11:28:26.866780453 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jul 5 23:11:37 -12 2019 -I: pbuilder-time-stamp: 1562411497 +I: Current time: Sat Aug 8 07:51:00 +14 2020 +I: pbuilder-time-stamp: 1596822660 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Feb 19 03:29:05 2019 -12 +gpgv: Signature made Wed Feb 20 05:29:05 2019 +14 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key @@ -28,6 +28,18 @@ dpkg-source: info: unpacking biomaj3-core_3.0.15-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/14070/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14070/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -144,7 +156,7 @@ Get: 63 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-mock all 2.0.0-4 [60.3 kB] Get: 64 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-nose all 1.3.7-4 [132 kB] Get: 65 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-requests all 2.21.0-1 [66.9 kB] -Fetched 28.7 MB in 41s (709 kB/s) +Fetched 28.7 MB in 1s (22.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -437,9 +449,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (659 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23243 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/biomaj3-core-3.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/biomaj3-core-3.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package biomaj3-core dpkg-buildpackage: info: source version 3.0.15-1 dpkg-buildpackage: info: source distribution unstable @@ -468,10 +512,10 @@ running build running build_py creating /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core -copying biomaj_core/config.py -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core +copying biomaj_core/utils.py -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core copying biomaj_core/bmajindex.py -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core +copying biomaj_core/config.py -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core copying biomaj_core/__init__.py -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core -copying biomaj_core/utils.py -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core running egg_info creating biomaj_core.egg-info writing biomaj_core.egg-info/PKG-INFO @@ -485,30 +529,30 @@ copying biomaj_core/mimes-bio.txt -> /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build; python3.7 -m nose -v tests -Check .name, .exe and .args are well check during bank configuration ... 2019-07-05 23:27:49,939 ERROR [root][MainThread] Process job not defined -2019-07-05 23:27:49,953 ERROR [root][MainThread] Process exe for job not defined -2019-07-05 23:27:49,971 ERROR [root][MainThread] Process args for job not defined -2019-07-05 23:27:49,984 ERROR [root][MainThread] Process prejob not defined -2019-07-05 23:27:50,002 ERROR [root][MainThread] Process exe for prejob not defined -2019-07-05 23:27:50,017 ERROR [root][MainThread] Process args for prejob not defined -2019-07-05 23:27:50,032 ERROR [root][MainThread] Process rmjob not defined -2019-07-05 23:27:50,048 ERROR [root][MainThread] Process exe for rmjob not defined -2019-07-05 23:27:50,064 ERROR [root][MainThread] Process args for rmjob not defined +Check .name, .exe and .args are well check during bank configuration ... 2020-08-08 07:51:24,001 ERROR [root][MainThread] Process job not defined +2020-08-08 07:51:24,004 ERROR [root][MainThread] Process exe for job not defined +2020-08-08 07:51:24,006 ERROR [root][MainThread] Process args for job not defined +2020-08-08 07:51:24,008 ERROR [root][MainThread] Process prejob not defined +2020-08-08 07:51:24,010 ERROR [root][MainThread] Process exe for prejob not defined +2020-08-08 07:51:24,013 ERROR [root][MainThread] Process args for prejob not defined +2020-08-08 07:51:24,015 ERROR [root][MainThread] Process rmjob not defined +2020-08-08 07:51:24,017 ERROR [root][MainThread] Process exe for rmjob not defined +2020-08-08 07:51:24,019 ERROR [root][MainThread] Process args for rmjob not defined ok -test_copy (biomaj_tests.TestBiomajUtils) ... 2019-07-05 23:27:50,168 DEBUG [biomaj][MainThread] 1/1 copy file biomaj_tests.py +test_copy (biomaj_tests.TestBiomajUtils) ... 2020-08-08 07:51:24,023 DEBUG [biomaj][MainThread] 1/1 copy file biomaj_tests.py ok test_copy_with_regexp (biomaj_tests.TestBiomajUtils) ... ok test_mimes (biomaj_tests.TestBiomajUtils) ... ok test_properties_override (biomaj_tests.TestBiomajUtils) ... ok test_service_config_override (biomaj_tests.TestBiomajUtils) ... ok -test_uncompress (biomaj_tests.TestBiomajUtils) ... 2019-07-05 23:27:50,939 DEBUG [biomaj][MainThread] 1/1 copy file bank/test.fasta.gz -2019-07-05 23:27:50,954 DEBUG [biomaj][MainThread] Uncompress:uncompress:/tmp/tmp5grzqgp3biomaj/data/bank/test.fasta.gz +test_uncompress (biomaj_tests.TestBiomajUtils) ... 2020-08-08 07:51:24,041 DEBUG [biomaj][MainThread] 1/1 copy file bank/test.fasta.gz +2020-08-08 07:51:24,045 DEBUG [biomaj][MainThread] Uncompress:uncompress:/tmp/tmpva2eom8fbiomaj/data/bank/test.fasta.gz ok test_index (biomaj_tests.TestElastic) ... SKIP: Skipping indexing tests due to elasticsearch not available test_remove_all (biomaj_tests.TestElastic) ... SKIP: Skipping indexing tests due to elasticsearch not available ---------------------------------------------------------------------- -Ran 9 tests in 1.606s +Ran 9 tests in 0.110s OK (SKIP=2) create-stamp debian/debhelper-build-stamp @@ -535,20 +579,20 @@ creating /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7 creating /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages creating /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core -copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/config.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/mimes-bio.txt -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core -copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/bmajindex.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core -copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__init__.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/utils.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core creating /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__pycache__ -copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__pycache__/bmajindex.cpython-37.pyc -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__pycache__ copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__pycache__/__init__.cpython-37.pyc -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__pycache__ +copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__pycache__/bmajindex.cpython-37.pyc -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__pycache__ copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__pycache__/config.cpython-37.pyc -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__pycache__ copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__pycache__/utils.cpython-37.pyc -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__pycache__ -byte-compiling /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/config.py to config.cpython-37.pyc +copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/bmajindex.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core +copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/config.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core +copying /build/biomaj3-core-3.0.15/.pybuild/cpython3_3.7_biomaj-core/build/biomaj_core/__init__.py -> /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core +byte-compiling /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/utils.py to utils.cpython-37.pyc byte-compiling /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/bmajindex.py to bmajindex.cpython-37.pyc +byte-compiling /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/config.py to config.cpython-37.pyc byte-compiling /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/__init__.py to __init__.cpython-37.pyc -byte-compiling /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core/utils.py to utils.cpython-37.pyc running install_egg_info Copying biomaj_core.egg-info to /build/biomaj3-core-3.0.15/debian/python3-biomaj3-core/usr/lib/python3.7/dist-packages/biomaj_core-3.0.15.egg-info Skipping SOURCES.txt @@ -576,12 +620,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/14070/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14070/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/14872 and its subdirectories -I: Current time: Fri Jul 5 23:27:59 -12 2019 -I: pbuilder-time-stamp: 1562412479 +I: removing directory /srv/workspace/pbuilder/14070 and its subdirectories +I: Current time: Sat Aug 8 07:51:26 +14 2020 +I: pbuilder-time-stamp: 1596822686