Diff of the two buildlogs: -- --- b1/build.log 2019-06-24 13:02:00.135476334 +0000 +++ b2/build.log 2019-06-24 13:06:04.216011176 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 24 00:22:03 -12 2019 -I: pbuilder-time-stamp: 1561378923 +I: Current time: Mon Jul 27 09:25:03 +14 2020 +I: pbuilder-time-stamp: 1595791503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jul 17 21:03:04 2018 -12 +gpgv: Signature made Wed Jul 18 23:03:04 2018 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./avogadro_1.2.0-4.dsc @@ -35,6 +35,18 @@ dpkg-source: info: applying libsymspg.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/2794/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2794/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -355,7 +367,7 @@ Get: 249 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-sip-dev i386 4.19.14+dfsg-2 [116 kB] Get: 250 http://cdn-fastly.deb.debian.org/debian buster/main i386 qt4-dev-tools i386 4:4.8.7+dfsg-18 [4192 kB] Get: 251 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] -Fetched 203 MB in 2min 46s (1227 kB/s) +Fetched 203 MB in 37s (5463 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -1392,9 +1404,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (82.0 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48163 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable @@ -1580,7 +1624,7 @@ -- Build files have been written to: /build/avogadro-1.2.0/obj-i686-linux-gnu make[1]: Leaving directory '/build/avogadro-1.2.0' dh_auto_build - cd obj-i686-linux-gnu && make -j10 + cd obj-i686-linux-gnu && make -j18 make[1]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-i686-linux-gnu/CMakeFiles /build/avogadro-1.2.0/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -1591,56 +1635,65 @@ make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend +make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= [ 0%] Generating ui_bsdysettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui -[ 0%] Generating moc_navigatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters -[ 0%] Generating moc_slaterset.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters +[ 0%] Generating moc_elementcolor.cxx [ 1%] Generating moc_bsdyengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters [ 2%] Generating qrc_navigatetool.cxx -[ 2%] Generating moc_elementcolor.cxx -[ 2%] Generating ui_navigatesettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name navigatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui +[ 2%] Generating moc_navigatetool.cxx +[ 2%] Generating moc_slaterset.cxx [ 2%] Generating moc_basisset.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters [ 2%] Generating moc_gaussianset.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +[ 2%] Generating ui_navigatesettingswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name navigatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui Scanning dependencies of target tubegen +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +Scanning dependencies of target msym +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o [ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o [ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o -[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o +[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd 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/usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp -[ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c -[ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY 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/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp -Scanning dependencies of target msym -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && 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-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors 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-D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, @@ -1648,12 +1701,31 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c Scanning dependencies of target elementcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdlib.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/string.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 2%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +[ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1670,24 +1742,10 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target bsdyengine -Scanning dependencies of target navigatetool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp -[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c +[ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1699,11 +1757,45 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdlib.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c +Scanning dependencies of target navigatetool +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdio.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build +Scanning dependencies of target bsdyengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o +[ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1721,69 +1813,30 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/string.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c -[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target OpenQube make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdio.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp +[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, @@ -1794,8 +1847,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: @@ -1818,19 +1869,50 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: + from /usr/include/stdlib.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: + from /usr/include/math.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -1852,24 +1934,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -1878,34 +1942,28 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp +[ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -1928,31 +1986,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Linking CXX static library elementcolor.a -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 -/usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -/usr/bin/ranlib elementcolor.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 4%] Linking C static library libmsym.a -[ 4%] Built target elementcolor -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -1963,10 +1997,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o -/usr/bin/ranlib libmsym.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 4%] Built target msym [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -1980,6 +2010,8 @@ ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, @@ -1993,12 +2025,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 4%] Linking CXX static library libtubegen.a -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 -/usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp +[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2014,11 +2042,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/ranlib libtubegen.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 4%] Built target tubegen -[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2074,10 +2097,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 5%] Linking CXX static library bsdyengine.a -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 -/usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -2090,9 +2109,13 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/ranlib bsdyengine.a +[ 5%] Linking C static library libmsym.a +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 +/usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o +/usr/bin/ranlib libmsym.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 5%] Built target bsdyengine +[ 5%] Built target msym [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -2125,6 +2148,13 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 5%] Linking CXX static library elementcolor.a +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 +/usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o +/usr/bin/ranlib elementcolor.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 5%] Built target elementcolor [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -2152,6 +2182,13 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 5%] Linking CXX static library libtubegen.a +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 +/usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o +/usr/bin/ranlib libtubegen.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 5%] Built target tubegen [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -2166,6 +2203,13 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 6%] Linking CXX static library bsdyengine.a +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 +/usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o +/usr/bin/ranlib bsdyengine.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 6%] Built target bsdyengine [ 6%] Linking CXX static library navigatetool.a cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 @@ -2175,339 +2219,339 @@ [ 6%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 6%] Generating moc_colorbutton.cxx +[ 6%] Generating moc_cube.cxx +[ 6%] Generating moc_animation.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters [ 7%] Generating moc_bond.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_cube.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx_parameters [ 7%] Generating qrc_pythontool.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_bond.cxx_parameters [ 7%] Generating moc_atom.cxx -[ 7%] Generating moc_animation.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_atom.cxx_parameters +[ 7%] Generating moc_elementdetail_p.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name pythontool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/qrc_pythontool.cxx /build/avogadro-1.2.0/libavogadro/src/pythontool.qrc +[ 7%] Generating moc_dockextension.cxx [ 7%] Generating moc_color.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_atom.cxx_parameters [ 7%] Generating moc_dockwidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx_parameters -[ 7%] Generating moc_colorbutton.cxx -[ 7%] Generating moc_dockextension.cxx +[ 7%] Generating moc_elementtranslator.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_color.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters -[ 7%] Generating moc_cube.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_cube.cxx_parameters -[ 7%] Generating moc_elementdetail_p.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx_parameters -[ 7%] Generating moc_elementtranslator.cxx [ 7%] Generating moc_engine.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_engine.cxx_parameters -[ 7%] Generating moc_fragment.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters -[ 7%] Generating moc_glwidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters [ 8%] Generating moc_extension.cxx -[ 8%] Generating moc_meshgenerator.cxx +[ 8%] Generating moc_fragment.cxx +[ 8%] Generating moc_glwidget.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_extension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters -[ 8%] Generating moc_molecule.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters [ 8%] Generating moc_mesh.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_mesh.cxx_parameters +[ 8%] Generating moc_meshgenerator.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 8%] Generating moc_moleculefile.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters [ 8%] Generating moc_periodictablescene_p.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 8%] Generating moc_periodictableview.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters [ 9%] Generating moc_plotwidget.cxx [ 9%] Generating moc_plugin.cxx +[ 9%] Generating moc_pluginmanager.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_plotwidget.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_plugin.cxx_parameters -[ 9%] Generating moc_pluginmanager.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pluginmanager.cxx_parameters +[ 9%] Generating moc_molecule.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters [ 9%] Generating moc_primitive.cxx -[ 9%] Generating moc_protein.cxx -[ 9%] Generating moc_readfilethread_p.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_primitive.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_protein.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 9%] Generating moc_residue.cxx +[ 9%] Generating moc_readfilethread_p.cxx +[ 9%] Generating moc_protein.cxx [ 9%] Generating moc_textmatrixeditor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_protein.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_residue.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters -[ 9%] Generating moc_toolgroup.cxx +[ 9%] Generating moc_pythonerror.cxx [ 9%] Generating moc_tool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx_parameters +[ 9%] Generating moc_toolgroup.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters [ 10%] Generating moc_zmatrix.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters [ 10%] Generating moc_pythonengine_p.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters -[ 10%] Generating moc_pythonerror.cxx [ 10%] Generating moc_pythonextension_p.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 10%] Generating moc_pythontool_p.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters +[ 10%] Generating libavogadro_ar.qm [ 10%] Generating libavogadro_bg.qm [ 10%] Generating libavogadro_bs.qm -[ 10%] Generating libavogadro_ar.qm +[ 11%] Generating libavogadro_ca@valencia.qm +[ 11%] Generating libavogadro_ca.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ar.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bg.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bs.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ar.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts -[ 10%] Generating libavogadro_ca.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts -[ 11%] Generating libavogadro_ca@valencia.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts [ 11%] Generating libavogadro_cs.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/cs.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts [ 11%] Generating libavogadro_da.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/cs.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/da.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts [ 11%] Generating libavogadro_de.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/de.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts [ 11%] Generating libavogadro_el.qm +[ 11%] Generating libavogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/el.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts +[ 11%] Generating libavogadro_en_CA.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts +[ 11%] Generating libavogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts +[ 11%] Generating libavogadro_es.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts +[ 11%] Generating libavogadro_et.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/et.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.qm -[ 11%] Generating libavogadro_en_AU.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.qm -[ 11%] Generating libavogadro_en_CA.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.qm -[ 11%] Generating libavogadro_en_GB.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -[ 11%] Generating libavogadro_et.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/et.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts -[ 11%] Generating libavogadro_es.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts [ 12%] Generating libavogadro_eu.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/eu.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts [ 12%] Generating libavogadro_fi.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts [ 12%] Generating libavogadro_fr.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts -[ 12%] Generating libavogadro_gl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/gl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.qm +[ 12%] Generating libavogadro_gl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/gl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.qm [ 12%] Generating libavogadro_he.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/he.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.qm [ 12%] Generating libavogadro_hi.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.qm -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.qm [ 12%] Generating libavogadro_hu.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hu.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts [ 12%] Generating libavogadro_id.qm -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/id.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.qm [ 12%] Generating libavogadro_it.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/it.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts [ 13%] Generating libavogadro_ja.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ja.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts -[ 13%] Generating libavogadro_kn.qm [ 13%] Generating libavogadro_ko.qm +[ 13%] Generating libavogadro_kn.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/kn.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ko.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 13%] Generating libavogadro_ms.qm +[ 13%] Generating libavogadro_nb.qm +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ms.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nb.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.qm +[ 13%] Generating libavogadro_nl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts +[ 13%] Generating libavogadro_oc.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 13%] Generating libavogadro_pl.qm +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts +[ 13%] Generating libavogadro_pt.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 14%] Generating libavogadro_pt_BR.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.qm -[ 13%] Generating libavogadro_nb.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nb.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts -[ 13%] Generating libavogadro_nl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.qm -[ 13%] Generating libavogadro_oc.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts -[ 13%] Generating libavogadro_pl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.qm -[ 13%] Generating libavogadro_pt.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts -[ 14%] Generating libavogadro_pt_BR.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.qm [ 14%] Generating libavogadro_ru.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ru.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts -[ 14%] Generating libavogadro_sk.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 14%] Generating libavogadro_sl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.qm +[ 14%] Generating libavogadro_sk.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.qm +[ 14%] Generating libavogadro_sl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.qm [ 14%] Generating libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sq.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.qm [ 14%] Generating libavogadro_sr.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts +[ 14%] Generating libavogadro_sv.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sv.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.qm -[ 14%] Generating libavogadro_sv.qm [ 14%] Generating libavogadro_th.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sv.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/th.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts [ 14%] Generating libavogadro_tr.qm -[ 14%] Generating libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/tr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 14%] Generating libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ug.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.qm [ 15%] Generating libavogadro_uk.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/uk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm [ 15%] Generating libavogadro_vi.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/vi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 15%] Generating libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts +[ 15%] Generating libavogadro_zh_TW.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.qm -[ 15%] Generating libavogadro_zh_TW.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= -[ 15%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 15%] Built target OpenQube -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= -Scanning dependencies of target qube -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/iostream:38, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ Scanning dependencies of target avogadro make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/animation.cpp +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/atom.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/bond.cpp [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/color.cpp +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cube.cpp +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp +[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2518,19 +2562,18 @@ from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, - from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/animation.h:29, + from /build/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/bond.cpp -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/animation.cpp -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/color.cpp +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engine.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extension.cpp +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2542,16 +2585,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/camera.h:35, - from /build/avogadro-1.2.0/libavogadro/src/camera.cpp:28: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, + from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2562,12 +2602,14 @@ from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/libavogadro/src/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/animation.h:29, - from /build/avogadro-1.2.0/libavogadro/src/animation.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, + from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glhit.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2579,15 +2621,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, - from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/camera.h:35, + from /build/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cube.cpp -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2615,8 +2653,9 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colorbutton.h:31, - from /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp:26: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/cube.h:29, + from /build/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2631,8 +2670,10 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, - from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2647,10 +2688,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, + from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2665,14 +2704,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/cube.h:29, - from /build/avogadro-1.2.0/libavogadro/src/cube.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/colorbutton.h:31, + from /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2680,34 +2716,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, + from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qgraphicsitem.h:45, - from /usr/include/qt4/QtGui/QGraphicsItem:1, - from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, - from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 16%] Linking CXX executable ../../../../../bin/qube -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 -/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2720,28 +2753,18 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, - from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: + from /usr/include/qt4/QtGui/qgraphicsitem.h:45, + from /usr/include/qt4/QtGui/QGraphicsItem:1, + from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, + from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 16%] Built target qube -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2758,8 +2781,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2771,14 +2792,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extension.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/fragment.h:28, + from /build/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2790,14 +2809,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/fragment.h:28, - from /build/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glhit.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2833,8 +2850,6 @@ ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2851,6 +2866,10 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glwidget.cpp +[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/idlist.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2867,8 +2886,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/idlist.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2979,6 +2996,8 @@ ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/neighborlist.cpp +[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/painter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2997,8 +3016,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/painter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3313,6 +3330,9 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 20%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/toolgroup.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3364,6 +3384,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 20%] Built target OpenQube +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= +Scanning dependencies of target qube +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 20%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/iostream:38, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3456,6 +3495,8 @@ ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp +[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3474,8 +3515,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3513,8 +3552,6 @@ ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_bond.cxx -[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_color.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3532,6 +3569,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_color.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3566,6 +3605,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 21%] Linking CXX executable ../../../../../bin/qube +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 +/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 21%] Built target qube [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_cube.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -3750,8 +3794,6 @@ ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_meshgenerator.cxx -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3768,6 +3810,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3856,10 +3900,6 @@ ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_plugin.cxx -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pluginmanager.cxx -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3876,6 +3916,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pluginmanager.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3892,6 +3934,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3910,8 +3954,6 @@ ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_protein.cxx -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3928,6 +3970,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3945,8 +3989,6 @@ ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_residue.cxx -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3965,6 +4007,10 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3981,10 +4027,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4001,6 +4043,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4033,8 +4077,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, @@ -4048,11 +4090,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4064,15 +4108,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx -[ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4091,8 +4133,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/qrc_pythontool.cxx +[ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4109,6 +4151,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4133,156 +4177,144 @@ make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 25%] Generating ui_hbondsettingswidget.h -[ 25%] Generating ui_axessettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui [ 25%] Generating ui_ringsettingswidget.h -[ 25%] Generating ui_labelsettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui -[ 25%] Generating moc_hbondengine.cxx -[ 25%] Generating ui_qtaimsettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters [ 25%] Generating ui_ribbonsettingswidget.h cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui +[ 25%] Generating ui_qtaimsettingswidget.h +[ 25%] Generating ui_hbondsettingswidget.h +[ 25%] Generating ui_axessettingswidget.h +[ 25%] Generating ui_labelsettingswidget.h cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui -[ 25%] Generating ui_wiresettingswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui [ 25%] Generating ui_sticksettingswidget.h +[ 25%] Generating moc_stickengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui +[ 25%] Generating ui_wiresettingswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui +[ 25%] Generating ui_dipolesettingswidget.h +[ 25%] Generating ui_cartoonsettingswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters [ 25%] Generating moc_forceengine.cxx +[ 25%] Generating ui_spheresettingswidget.h +[ 25%] Generating moc_polygonengine.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters -make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend -[ 25%] Generating moc_stickengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 25%] Generating moc_simplewireengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters [ 25%] Generating moc_labelengine.cxx -[ 25%] Generating moc_ringengine.cxx -[ 25%] Generating moc_axesengine.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters +[ 25%] Generating moc_hbondengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 25%] Generating moc_ribbonengine.cxx +[ 25%] Generating ui_surfacesettingswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui +[ 25%] Generating moc_sphereengine.cxx +[ 25%] Generating moc_ringengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters -[ 25%] Generating moc_wireengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters [ 25%] Generating moc_qtaimengine.cxx -[ 25%] Generating moc_ribbonengine.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters -[ 25%] Generating ui_cartoonsettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui [ 25%] Generating moc_cartoonengine.cxx +[ 25%] Generating moc_dipoleengine.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= +[ 25%] Generating moc_wireengine.cxx +[ 25%] Generating moc_surfaceengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters +[ 25%] Generating qrc_selectrotatetool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 25%] Generating moc_selectrotatetool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters +[ 25%] Generating moc_axesengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters +[ 25%] Generating qrc_manipulatetool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc +[ 25%] Generating qrc_bondcentrictool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name bondcentrictool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc +[ 25%] Generating moc_manipulatetool.cxx +[ 26%] Generating moc_bondcentrictool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= +Scanning dependencies of target simplewireengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' Scanning dependencies of target forceengine +Scanning dependencies of target polygonengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o +[ 26%] Generating ui_manipulatesettingswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui +[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -Scanning dependencies of target ribbonengine +[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp Scanning dependencies of target hbondengine -Scanning dependencies of target qtaimengine +[ 27%] Generating moc_skeletontree.cxx make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -Scanning dependencies of target ringengine +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build +Scanning dependencies of target surfaceengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -Scanning dependencies of target stickengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build -make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build -make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -Scanning dependencies of target wireengine -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build -[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o -[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp -[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp -[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -Scanning dependencies of target labelengine -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4294,11 +4326,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +Scanning dependencies of target dipoleengine In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4310,11 +4343,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4326,22 +4360,43 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build +Scanning dependencies of target sphereengine +Scanning dependencies of target stickengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp -Scanning dependencies of target cartoonengine +make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build +Scanning dependencies of target ribbonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build -Scanning dependencies of target axesengine +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build +Scanning dependencies of target labelengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build +Scanning dependencies of target ringengine +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +Scanning dependencies of target qtaimengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4353,13 +4408,21 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +Scanning dependencies of target wireengine +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build +Scanning dependencies of target cartoonengine In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4371,15 +4434,21 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, - from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, + from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp +Scanning dependencies of target axesengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o +Scanning dependencies of target selectrotatetool +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4391,8 +4460,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -4407,13 +4476,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: + from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4425,15 +4495,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4445,11 +4515,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, + from /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4461,13 +4534,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4479,13 +4550,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, + from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4497,13 +4566,20 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp +[ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp +[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4515,29 +4591,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Linking CXX shared module ../../../lib/forceengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 28%] Built target forceengine -make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 28%] Generating ui_spheresettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui -[ 28%] Generating moc_sphereengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= -Scanning dependencies of target sphereengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4549,13 +4607,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, - from /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4567,26 +4623,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Linking CXX shared module ../../../lib/ringengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 28%] Linking CXX shared module ../../../lib/stickengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 28%] Linking CXX shared module ../../../lib/ribbonengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 28%] Built target stickengine -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx -[ 29%] Linking CXX shared module ../../../lib/hbondengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4598,15 +4639,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, + from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx +Scanning dependencies of target manipulatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4618,28 +4662,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, + from /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Built target ribbonengine -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Generating ui_dipolesettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui -[ 29%] Generating moc_dipoleengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters +Scanning dependencies of target bondcentrictool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Built target ringengine -make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Generating moc_polygonengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx +[ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4648,27 +4682,15 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, + from /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target polygonengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build -Scanning dependencies of target dipoleengine -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4680,12 +4702,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4697,11 +4720,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4713,31 +4738,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Linking CXX shared module ../../../lib/axesengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 -[ 29%] Built target hbondengine -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Generating ui_surfacesettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 29%] Generating moc_surfaceengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= -Scanning dependencies of target surfaceengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp -[ 29%] Built target axesengine +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4749,13 +4756,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, - from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4767,15 +4774,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx -[ 30%] Linking CXX shared module ../../../lib/qtaimengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 +[ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4787,32 +4792,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 30%] Linking CXX shared module ../../../lib/sphereengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 30%] Built target sphereengine -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 30%] Built target qtaimengine -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 30%] Generating moc_simplewireengine.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters -[ 30%] Generating qrc_selectrotatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc -[ 30%] Generating moc_selectrotatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= -[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4824,24 +4810,23 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= -[ 30%] Linking CXX shared module ../../../lib/polygonengine.so +[ 33%] Linking CXX shared module ../../../lib/simplewireengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Linking CXX shared module ../../../lib/polygonengine.so cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 -[ 31%] Linking CXX shared module ../../../lib/wireengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -Scanning dependencies of target simplewireengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx +[ 33%] Built target simplewireengine +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4853,28 +4838,33 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 32%] Linking CXX shared module ../../../lib/labelengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Generating qrc_drawtool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name drawtool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc +[ 33%] Generating moc_drawtool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= +[ 33%] Linking CXX shared module ../../../lib/forceengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 32%] Built target polygonengine -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend +[ 33%] Built target polygonengine +make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 32%] Generating qrc_manipulatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc -[ 32%] Generating moc_manipulatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters -Scanning dependencies of target selectrotatetool +[ 33%] Generating qrc_autoopttool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name autoopttool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc +Scanning dependencies of target drawtool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build +[ 33%] Generating moc_autoopttool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4887,30 +4877,13 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, - from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: + from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 32%] Generating ui_manipulatesettingswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 32%] Generating qrc_bondcentrictool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name bondcentrictool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc -[ 33%] Generating moc_bondcentrictool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters -Scanning dependencies of target manipulatetool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -[ 34%] Built target wireengine -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4922,64 +4895,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, - from /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 34%] Generating qrc_drawtool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name drawtool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc -[ 34%] Built target labelengine -make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 34%] Generating moc_drawtool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters -[ 34%] Generating moc_skeletontree.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters -[ 34%] Generating qrc_autoopttool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name autoopttool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= -[ 34%] Generating moc_autoopttool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= +[ 33%] Built target forceengine +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= -Scanning dependencies of target autoopttool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, - from /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -Scanning dependencies of target drawtool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build -Scanning dependencies of target bondcentrictool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4990,11 +4915,12 @@ from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, - from /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5006,18 +4932,17 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 34%] Linking CXX shared module ../../../lib/dipoleengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp +Scanning dependencies of target autoopttool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5026,16 +4951,17 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, + from /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 35%] Built target dipoleengine -[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5047,25 +4973,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5077,13 +4991,26 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx +[ 33%] Linking CXX shared module ../../../lib/dipoleengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Linking CXX shared module ../../../lib/ribbonengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 33%] Linking CXX shared module ../../../lib/sphereengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx +[ 33%] Built target dipoleengine +make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5095,28 +5022,43 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 36%] Linking CXX shared module ../../../lib/surfaceengine.so +[ 33%] Generating qrc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc +[ 33%] Generating moc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters +[ 34%] Linking CXX shared module ../../../lib/surfaceengine.so cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 36%] Built target surfaceengine -make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend +[ 34%] Linking CXX shared module ../../../lib/ringengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 +[ 34%] Built target ribbonengine +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 36%] Generating qrc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc -[ 36%] Generating moc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 34%] Generating qrc_clickmeasuretool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc +[ 34%] Generating moc_clickmeasuretool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 34%] Built target sphereengine +make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 34%] Generating qrc_aligntool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name aligntool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc Scanning dependencies of target autorotatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o +[ 34%] Generating moc_aligntool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters +[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -5135,13 +5077,9 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 36%] Linking CXX shared module ../../../lib/simplewireengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= +[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5153,62 +5091,31 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 36%] Built target simplewireengine -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 36%] Generating qrc_clickmeasuretool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc -[ 36%] Generating moc_clickmeasuretool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= -make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 35%] Built target surfaceengine +make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 36%] Generating qrc_aligntool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name aligntool -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc -[ 36%] Generating moc_aligntool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 35%] Generating moc_gl2psextension.cxx make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o +Scanning dependencies of target clickmeasuretool +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build +[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5226,12 +5133,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target clickmeasuretool -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o +[ 35%] Built target ringengine +[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o +make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5249,73 +5155,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 37%] Linking CXX shared module ../../../lib/drawtool.so -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 37%] Built target drawtool -make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 37%] Generating moc_gl2psextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= -[ 37%] Linking CXX shared module ../../../lib/autorotatetool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 35%] Generating moc_networkfetchextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o +[ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -5335,32 +5182,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Linking CXX shared module ../../../lib/selectrotatetool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 38%] Built target autorotatetool -[ 38%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdio.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.h:39, - from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:36: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 38%] Generating moc_networkfetchextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o +[ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5379,41 +5206,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Built target selectrotatetool -[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 38%] Linking CXX shared module ../../../lib/cartoonengine.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 39%] Linking CXX shared module ../../../lib/autoopttool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 39%] Built target cartoonengine -make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx +[ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5425,51 +5219,33 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 39%] Generating ui_supercelldialog.h +[ 36%] Linking CXX shared module ../../../lib/hbondengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 36%] Linking CXX shared module ../../../lib/stickengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 36%] Built target hbondengine +make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 36%] Linking CXX shared module ../../../lib/axesengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 +[ 36%] Generating ui_supercelldialog.h cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui -[ 39%] Generating moc_supercellextension.cxx +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 36%] Generating moc_supercellextension.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx_parameters -[ 39%] Generating moc_supercelldialog.cxx +[ 36%] Generating moc_supercelldialog.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 39%] Built target autoopttool -make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp -[ 39%] Generating ui_shaderdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 39%] Generating moc_shaderextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= -Scanning dependencies of target shaderextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp +[ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5481,18 +5257,25 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 36%] Built target stickengine +make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= +[ 36%] Generating ui_shaderdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui +[ 36%] Generating moc_shaderextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o +[ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -5512,24 +5295,20 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Linking CXX shared module ../../../lib/gl2psextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 37%] Built target axesengine +make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +Scanning dependencies of target shaderextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 37%] Generating ui_fileimportdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui +[ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp +[ 37%] Generating moc_fileimportextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5543,45 +5322,17 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 40%] Linking CXX shared module ../../../lib/clickmeasuretool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 40%] Built target gl2psextension -make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 40%] Generating ui_fileimportdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui -[ 40%] Generating moc_fileimportextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o +[ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -5597,46 +5348,45 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 42%] Linking CXX shared module ../../../lib/networkfetchextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 +[ 38%] Linking CXX shared module ../../../lib/qtaimengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -[ 42%] Built target clickmeasuretool +[ 38%] Built target qtaimengine make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 42%] Generating moc_propextension.cxx +[ 38%] Generating moc_propextension.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters -[ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx +[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 42%] Generating __/tools/moc_skeletontree.cxx +[ 38%] Generating __/tools/moc_skeletontree.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters -[ 43%] Generating moc_propmodel.cxx +[ 38%] Linking CXX shared module ../../../lib/selectrotatetool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 +[ 39%] Generating moc_propmodel.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters -[ 43%] Linking CXX shared module ../../../lib/aligntool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 43%] Built target networkfetchextension -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 39%] Linking CXX shared module ../../../lib/labelengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target propextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build -[ 43%] Generating qrc_cartesianextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name cartesianextension -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp +[ 39%] Built target selectrotatetool In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5651,17 +5401,43 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 43%] Generating moc_cartesianextension.cxx +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 39%] Generating qrc_cartesianextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name cartesianextension -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc +[ 39%] Generating moc_cartesianextension.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters -[ 43%] Generating ui_cartesianeditor.h +[ 39%] Generating ui_cartesianeditor.h cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= +[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning dependencies of target cartesianextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp +[ 39%] Built target labelengine +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5680,23 +5456,28 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 43%] Built target aligntool -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 43%] Generating moc_h2methylextension.cxx +[ 39%] Generating moc_h2methylextension.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters +[ 40%] Linking CXX shared module ../../../lib/wireengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target h2methylextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 43%] Generating qrc_animationextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name animationextension -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc -[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o +[ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp +[ 40%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdio.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.h:39, + from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:36: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5715,34 +5496,45 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 43%] Generating moc_animationextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 40%] Built target wireengine +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 40%] Generating qrc_animationextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name animationextension -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc +[ 40%] Generating moc_animationextension.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx_parameters -[ 43%] Generating moc_animationdialog.cxx +[ 40%] Generating moc_animationdialog.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters -[ 44%] Generating ui_animationdialog.h +[ 41%] Generating ui_animationdialog.h cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp Scanning dependencies of target animationextension +[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, - from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o +[ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp +[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -5752,6 +5544,21 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, @@ -5762,8 +5569,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx +[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5777,30 +5584,24 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx +[ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o +[ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5812,37 +5613,37 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx +[ 42%] Linking CXX shared module ../../../lib/autorotatetool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Linking CXX shared module ../../../lib/shaderextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx +[ 43%] Linking CXX shared module ../../../lib/networkfetchextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5852,21 +5653,35 @@ from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 44%] Linking CXX shared module ../../../lib/fileimportextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 43%] Built target autorotatetool +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 43%] Generating ui_conformersearchdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui +[ 43%] Generating moc_forcefieldextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 44%] Linking CXX shared module ../../../lib/h2methylextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 -[ 44%] Built target shaderextension -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp +[ 43%] Built target networkfetchextension +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 43%] Generating moc_invertchiralextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters +[ 43%] Generating moc_forcefielddialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= +[ 44%] Generating moc_constraintsdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters +Scanning dependencies of target invertchiralextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5874,32 +5689,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 44%] Built target fileimportextension -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 44%] Generating ui_conformersearchdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui -[ 44%] Generating moc_forcefieldextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters -[ 44%] Generating moc_forcefielddialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters -[ 45%] Generating moc_constraintsdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 45%] Built target h2methylextension -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx -[ 46%] Generating moc_constraintsmodel.cxx +[ 44%] Generating moc_constraintsmodel.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5913,30 +5716,15 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Generating moc_invertchiralextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters -[ 46%] Generating moc_conformersearchdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= +[ 44%] Generating moc_conformersearchdialog.cxx cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters -[ 46%] Generating ui_forcefielddialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui -[ 46%] Generating ui_constraintsdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui -Scanning dependencies of target invertchiralextension -[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5945,15 +5733,24 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp +[ 44%] Generating ui_forcefielddialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui +[ 44%] Generating ui_constraintsdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o +[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5962,20 +5759,13 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Linking CXX shared module ../../../lib/supercellextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5987,8 +5777,10 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -5996,7 +5788,7 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -6015,17 +5807,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Built target supercellextension -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Generating ui_vrmldialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui -/build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. -[ 46%] Generating moc_vrmlextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters -[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6034,17 +5817,21 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Generating moc_vrmldialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp +[ 44%] Linking CXX shared module ../../../lib/gl2psextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6056,17 +5843,105 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 44%] Built target gl2psextension +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 44%] Generating ui_vrmldialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui +/build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. +[ 44%] Generating moc_vrmlextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters +[ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 45%] Linking CXX shared module ../../../lib/aligntool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 +[ 45%] Generating moc_vrmldialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 45%] Linking CXX shared module ../../../lib/autoopttool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 45%] Linking CXX shared module ../../../lib/clickmeasuretool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 45%] Linking CXX shared module ../../../lib/fileimportextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel Scanning dependencies of target vrmlextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -6085,22 +5960,66 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 45%] Built target aligntool +make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 45%] Generating ui_insertpeptidedialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui +[ 45%] Generating moc_insertpeptideextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= +[ 45%] Built target fileimportextension +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 45%] Linking CXX shared module ../../../lib/h2methylextension.so +[ 45%] Built target autoopttool +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 45%] Generating moc_hydrogensextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 45%] Generating ui_insertfragmentdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Linking CXX shared module ../../../lib/cartesianextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp +[ 45%] Generating moc_insertfragmentextension.cxx +[ 45%] Built target clickmeasuretool +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters +make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 45%] Generating moc_selectextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters +Scanning dependencies of target insertpeptideextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build +[ 46%] Generating moc_insertfragmentdialog.cxx +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6109,47 +6028,48 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Built target cartesianextension -make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Generating ui_insertpeptidedialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui -[ 46%] Generating moc_insertpeptideextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= -[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx +[ 46%] Generating moc_sortfiltertreeproxymodel.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 46%] Generating moc_hydrogensextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= +Scanning dependencies of target selectextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build Scanning dependencies of target hydrogensextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build -[ 46%] Linking CXX shared module ../../../lib/bondcentrictool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6161,14 +6081,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6181,29 +6100,65 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target insertpeptideextension +[ 46%] Linking CXX shared module ../../../lib/shaderextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 +[ 46%] Built target h2methylextension +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW +[ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx +[ 46%] Generating ui_insertdnadialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +Scanning dependencies of target insertfragmentextension +[ 46%] Generating moc_insertdnaextension.cxx make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp +Scanning dependencies of target insertdnaextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp +[ 46%] Linking CXX shared module ../../../lib/drawtool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6217,13 +6172,24 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 46%] Built target shaderextension +make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 46%] Generating ui_molecularpropdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui +[ 46%] Generating moc_molecularpropextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6235,16 +6201,26 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx +[ 47%] Built target drawtool +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +Scanning dependencies of target molecularpropextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build +[ 47%] Generating ui_pythonterminalwidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 47%] Generating moc_pythonterminal.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6256,11 +6232,48 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 48%] Generating moc_highlighter.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= +[ 48%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx +[ 48%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +Scanning dependencies of target pythonterminal +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6274,36 +6287,49 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 48%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 48%] Generating ui_povraydialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui +[ 48%] Generating moc_povrayextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters +[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx +[ 50%] Generating moc_povraydialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= +[ 50%] Linking CXX shared module ../../../lib/supercellextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +Scanning dependencies of target povrayextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 48%] Built target bondcentrictool -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 48%] Generating ui_insertfragmentdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui -[ 48%] Generating moc_insertfragmentextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters -[ 49%] Generating moc_insertfragmentdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx -[ 49%] Linking CXX shared module ../../../lib/manipulatetool.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6315,20 +6341,27 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 49%] Generating moc_sortfiltertreeproxymodel.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= -[ 49%] Linking CXX shared module ../../../lib/invertchiralextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 50%] Built target supercellextension +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 51%] Generating ui_symmetrydialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui +[ 51%] Generating moc_symmetryextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= +Scanning dependencies of target symmetryextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 51%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6341,17 +6374,13 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target insertfragmentextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6363,26 +6392,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Built target invertchiralextension -make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Generating moc_selectextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= -Scanning dependencies of target selectextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp +[ 51%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6394,59 +6410,83 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx +[ 51%] Linking CXX shared module ../../../lib/bondcentrictool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 52%] Built target bondcentrictool +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 52%] Generating ui_ceviewoptionswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui +[ 53%] Generating moc_crystallographyextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters +[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp +[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp +[ 53%] Generating moc_crystalpastedialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Built target manipulatetool -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx +[ 53%] Generating ui/moc_ceabstractdockwidget.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters +[ 53%] Generating ui/moc_ceabstracteditor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters +[ 53%] Generating ui/moc_cecoordinateeditor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters +[ 53%] Linking CXX shared module ../../../lib/cartesianextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 53%] Generating ui/moc_cematrixeditor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters +[ 53%] Linking CXX shared module ../../../lib/invertchiralextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx +[ 53%] Generating ui/moc_ceparametereditor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6458,18 +6498,67 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Linking CXX shared module ../../../lib/hydrogensextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +[ 53%] Generating ui/moc_ceslabbuilder.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters +[ 53%] Generating ui/moc_cetranslatewidget.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 53%] Built target cartesianextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 53%] Generating ui_tab_cd.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui +[ 53%] Generating moc_spectraextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 53%] Built target invertchiralextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 54%] Generating ui/moc_ceviewoptionswidget.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters +[ 54%] Generating ui_vibrationwidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui +[ 54%] Generating moc_vibrationextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters +[ 54%] Generating ui_crystalpastedialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui +[ 54%] Generating ui_cecoordinateeditor.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui +[ 54%] Generating moc_spectradialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters +[ 54%] Generating ui_cematrixeditor.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui +[ 54%] Generating ui_ceparametereditor.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui +[ 54%] Generating ui_ceslabbuilder.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui +[ 54%] Generating moc_vibrationwidget.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters +[ 54%] Generating ui_cetranslatewidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= +[ 54%] Generating moc_spectratype.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= +[ 55%] Generating moc_abstract_ir.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters +Scanning dependencies of target vibrationextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build +[ 55%] Generating moc_ir.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 56%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp +Scanning dependencies of target crystallographyextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6477,25 +6566,33 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Built target hydrogensextension -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 49%] Generating ui_insertdnadialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui -[ 49%] Generating moc_insertdnaextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx +[ 56%] Generating moc_nmr.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters +[ 56%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 56%] Generating moc_dos.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters +[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6509,29 +6606,50 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target insertdnaextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 56%] Generating moc_uv.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters +[ 56%] Generating moc_cd.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters +[ 56%] Linking CXX shared module ../../../lib/cartoonengine.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 56%] Generating moc_raman.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters +[ 56%] Generating ui_spectradialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui +[ 56%] Generating ui_tab_ir_raman.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui +[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp +[ 57%] Generating ui_tab_nmr.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp +[ 57%] Generating ui_tab_dos.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui +[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp +[ 57%] Generating ui_tab_uv.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6543,18 +6661,20 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Linking CXX shared module ../../../lib/animationextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 57%] Built target cartoonengine +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +[ 58%] Generating ui_orbitalsettingsdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6563,16 +6683,17 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp +[ 58%] Generating moc_orbitalextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6580,26 +6701,23 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Linking CXX shared module ../../../lib/insertpeptideextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 51%] Linking CXX shared module ../../../lib/selectextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o +Scanning dependencies of target spectraextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx -[ 51%] Built target animationextension -make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build +[ 58%] Generating moc_orbitalsettingsdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 58%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6611,22 +6729,16 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 51%] Generating ui_molecularpropdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui -[ 51%] Generating moc_molecularpropextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 51%] Built target selectextension -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx +[ 58%] Generating moc_orbitaltablemodel.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters +[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6634,49 +6746,45 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 59%] Generating moc_orbitalwidget.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters +[ 59%] Generating moc_vdwsurface.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters +[ 59%] Generating qtiocompressor/moc_qtiocompressor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters +[ 59%] Generating moc_htmldelegate.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters +[ 59%] Linking CXX shared module ../../../lib/hydrogensextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 59%] Generating ui_orbitalwidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= +Scanning dependencies of target orbitalextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 51%] Built target insertpeptideextension -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -Scanning dependencies of target molecularpropextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build +[ 59%] Linking CXX shared module ../../../lib/selectextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 59%] Built target hydrogensextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 59%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp +[ 59%] Generating ui_surfacedialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6688,14 +6796,27 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +[ 59%] Generating moc_surfaceextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters +[ 59%] Generating moc_surfacedialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= +[ 59%] Built target selectextension +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 59%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx +[ 59%] Generating ui_swcntbuilderwidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6704,27 +6825,28 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp +[ 59%] Generating moc_swcntbuilderextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters +[ 59%] Generating moc_swcntbuilderwidget.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters +Scanning dependencies of target surfaceextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +[ 59%] Generating moc_avotubegen.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= +[ 59%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6736,13 +6858,18 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx +Scanning dependencies of target swcntbuilderextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6750,17 +6877,16 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6776,26 +6902,35 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, - from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, - from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 60%] Linking CXX shared module ../../../lib/molecularpropextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Built target molecularpropextension +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Generating moc_qtaimextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= +Scanning dependencies of target qtaimextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6804,14 +6939,18 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx +[ 60%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6823,15 +6962,12 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -6846,11 +6982,16 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 60%] Linking CXX shared module ../../../../lib/symmetryextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a +[ 60%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6859,36 +7000,37 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Built target symmetryextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Generating ui_gamessefpmatchdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx +[ 60%] Generating moc_inputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters +[ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6896,63 +7038,73 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Linking CXX shared module ../../../lib/forcefieldextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx +[ 60%] Generating moc_gamessextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, - from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, - from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx +[ 61%] Generating moc_gamessinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters +[ 61%] Generating moc_gamesshighlighter.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters +[ 61%] Generating moc_gamessefpmatchdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters +[ 61%] Generating ui_gamessinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +[ 61%] Linking CXX shared module ../../../lib/insertdnaextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx +Scanning dependencies of target gamessextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 61%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6964,71 +7116,23 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 52%] Linking CXX shared module ../../../lib/insertdnaextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 52%] Generating ui_pythonterminalwidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui -[ 52%] Generating moc_pythonterminal.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 52%] Built target forcefieldextension -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 52%] Generating ui_povraydialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui -[ 52%] Generating moc_povrayextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters -[ 53%] Generating moc_highlighter.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 54%] Generating ui_symmetrydialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= -[ 54%] Generating moc_symmetryextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters -[ 55%] Linking CXX shared module ../../../lib/insertfragmentextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 -[ 56%] Generating moc_povraydialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 56%] Built target insertdnaextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend -[ 56%] Generating ui_ceviewoptionswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 56%] Generating ui_tab_cd.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui -[ 57%] Generating moc_crystallographyextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters -[ 57%] Generating moc_spectraextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters -Scanning dependencies of target symmetryextension -Scanning dependencies of target pythonterminal make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 61%] Built target insertdnaextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -[ 57%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp +[ 61%] Generating ui_lammpsinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui +[ 61%] Generating moc_inputfileextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters +[ 61%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7040,12 +7144,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx +[ 62%] Generating moc_abinitinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7059,103 +7166,19 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 57%] Linking CXX shared module ../../../lib/vrmlextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 -[ 57%] Generating moc_crystalpastedialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters -[ 57%] Generating moc_spectradialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 57%] Generating ui/moc_ceabstractdockwidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters -[ 57%] Generating moc_spectratype.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters -[ 57%] Generating ui/moc_ceabstracteditor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters -[ 57%] Generating ui/moc_cecoordinateeditor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters -Scanning dependencies of target povrayextension -[ 58%] Generating moc_abstract_ir.cxx -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 58%] Generating ui/moc_cematrixeditor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters -[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 58%] Built target insertfragmentextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend -[ 58%] Generating moc_ir.cxx -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters -[ 58%] Generating ui_vibrationwidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui -[ 58%] Generating ui/moc_ceparametereditor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters -[ 58%] Generating moc_vibrationextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters -[ 58%] Generating moc_nmr.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters -[ 58%] Generating ui/moc_ceslabbuilder.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters -[ 58%] Generating ui/moc_cetranslatewidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters -[ 58%] Generating moc_vibrationwidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters -[ 58%] Generating moc_dos.cxx -[ 58%] Linking CXX shared module ../../../lib/molecularpropextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -[ 59%] Generating ui/moc_ceviewoptionswidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= -[ 59%] Generating moc_uv.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters -[ 59%] Generating ui_crystalpastedialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 59%] Generating ui_cecoordinateeditor.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui -[ 59%] Built target vrmlextension -[ 59%] Generating ui_cematrixeditor.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui -[ 59%] Generating ui_ceparametereditor.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui -[ 59%] Generating ui_ceslabbuilder.h -[ 59%] Generating moc_cd.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui -[ 59%] Generating ui_cetranslatewidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= -[ 59%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx +[ 62%] Generating moc_daltoninputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters +[ 62%] Generating moc_gamessukinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters +[ 62%] Generating moc_gaussianinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters +[ 62%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7168,27 +7191,21 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 59%] Generating moc_raman.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters -Scanning dependencies of target vibrationextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 59%] Built target molecularpropextension -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 59%] Generating ui_spectradialog.h -[ 60%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp -[ 61%] Generating ui_orbitalsettingsdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui +[ 62%] Generating moc_molproinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters +[ 62%] Generating moc_mopacinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters +[ 62%] Generating moc_nwcheminputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters +[ 62%] Generating moc_psi4inputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7198,80 +7215,21 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 61%] Generating ui_tab_ir_raman.h -[ 61%] Generating moc_orbitalextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters -[ 62%] Generating ui_tab_nmr.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui -[ 62%] Generating moc_orbitalsettingsdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters -[ 62%] Generating ui_tab_dos.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui -[ 62%] Generating ui_tab_uv.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= -[ 62%] Generating moc_orbitaltablemodel.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 62%] Generating moc_orbitalwidget.cxx -[ 62%] Generating ui_surfacedialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters -[ 62%] Generating moc_surfaceextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters -[ 62%] Linking CXX shared module ../../../lib/propextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 62%] Generating moc_surfacedialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters -[ 62%] Generating moc_vdwsurface.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters -[ 62%] Generating moc_vdwsurface.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters -[ 62%] Generating qtiocompressor/moc_qtiocompressor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters -[ 62%] Generating moc_htmldelegate.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters -[ 62%] Generating qtiocompressor/moc_qtiocompressor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= -[ 62%] Generating ui_orbitalwidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= -Scanning dependencies of target crystallographyextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target orbitalextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build -Scanning dependencies of target surfaceextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 62%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 62%] Generating moc_qcheminputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters +[ 62%] Generating moc_teracheminputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters +[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx +[ 63%] Generating moc_lammpsinputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7286,16 +7244,17 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp -Scanning dependencies of target spectraextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build +[ 63%] Generating ui_abinitinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp +[ 63%] Generating ui_gaussianinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7308,46 +7267,41 @@ from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp -[ 62%] Built target propextension -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +[ 63%] Generating ui_daltoninputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui +[ 63%] Generating ui_gamessukinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui +[ 63%] Generating ui_molproinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui +[ 63%] Generating ui_mopacinputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui +[ 63%] Generating ui_nwcheminputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui +[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 62%] Generating ui_swcntbuilderwidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui -[ 62%] Generating moc_swcntbuilderextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters -[ 62%] Generating moc_swcntbuilderwidget.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters -[ 62%] Generating moc_avotubegen.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp +[ 64%] Generating ui_psi4inputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui +[ 65%] Generating ui_qcheminputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui +[ 65%] Generating ui_teracheminputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= +[ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7359,13 +7313,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp +[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7377,20 +7331,20 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target swcntbuilderextension +[ 65%] Linking CXX shared module ../../../lib/insertpeptideextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 +Scanning dependencies of target inputfileextension +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build -[ 62%] Linking CXX shared module ../../../../lib/symmetryextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a -[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build +[ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7398,23 +7352,34 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 63%] Built target symmetryextension -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 63%] Generating moc_qtaimextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= -[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp +[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp +[ 66%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7426,13 +7391,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp +[ 66%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7444,47 +7410,74 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 66%] Built target insertpeptideextension +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 66%] Generating ui_orcaspectra.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui +[ 66%] Generating moc_orcaextension.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters +[ 66%] Generating moc_orcainputdialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters +[ 66%] Generating moc_orcaanalysedialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters +[ 67%] Generating moc_orcaspectra.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters +[ 67%] Generating ui_orcainputdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. +[ 67%] Generating ui_orcaanalysedialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui +/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= +[ 67%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, + from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, + from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp -Scanning dependencies of target qtaimextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build +[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7497,17 +7490,20 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +Scanning dependencies of target orcaextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build +[ 67%] Linking CXX shared module ../../../lib/manipulatetool.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 63%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp +[ 67%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7519,15 +7515,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7539,13 +7533,25 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 67%] Built target manipulatetool +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 67%] Generating moc_smartscolor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= +Scanning dependencies of target smartscolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 67%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7553,18 +7559,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7572,17 +7577,19 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx +[ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7597,13 +7604,14 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp +[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7613,18 +7621,15 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7632,17 +7637,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp +[ 67%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7656,13 +7675,13 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7674,14 +7693,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: + from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7689,17 +7707,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp +[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7709,13 +7727,13 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7727,29 +7745,29 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp +[ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx -[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7759,12 +7777,33 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx +[ 67%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7776,13 +7815,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7792,28 +7829,33 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, + from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, + from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp +[ 67%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7821,19 +7863,19 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx +[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7843,85 +7885,42 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Linking CXX shared module ../../../lib/pythonterminal.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 -[ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp +[ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 65%] Linking CXX shared module ../../../../lib/vibrationextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 65%] Built target pythonterminal -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 65%] Generating ui_gamessefpmatchdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui -[ 65%] Built target vibrationextension -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 65%] Generating moc_inputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters -[ 65%] Generating ui_lammpsinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui -[ 65%] Generating moc_inputfileextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters -[ 65%] Generating moc_gamessextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters -[ 65%] Generating moc_inputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters -[ 66%] Generating moc_gamessinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters -[ 66%] Generating moc_gamesshighlighter.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters -[ 67%] Generating moc_abinitinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters -[ 67%] Generating moc_gamessefpmatchdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters -[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Generating moc_daltoninputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx -[ 67%] Generating ui_gamessinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7939,81 +7938,69 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Generating moc_gamessukinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= -[ 67%] Generating moc_gaussianinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters -[ 67%] Generating moc_molproinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters -[ 67%] Generating moc_mopacinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters -[ 67%] Generating moc_nwcheminputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters -[ 67%] Generating moc_psi4inputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters -[ 67%] Generating moc_qcheminputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters -[ 67%] Generating moc_teracheminputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters -[ 68%] Generating moc_lammpsinputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters -[ 68%] Generating ui_abinitinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui -[ 68%] Generating ui_gaussianinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui -[ 68%] Generating ui_daltoninputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui -[ 68%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a -[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp +[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Generating ui_gamessukinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui -[ 68%] Generating ui_molproinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui -[ 68%] Generating ui_mopacinputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui -[ 68%] Generating ui_nwcheminputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui -[ 68%] Generating ui_psi4inputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui -[ 69%] Generating ui_qcheminputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui -[ 69%] Generating ui_teracheminputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= -Scanning dependencies of target gamessextension +[ 68%] Linking CXX shared module ../../../lib/insertfragmentextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 +[ 68%] Linking CXX shared module ../../../lib/vrmlextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 69%] Linking CXX shared module ../../../lib/animationextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 +[ 69%] Linking CXX shared module ../../../lib/smartscolor.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build -[ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Built target smartscolor +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 69%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp +[ 69%] Built target insertfragmentextension +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Generating moc_customcolor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters +[ 69%] Generating moc_distancecolor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Built target vrmlextension +make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Generating ui_residuecolorsettings.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /build/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui +[ 69%] Generating moc_residuecolor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters +Scanning dependencies of target distancecolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build +Scanning dependencies of target customcolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp +[ 69%] Built target animationextension +[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o +make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8025,21 +8012,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp -[ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8051,27 +8025,29 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 69%] Generating moc_atomindexcolor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= +Scanning dependencies of target residuecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 70%] Built target swcntbuilderextension -[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx +make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build +Scanning dependencies of target atomindexcolor +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp +[ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8079,21 +8055,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target inputfileextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8105,43 +8075,36 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx +[ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp +[ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: + from /usr/include/c++/8/cmath:41, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp +[ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8149,21 +8112,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Linking CXX shared module ../../../lib/povrayextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx +[ 69%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8175,23 +8134,34 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp -[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o +[ 69%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx +[ 69%] Linking CXX shared module ../../../../lib/vibrationextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8203,14 +8173,18 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o +[ 69%] Built target vibrationextension +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx +make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8218,47 +8192,28 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 69%] Generating moc_chargecolor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= +[ 69%] Linking CXX shared module ../../../lib/pythonterminal.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 +Scanning dependencies of target chargecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 70%] Built target povrayextension -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 70%] Generating ui_orcaspectra.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui -[ 70%] Generating moc_orcaextension.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters -[ 70%] Generating moc_orcainputdialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters -[ 70%] Generating moc_orcaanalysedialog.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters -[ 71%] Generating moc_orcaspectra.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters -[ 71%] Generating ui_orcainputdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. -[ 71%] Generating ui_orcaanalysedialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui -/build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= -[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8267,14 +8222,16 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp +[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8283,16 +8240,17 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx +[ 71%] Built target pythonterminal In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8304,13 +8262,18 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 71%] Generating moleculelist.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= +[ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8319,19 +8282,32 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target orcaextension +Scanning dependencies of target python-module make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 71%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp +[ 72%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8340,16 +8316,14 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp:26: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp +[ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8361,15 +8335,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx +[ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8381,16 +8353,45 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx +[ 72%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 72%] Linking CXX shared module ../../../lib/customcolor.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 +[ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8402,16 +8403,14 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Linking CXX shared module ../../../../lib/surfaceextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -[ 71%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx +[ 72%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8423,29 +8422,79 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 72%] Built target customcolor +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 72%] Generating avogadro_zh_TW.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.qm +[ 72%] Generating aboutdialog.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/aboutdialog.moc_parameters +[ 72%] Generating addenginedialog.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/addenginedialog.moc_parameters +[ 72%] Generating application.moc +[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/application.moc_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp +[ 73%] Linking CXX shared module ../../../lib/atomindexcolor.so +[ 73%] Generating detachedview.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/detachedview.moc_parameters +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 73%] Generating enginecolorswidget.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters +[ 73%] Generating engineitemdelegate.moc +[ 73%] Linking CXX shared module ../../../lib/distancecolor.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 73%] Generating engineitemmodel.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineitemmodel.moc_parameters +[ 73%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 74%] Generating enginelistview.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/enginelistview.moc_parameters +[ 74%] Built target atomindexcolor +[ 74%] Generating engineprimitiveswidget.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters +[ 74%] Generating engineviewwidget.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineviewwidget.moc_parameters +[ 74%] Generating flattabwidget.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/flattabwidget.moc_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 74%] Built target distancecolor +[ 74%] Generating glgraphicsview.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/glgraphicsview.moc_parameters +[ 74%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o +[ 74%] Generating importdialog.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/importdialog.moc_parameters +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8455,16 +8504,170 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 74%] Generating mainwindow.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/mainwindow.moc_parameters +[ 74%] Generating pluginitemmodel.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters +[ 74%] Linking CXX shared module ../../../lib/povrayextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 74%] Generating pluginlistview.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/pluginlistview.moc_parameters +[ 75%] Generating pluginsettings.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/pluginsettings.moc_parameters +[ 75%] Generating primitiveitemmodel.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters +[ 75%] Generating primitivetreeview.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/primitivetreeview.moc_parameters +[ 75%] Generating projecttreeeditor.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 71%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx +[ 75%] Built target swcntbuilderextension +[ 75%] Generating projecttreemodel.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/projecttreemodel.moc_parameters +[ 75%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 75%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx +[ 75%] Generating projecttreemodeldelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 75%] Generating savedialog.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/savedialog.moc_parameters +[ 75%] Generating settingsdialog.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/settingsdialog.moc_parameters +[ 75%] Generating atomdelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/atomdelegate.moc_parameters +[ 76%] Generating bonddelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/bonddelegate.moc_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 76%] Built target povrayextension +[ 76%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 76%] Generating labeldelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/labeldelegate.moc_parameters +[ 76%] Generating moleculedelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/moleculedelegate.moc_parameters +[ 76%] Generating residuedelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/residuedelegate.moc_parameters +[ 76%] Generating selectiondelegate.moc +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/selectiondelegate.moc_parameters +[ 76%] Generating ui_addenginedialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_addenginedialog.h /build/avogadro-1.2.0/avogadro/src/addenginedialog.ui +[ 76%] Generating ui_enginecolorswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_enginecolorswidget.h /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui +[ 76%] Generating ui_engineprimitiveswidget.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui +[ 76%] Generating ui_importdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_importdialog.h /build/avogadro-1.2.0/avogadro/src/importdialog.ui +[ 76%] Generating ui_mainwindow.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_mainwindow.h /build/avogadro-1.2.0/avogadro/src/mainwindow.ui +[ 77%] Generating ui_pluginsettings.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_pluginsettings.h /build/avogadro-1.2.0/avogadro/src/pluginsettings.ui +[ 77%] Generating ui_projecttreeeditor.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_projecttreeeditor.h /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui +[ 77%] Generating ui_settingsdialog.h +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_settingsdialog.h /build/avogadro-1.2.0/avogadro/src/settingsdialog.ui +[ 77%] Generating qrc_avogadro.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name avogadro -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx /build/avogadro-1.2.0/avogadro/src/avogadro.qrc +[ 77%] Generating avogadro_af.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/af.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts +[ 77%] Generating avogadro_ar.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ar.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.qm +[ 77%] Generating avogadro_bg.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/bg.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 77%] Generating avogadro_ca.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.qm +[ 77%] Generating avogadro_ca@valencia.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.qm +[ 78%] Generating avogadro_cs.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/cs.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.qm +[ 78%] Generating avogadro_da.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/da.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.qm +[ 78%] Linking CXX shared module ../../../lib/residuecolor.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 +[ 78%] Generating avogadro_de.qm +[ 78%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/de.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.qm In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8476,20 +8679,31 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Built target surfaceextension -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 71%] Generating moc_smartscolor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= -[ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 78%] Generating avogadro_el.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/el.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.qm +[ 78%] Generating avogadro_en_AU.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts +[ 78%] Generating avogadro_en_CA.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts +[ 78%] Linking CXX shared module ../../../lib/chargecolor.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 78%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -8507,15 +8721,60 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target smartscolor +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.qm +[ 78%] Generating avogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp -[ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp -[ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o +[ 78%] Generating avogadro_es.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/es.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts +[ 78%] Built target residuecolor +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 78%] Generating avogadro_et.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/et.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 78%] Built target chargecolor +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.qm +[ 78%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 79%] Generating avogadro_fi.qm +[ 79%] Generating avogadro_eu.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/eu.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts +[ 79%] Generating avogadro_fr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.qm +[ 79%] Generating avogadro_fr_CA.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.qm +[ 79%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8527,12 +8786,53 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp +[ 79%] Generating avogadro_gl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/gl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts +[ 79%] Generating avogadro_he.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/he.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 79%] Generating avogadro_hi.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.qm +[ 79%] Generating avogadro_hr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts +[ 79%] Generating avogadro_hu.qm +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts +[ 79%] Generating avogadro_id.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/id.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 80%] Generating avogadro_it.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/it.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 80%] Generating avogadro_ja.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ja.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.qm +[ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8544,36 +8844,197 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 81%] Generating avogadro_kn.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/kn.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.qm +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.qm +[ 81%] Generating avogadro_ko.qm +[ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ko.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx +[ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/iostream:38, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 72%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.qm +[ 81%] Generating avogadro_ms.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ms.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 81%] Generating avogadro_nb.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nb.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.qm +[ 81%] Generating avogadro_nl.qm +[ 81%] Generating avogadro_oc.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/oc.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.qm +[ 81%] Generating avogadro_pl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts +[ 82%] Generating avogadro_pt.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.qm +[ 82%] Generating avogadro_pt_BR.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts +[ 82%] Generating avogadro_ru.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ru.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.qm +[ 82%] Generating avogadro_sk.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts +[ 82%] Generating avogadro_sl.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 82%] Linking CXX shared module ../../../lib/propextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.qm +[ 82%] Generating avogadro_sq.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sq.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts +[ 82%] Generating avogadro_sr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 82%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.qm +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.qm +[ 82%] Generating avogadro_sv.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sv.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 82%] Generating avogadro_ta.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ta.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.qm +[ 82%] Generating avogadro_te.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/te.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts +[ 83%] Generating avogadro_th.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/th.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.qm +[ 83%] Generating avogadro_tr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/tr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts +[ 83%] Generating avogadro_ug.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ug.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.qm +[ 83%] Generating avogadro_uk.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/uk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts +[ 83%] Generating avogadro_vi.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/vi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.qm +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +[ 83%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx +[ 83%] Built target propextension +[ 83%] Generating avogadro_zh_CN.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 72%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8585,13 +9046,14 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 72%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp +[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8600,18 +9062,18 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 73%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx +Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.qm +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= +[ 83%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8619,51 +9081,59 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp +[ 83%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 73%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx +Scanning dependencies of target avogadro-app +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build +[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 83%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8671,17 +9141,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, + from /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 73%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx +[ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8689,98 +9159,66 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function 'void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)': -/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: '%s' directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] - sprintf( Out, "CITYP=%s ", textVal ); - ^~~~~~~~~~~ ~~~~~~~ -In file included from /usr/include/stdio.h:873, - from /usr/include/c++/8/cstdio:42, - from /usr/include/c++/8/ext/string_conversions.h:43, - from /usr/include/c++/8/bits/basic_string.h:6400, - from /usr/include/c++/8/string:52, - from /usr/include/c++/8/bits/locale_classes.h:40, - from /usr/include/c++/8/bits/ios_base.h:41, - from /usr/include/c++/8/ios:42, - from /usr/include/c++/8/ostream:38, - from /usr/include/c++/8/iostream:39, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 187 bytes into a destination of size 180 - return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx +[ 83%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qhash.h:45, - from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_addenginedialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 73%] Linking CXX shared module ../../../lib/smartscolor.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 73%] Built target smartscolor -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 73%] Generating moc_customcolor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= -Scanning dependencies of target customcolor -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp +[ 83%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp +[ 83%] Linking CXX shared module ../../../../lib/surfaceextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 +[ 83%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx +[ 84%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8789,28 +9227,42 @@ from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +[ 84%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: + from /usr/include/qt4/QtCore/QtGlobal:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 84%] Built target surfaceextension +[ 85%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, @@ -8831,8 +9283,31 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp +[ 85%] Linking CXX shared module ../../../../lib/orbitalextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /build/avogadro-1.2.0/avogadro/src/application.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qcoreapplication.h:45, + from /usr/include/qt4/QtGui/qapplication.h:45, + from /usr/include/qt4/QtGui/QApplication:1, + from /build/avogadro-1.2.0/avogadro/src/application.h:25, + from /build/avogadro-1.2.0/avogadro/src/application.cpp:22: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 86%] Built target orbitalextension +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/detachedview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8842,16 +9317,31 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/avogadro/src/detachedview.h:28, + from /build/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx +[ 86%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 86%] Linking CXX shared module ../../../lib/forcefieldextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 86%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8863,13 +9353,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /build/avogadro-1.2.0/avogadro/src/editcommands.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8878,15 +9370,15 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/avogadro/src/editcommands.h:28, + from /build/avogadro-1.2.0/avogadro/src/editcommands.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx +[ 86%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8895,26 +9387,21 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Linking CXX shared module ../../../lib/customcolor.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Built target customcolor -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Generating moc_distancecolor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= -[ 74%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp +[ 86%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx +[ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8922,41 +9409,85 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target distancecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp +[ 86%] Built target forcefieldextension +[ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp:25: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_enginecolorswidget.h:12, + from /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.h:28, + from /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp -[ 74%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8964,16 +9495,37 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.h:28, + from /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8986,51 +9538,47 @@ from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Linking CXX shared module ../../../../lib/orbitalextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtCore/QModelIndex:1, + from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, + from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp +[ 86%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/QtGlobal:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9040,93 +9588,50 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: + from /usr/include/qt4/QtGui/qframe.h:45, + from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, + from /usr/include/qt4/QtGui/qabstractitemview.h:45, + from /usr/include/qt4/QtGui/qlistview.h:45, + from /usr/include/qt4/QtGui/QListView:1, + from /build/avogadro-1.2.0/avogadro/src/enginelistview.h:25, + from /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, + from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, + from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Built target orbitalextension -make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Generating ui_residuecolorsettings.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /build/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui -[ 74%] Generating moc_residuecolor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters -[ 74%] Linking CXX shared module ../../../../lib/spectraextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 74%] Linking CXX shared module ../../../lib/distancecolor.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Built target distancecolor -make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Generating moc_atomindexcolor.cxx -Scanning dependencies of target residuecolor -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= -[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp +[ 86%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp:25: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Generating moc_chargecolor.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= -Scanning dependencies of target atomindexcolor -Scanning dependencies of target chargecolor -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 75%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp -[ 75%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9134,15 +9639,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 86%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9150,17 +9657,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9170,16 +9678,15 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx +[ 86%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9187,32 +9694,34 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, + from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp +[ 86%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9220,18 +9729,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9243,37 +9752,30 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Built target spectraextension -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 76%] Generating moleculelist.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= -[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx +[ 87%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp +[ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9282,82 +9784,39 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, + from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 77%] Linking CXX shared module ../../../lib/chargecolor.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 77%] Linking CXX shared module ../../../lib/atomindexcolor.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 77%] Built target chargecolor -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend -[ 77%] Built target atomindexcolor -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 77%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp -[ 77%] Generating avogadro_zh_TW.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts +[ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: + from /usr/include/qt4/QtCore/qmetatype.h:45, + from /usr/include/qt4/QtGui/qgraphicsview.h:45, + from /usr/include/qt4/QtGui/QGraphicsView:1, + from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, + from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.qm -[ 77%] Generating aboutdialog.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/aboutdialog.moc_parameters -[ 77%] Generating addenginedialog.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/addenginedialog.moc_parameters -[ 77%] Generating application.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/application.moc_parameters -[ 77%] Generating detachedview.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/detachedview.moc_parameters -[ 77%] Generating enginecolorswidget.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters -[ 77%] Generating engineitemdelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters -Scanning dependencies of target python-module -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build -[ 77%] Linking CXX shared module ../../../lib/residuecolor.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 77%] Generating engineitemmodel.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineitemmodel.moc_parameters -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/iostream:38, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp -[ 79%] Generating enginelistview.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/enginelistview.moc_parameters +[ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9369,227 +9828,58 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 79%] Generating engineprimitiveswidget.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters -[ 79%] Generating engineviewwidget.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/engineviewwidget.moc_parameters -[ 79%] Generating flattabwidget.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/flattabwidget.moc_parameters -[ 79%] Generating glgraphicsview.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/glgraphicsview.moc_parameters -[ 79%] Generating importdialog.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/importdialog.moc_parameters -[ 79%] Generating mainwindow.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/mainwindow.moc_parameters -[ 79%] Generating pluginitemmodel.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters -[ 79%] Generating pluginlistview.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/pluginlistview.moc_parameters -[ 80%] Generating pluginsettings.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/pluginsettings.moc_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 80%] Built target residuecolor -[ 80%] Generating primitiveitemmodel.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters -[ 80%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx +[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 80%] Generating primitivetreeview.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/primitivetreeview.moc_parameters -[ 80%] Generating projecttreeeditor.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters -[ 80%] Generating projecttreemodel.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/projecttreemodel.moc_parameters -[ 80%] Generating projecttreemodeldelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters -[ 80%] Generating savedialog.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/savedialog.moc_parameters -[ 80%] Generating settingsdialog.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/settingsdialog.moc_parameters -[ 80%] Generating atomdelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/atomdelegate.moc_parameters -[ 81%] Generating bonddelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/bonddelegate.moc_parameters -[ 81%] Generating labeldelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/labeldelegate.moc_parameters -[ 81%] Generating moleculedelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/moleculedelegate.moc_parameters -[ 81%] Generating residuedelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/residuedelegate.moc_parameters -[ 81%] Generating selectiondelegate.moc -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/selectiondelegate.moc_parameters -[ 81%] Generating ui_addenginedialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_addenginedialog.h /build/avogadro-1.2.0/avogadro/src/addenginedialog.ui -[ 81%] Generating ui_enginecolorswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_enginecolorswidget.h /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui -[ 81%] Generating ui_engineprimitiveswidget.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui -[ 81%] Generating ui_importdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_importdialog.h /build/avogadro-1.2.0/avogadro/src/importdialog.ui -[ 81%] Generating ui_mainwindow.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_mainwindow.h /build/avogadro-1.2.0/avogadro/src/mainwindow.ui -[ 82%] Generating ui_pluginsettings.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_pluginsettings.h /build/avogadro-1.2.0/avogadro/src/pluginsettings.ui -[ 82%] Generating ui_projecttreeeditor.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_projecttreeeditor.h /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui -[ 82%] Generating ui_settingsdialog.h -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_settingsdialog.h /build/avogadro-1.2.0/avogadro/src/settingsdialog.ui -[ 82%] Generating qrc_avogadro.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name avogadro -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx /build/avogadro-1.2.0/avogadro/src/avogadro.qrc -[ 82%] Generating avogadro_af.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/af.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_af.qm -[ 82%] Generating avogadro_ar.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ar.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ar.qm -[ 82%] Generating avogadro_bg.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/bg.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_bg.qm -[ 82%] Generating avogadro_ca.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts -[ 82%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp +[ 89%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_importdialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 82%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp +[ 89%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca.qm -[ 82%] Generating avogadro_ca@valencia.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.qm -[ 83%] Generating avogadro_cs.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/cs.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_cs.qm -[ 83%] Generating avogadro_da.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/da.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_da.qm -[ 83%] Generating avogadro_de.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/de.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_de.qm -[ 83%] Generating avogadro_el.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/el.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_el.qm -[ 83%] Generating avogadro_en_AU.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.qm -[ 83%] Generating avogadro_en_CA.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.qm -[ 83%] Generating avogadro_en_GB.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.qm -[ 83%] Generating avogadro_es.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/es.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_es.qm -[ 83%] Generating avogadro_et.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/et.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_et.qm -[ 83%] Generating avogadro_eu.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/eu.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_eu.qm -[ 84%] Generating avogadro_fi.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fi.qm -[ 84%] Generating avogadro_fr.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr.qm -[ 84%] Generating avogadro_fr_CA.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.qm -[ 84%] Generating avogadro_gl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/gl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts -[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp +[ 89%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9601,28 +9891,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: + from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_gl.qm -[ 85%] Generating avogadro_he.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/he.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_he.qm -[ 85%] Generating avogadro_hi.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9635,50 +9909,30 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hi.qm -[ 85%] Generating avogadro_hr.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hr.qm -[ 85%] Generating avogadro_hu.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_hu.qm -[ 85%] Generating avogadro_id.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/id.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_id.qm -[ 86%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o -[ 86%] Generating avogadro_it.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/it.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: +[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp +[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/color.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -9688,21 +9942,27 @@ from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_it.qm -[ 86%] Generating avogadro_ja.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ja.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 86%] Generating avogadro_kn.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/kn.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 87%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9712,105 +9972,29 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ja.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_kn.qm -[ 87%] Generating avogadro_ko.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ko.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts -[ 87%] Generating avogadro_ms.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ms.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ko.qm -[ 87%] Generating avogadro_nb.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nb.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ms.qm -[ 87%] Generating avogadro_nl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nb.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 87%] Generating avogadro_oc.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/oc.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_nl.qm -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 87%] Generating avogadro_pl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_oc.qm -[ 87%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qhash.h:45, + from /usr/include/qt4/QtCore/QHash:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pl.qm -[ 88%] Generating avogadro_pt.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt.qm -[ 88%] Generating avogadro_pt_BR.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.qm -[ 88%] Generating avogadro_ru.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ru.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ru.qm -[ 88%] Generating avogadro_sk.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sk.qm -[ 88%] Generating avogadro_sl.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sl.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 88%] Linking CXX shared module ../../../../lib/qtaimextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sl.qm -[ 88%] Generating avogadro_sq.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sq.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sq.qm -[ 88%] Generating avogadro_sr.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9822,62 +10006,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sr.qm -[ 88%] Generating avogadro_sv.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sv.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_sv.qm -[ 88%] Generating avogadro_ta.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ta.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ta.qm -[ 88%] Generating avogadro_te.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/te.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_te.qm -[ 89%] Generating avogadro_th.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/th.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_th.qm -[ 89%] Generating avogadro_tr.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/tr.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_tr.qm -[ 89%] Generating avogadro_ug.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ug.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_ug.qm -[ 89%] Generating avogadro_uk.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/uk.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_uk.qm -[ 89%] Generating avogadro_vi.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/vi.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_vi.qm -[ 89%] Generating avogadro_zh_CN.qm -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts -Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx +[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9887,16 +10024,16 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx +[ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9908,31 +10045,55 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 89%] Built target qtaimextension -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.qm +/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function 'void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)': +/build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: '%s' directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] + sprintf( Out, "CITYP=%s ", textVal ); + ^~~~~~~~~~~ ~~~~~~~ +In file included from /usr/include/stdio.h:873, + from /usr/include/c++/8/cstdio:42, + from /usr/include/c++/8/ext/string_conversions.h:43, + from /usr/include/c++/8/bits/basic_string.h:6400, + from /usr/include/c++/8/string:52, + from /usr/include/c++/8/bits/locale_classes.h:40, + from /usr/include/c++/8/bits/ios_base.h:41, + from /usr/include/c++/8/ios:42, + from /usr/include/c++/8/ostream:38, + from /usr/include/c++/8/iostream:39, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 187 bytes into a destination of size 180 + return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9945,15 +10106,16 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx +[ 90%] Linking CXX shared module ../../../../lib/qtaimextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9965,13 +10127,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, + from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, + from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9983,14 +10146,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, + from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, + from /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9998,20 +10161,23 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 90%] Built target qtaimextension +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10023,14 +10189,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, + from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, + from /build/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, + from /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10042,18 +10207,14 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target avogadro-app -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp -[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10065,45 +10226,30 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, - from /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx +[ 90%] Linking CXX shared module ../../../../lib/spectraextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10111,34 +10257,36 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtCore/QAbstractItemModel:1, + from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, + from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Linking CXX shared module ../../../../lib/gamessextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_addenginedialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qframe.h:45, + from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, + from /usr/include/qt4/QtGui/qabstractitemview.h:45, + from /usr/include/qt4/QtGui/qtreeview.h:45, + from /usr/include/qt4/QtGui/QTreeView:1, + from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, + from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10150,15 +10298,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, + from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx +[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10170,52 +10316,16 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 90%] Built target gamessextension -[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 90%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx +[ 91%] Built target spectraextension +[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10227,34 +10337,15 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /build/avogadro-1.2.0/avogadro/src/application.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qcoreapplication.h:45, - from /usr/include/qt4/QtGui/qapplication.h:45, - from /usr/include/qt4/QtGui/QApplication:1, - from /build/avogadro-1.2.0/avogadro/src/application.h:25, - from /build/avogadro-1.2.0/avogadro/src/application.cpp:22: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Linking CXX shared module ../../../../lib/orcaextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp +[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10269,13 +10360,15 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx +[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx +[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10283,18 +10376,16 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/detachedview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10302,16 +10393,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/avogadro/src/detachedview.h:28, - from /build/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10319,20 +10414,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, + from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o -[ 91%] Built target orcaextension -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /build/avogadro-1.2.0/avogadro/src/editcommands.cpp +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10341,33 +10433,18 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/avogadro/src/editcommands.h:28, - from /build/avogadro-1.2.0/avogadro/src/editcommands.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_enginecolorswidget.h:12, - from /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.h:28, - from /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp:25: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, + from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx -[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx +[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o +[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10375,13 +10452,13 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -10397,14 +10474,14 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10413,72 +10490,49 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.h:28, - from /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/color.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/savedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: + from /usr/include/qt4/QtCore/qchar.h:45, + from /usr/include/qt4/QtCore/qstring.h:45, + from /usr/include/qt4/QtCore/qdir.h:45, + from /usr/include/qt4/QtGui/qfiledialog.h:45, + from /usr/include/qt4/QtGui/QFileDialog:1, + from /build/avogadro-1.2.0/avogadro/src/savedialog.h:25, + from /build/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_settingsdialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10490,14 +10544,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx +[ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10510,30 +10563,32 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtCore/QModelIndex:1, - from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, - from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10541,36 +10596,35 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qframe.h:45, - from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, - from /usr/include/qt4/QtGui/qabstractitemview.h:45, - from /usr/include/qt4/QtGui/qlistview.h:45, - from /usr/include/qt4/QtGui/QListView:1, - from /build/avogadro-1.2.0/avogadro/src/enginelistview.h:25, - from /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, - from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, - from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp +[ 93%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10578,18 +10632,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, - from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp -[ 93%] Linking CXX shared module ../../../../lib/crystallographyextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10598,15 +10651,16 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, - from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg -[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx +[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10620,23 +10674,27 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qmetatype.h:45, - from /usr/include/qt4/QtGui/qgraphicsview.h:45, - from /usr/include/qt4/QtGui/QGraphicsView:1, - from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, - from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, + from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -10655,41 +10713,42 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp +[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_importdialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx +[ 94%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx +[ 94%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10697,17 +10756,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10715,19 +10772,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10739,14 +10794,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, - from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, - from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx +[ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10758,18 +10817,12 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, - from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, - from /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 93%] Built target crystallographyextension -[ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -10780,24 +10833,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, - from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, - from /build/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, - from /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822, from /usr/include/python2.7/numpy/ndarrayobject.h:12, from /usr/include/python2.7/numpy/arrayobject.h:4, @@ -10805,29 +10840,8 @@ /usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx +[ 94%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10835,31 +10849,15 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtCore/QAbstractItemModel:1, - from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, - from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -10878,31 +10876,38 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qframe.h:45, - from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, - from /usr/include/qt4/QtGui/qabstractitemview.h:45, - from /usr/include/qt4/QtGui/qtreeview.h:45, - from /usr/include/qt4/QtGui/QTreeView:1, - from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, - from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: +[ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx +[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10914,11 +10919,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, - from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10930,13 +10939,13 @@ from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10951,34 +10960,29 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10990,13 +10994,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, - from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11004,20 +11010,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11029,13 +11033,21 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx +[ 96%] Linking CXX shared module ../../../../lib/gamessextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11044,17 +11056,14 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11062,34 +11071,38 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/savedialog.cpp +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qchar.h:45, - from /usr/include/qt4/QtCore/qstring.h:45, - from /usr/include/qt4/QtCore/qdir.h:45, - from /usr/include/qt4/QtGui/qfiledialog.h:45, - from /usr/include/qt4/QtGui/QFileDialog:1, - from /build/avogadro-1.2.0/avogadro/src/savedialog.h:25, - from /build/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 96%] Built target gamessextension +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11104,44 +11117,13 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp -In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, - from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/ui_settingsdialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11153,13 +11135,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11174,13 +11159,13 @@ from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11192,28 +11177,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 97%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11221,20 +11192,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11246,13 +11217,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11260,17 +11232,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp +[ 96%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11278,16 +11251,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, @@ -11302,10 +11277,52 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 97%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx +In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, + from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp -[ 98%] Linking CXX shared module ../../../../lib/inputfileextension.so -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 +[ 97%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -11319,9 +11336,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11329,28 +11343,42 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, - from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx +[ 97%] Linking CXX shared module ../../../../lib/orcaextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 98%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx +[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/main.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, + from /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/main.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -11361,8 +11389,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 98%] Built target orcaextension [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp +[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -11376,8 +11408,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -11406,8 +11436,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 98%] Built target inputfileextension [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11423,25 +11451,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': -/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - class_ >("GLWidget") - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:15, - from /usr/include/boost/function/function0.hpp:11, - from /usr/include/boost/python/errors.hpp:13, - from /usr/include/boost/python/handle.hpp:11, - from /usr/include/boost/python/args_fwd.hpp:10, - from /usr/include/boost/python/args.hpp:10, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11484,25 +11493,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': -/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - std::auto_ptr >("Molecule", no_init) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/function/function_base.hpp:16, - from /usr/include/boost/function/detail/prologue.hpp:17, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:15, - from /usr/include/boost/function/function0.hpp:11, - from /usr/include/boost/python/errors.hpp:13, - from /usr/include/boost/python/handle.hpp:11, - from /usr/include/boost/python/args_fwd.hpp:10, - from /usr/include/boost/python/args.hpp:10, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11518,6 +11508,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 99%] Linking CXX shared module ../../../../lib/crystallographyextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg +[ 99%] Linking CXX shared module ../../../../lib/inputfileextension.so +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11548,6 +11544,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 99%] Built target inputfileextension [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/plugin.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/plugin.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11578,6 +11576,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 99%] Built target crystallographyextension [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitive.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/primitive.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11623,6 +11623,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': +/build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + class_ >("GLWidget") + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:15, + from /usr/include/boost/function/function0.hpp:11, + from /usr/include/boost/python/errors.hpp:13, + from /usr/include/boost/python/handle.hpp:11, + from /usr/include/boost/python/args_fwd.hpp:10, + from /usr/include/boost/python/args.hpp:10, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qstring.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/qstring.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11635,6 +11654,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': +/build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + std::auto_ptr >("Molecule", no_init) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/function/function_base.hpp:16, + from /usr/include/boost/function/detail/prologue.hpp:17, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:15, + from /usr/include/boost/function/function0.hpp:11, + from /usr/include/boost/python/errors.hpp:13, + from /usr/include/boost/python/handle.hpp:11, + from /usr/include/boost/python/args_fwd.hpp:10, + from /usr/include/boost/python/args.hpp:10, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/residue.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/residue.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, @@ -11697,6 +11735,8 @@ ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/tool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/tool.cpp +[100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o +cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, @@ -11710,11 +11750,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[100%] Linking CXX executable ../../bin/avogadro -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src && /usr/bin/cmake -E 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CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python -[100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o -cd /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/include 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CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/build/avogadro-1.2.0/obj-i686-linux-gnu/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' [100%] Built target avogadro-app [100%] Linking CXX shared module ../../../lib/Avogadro.so @@ -11743,7 +11781,7 @@ dh_prep dh_installdirs dh_auto_install - cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/avogadro-1.2.0/debian/tmp AM_UPDATE_INFO_DIR=no + cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/avogadro-1.2.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-i686-linux-gnu/CMakeFiles /build/avogadro-1.2.0/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -11756,49 +11794,49 @@ make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build +make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' [ 1%] Built target tubegen [ 2%] Built target msym +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build [ 2%] Built target elementcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 3%] Built target navigatetool -[ 4%] Built target bsdyengine +[ 3%] Built target bsdyengine +[ 4%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build'. @@ -11810,10 +11848,10 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= [ 6%] Built target qube make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build @@ -11831,33 +11869,67 @@ make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build @@ -11870,507 +11942,473 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 25%] Built target forceengine -make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 26%] Built target hbondengine -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= -[ 26%] Built target axesengine -make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 27%] Built target ringengine -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= -[ 27%] Built target ribbonengine -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. +make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 27%] Built target stickengine -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend -[ 28%] Built target qtaimengine -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend -[ 29%] Built target wireengine -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 25%] Built target forceengine +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= -[ 29%] Built target cartoonengine -[ 29%] Built target labelengine -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend +[ 25%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= +[ 26%] Built target simplewireengine +make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build -[ 30%] Built target sphereengine -make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 30%] Built target polygonengine +[ 27%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend +[ 28%] Built target dipoleengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 31%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= +[ 29%] Built target sphereengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= +make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend +[ 30%] Built target hbondengine +make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 32%] Built target dipoleengine -make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= -[ 33%] Built target surfaceengine -make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= +[ 31%] Built target ringengine +make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 34%] Built target bondcentrictool -make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend +[ 31%] Built target axesengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. +make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 35%] Built target selectrotatetool -make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend -[ 36%] Built target manipulatetool +[ 31%] Built target ribbonengine make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= +[ 31%] Built target stickengine +make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= +[ 32%] Built target qtaimengine +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= +[ 33%] Built target bondcentrictool +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build -[ 37%] Built target autoopttool -make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend +[ 34%] Built target wireengine +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build -[ 38%] Built target drawtool -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= +[ 34%] Built target labelengine +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend +[ 35%] Built target manipulatetool +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= +[ 36%] Built target selectrotatetool +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend +[ 36%] Built target cartoonengine +make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. +make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build -[ 38%] Built target autorotatetool -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= -[ 39%] Built target gl2psextension -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= -[ 39%] Built target clickmeasuretool -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= -[ 40%] Built target networkfetchextension -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= -[ 40%] Built target aligntool -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 40%] Built target shaderextension -[ 41%] Built target supercellextension -make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build +[ 37%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend +[ 37%] Built target autorotatetool +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 42%] Built target fileimportextension -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build -[ 43%] Built target cartesianextension +[ 37%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build -[ 44%] Built target propextension +[ 38%] Built target networkfetchextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 44%] Built target h2methylextension +[ 38%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 45%] Built target invertchiralextension +[ 39%] Built target autoopttool make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 47%] Built target animationextension -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend -[ 49%] Built target forcefieldextension -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= +[ 40%] Built target drawtool +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= +[ 40%] Built target aligntool +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 40%] Built target shaderextension +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build -[ 49%] Built target hydrogensextension -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend -[ 50%] Built target vrmlextension -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= +[ 41%] Built target supercellextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build -[ 50%] Built target insertpeptideextension +[ 42%] Built target invertchiralextension make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 50%] Built target selectextension +[ 43%] Built target fileimportextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= -[ 52%] Built target insertfragmentextension +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= +[ 44%] Built target cartesianextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build -[ 52%] Built target insertdnaextension -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 53%] Built target molecularpropextension -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 54%] Built target pythonterminal -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build +[ 45%] Built target propextension +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +[ 45%] Built target insertpeptideextension +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= +[ 47%] Built target forcefieldextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build -[ 55%] Built target symmetryextension +make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build +[ 49%] Built target animationextension +[ 50%] Built target vrmlextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 56%] Built target povrayextension -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build -[ 57%] Built target vibrationextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= +[ 50%] Built target hydrogensextension make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 61%] Built target spectraextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build +[ 51%] Built target pythonterminal make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build +[ 51%] Built target selectextension +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 62%] Built target swcntbuilderextension -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend -[ 67%] Built target crystallographyextension -make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= -[ 68%] Built target surfaceextension +make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 53%] Built target insertfragmentextension +[ 54%] Built target molecularpropextension +make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= -[ 70%] Built target orbitalextension +[ 54%] Built target insertdnaextension +make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend +[ 55%] Built target symmetryextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= -make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 71%] Built target qtaimextension -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend +make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build +[ 56%] Built target vibrationextension +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-i686-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= +[ 57%] Built target povrayextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 73%] Built target gamessextension -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build +make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build +[ 58%] Built target surfaceextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 60%] Built target orbitalextension +[ 61%] Built target swcntbuilderextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 73%] Built target smartscolor +[ 62%] Built target qtaimextension +[ 66%] Built target spectraextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 66%] Built target smartscolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 73%] Built target customcolor +make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= +[ 66%] Built target distancecolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 73%] Built target distancecolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -cd /build/avogadro-1.2.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-i686-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= -[ 73%] Built target atomindexcolor +make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 74%] Built target chargecolor +[ 66%] Built target customcolor +[ 68%] Built target gamessextension +[ 68%] Built target atomindexcolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +[ 73%] Built target crystallographyextension +[ 74%] Built target chargecolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 81%] Built target residuecolor -[ 81%] Built target inputfileextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build +[ 75%] Built target residuecolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' -[ 83%] Built target orcaextension +[ 81%] Built target inputfileextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build +[ 83%] Built target orcaextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/python/CMakeFiles/python-module.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-i686-linux-gnu' @@ -12395,989 +12433,989 @@ -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen3.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindGLEW.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-fluorene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/chromone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/cinnoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzofuran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzaldehyde.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/nitrobenzene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinazoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/citric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/eicosane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/ethane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentadecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/butane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/nonane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/2-methylpropane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/octane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides/urea.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/acetylene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/propyne.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/water.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzofuran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzothiophene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/furan.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/thiophene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/pyridine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-indole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzofuran.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzothiophene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/furan.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-indole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/oct-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-pent-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-4-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides/urea.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/2-methylpropane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentadecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/eicosane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/ethane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/butane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/nonane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/octane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-methionine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-phenylalanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-valine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-valine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-proline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-lysine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-arginine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-asparagine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-phenylalanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C240.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C180.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C76.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C78.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C30.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C24.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C70.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/ethyl_carbamate.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/citric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinazoline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/nitrobenzene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzaldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzofuran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/chromone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-fluorene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/cinnoline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-phenylalanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-valine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-valine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-proline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-asparagine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-arginine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-phenylalanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-lysine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-methionine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/water.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-his.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-thr.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-met.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-val.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ile.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-cys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asn.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-trp.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-his.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-sec.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ile.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-val.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-leu.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/gly.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-trp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-tyr.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-val.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-tyr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asp.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pyl.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-thr.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/gly.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-met.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-cys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asn.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-thr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pro.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-val.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pyl.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asn.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/AlN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/InN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/Si3N4-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/GaN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/BaTiO3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/MgTiO3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GME.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DAC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FRA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOZ.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOD.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TUN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MWW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PUN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ESV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NES.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFG.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAZ.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RSN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SIV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/HEU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAZ.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFX.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RUT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ANA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/HEU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BSV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFX.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EZT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TUN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DAC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CDO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RUT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOD.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GME.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FRA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ESV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DDR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MWW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SIV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/GaN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/AlN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/Si3N4-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/InN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/InSb.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/GaSb.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/MgTiO3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/BaTiO3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-IV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-III.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/GaSb.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/InSb.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/CoFe-Wairauite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/BiPd-Sobolevskite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/FePt-Tetraferroplatinum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/AuCu-Tetraauricupride.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/PtBi.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Os-Osmium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Th-Thorium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Au-Gold.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Dy-Dysprosium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus-black.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Be-Beryllium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Hf-Hafnium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ag-Silver.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ho-Holmium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cs-Cesium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ga-Gallium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Th-Thorium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Dy-Dysprosium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Be-Beryllium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S6-Sulfur.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenolamprite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenic.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus-black.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Re-Rhenium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nb-Niobium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nd-Neodymium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ga-Gallium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenic.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Na-Sodium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Se-Selenium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mo-Molybdenum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Re-Rhenium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Au-Gold.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/V-Vanadium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tm-Thulium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ce-Cerium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Li-Lithium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/He-Helium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Os-Osmium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cu-Copper.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/V-Vanadium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Se-Selenium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenolamprite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/GaP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/BP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/InP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/AlP.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/GaP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/pkgconfig/avogadro.pc -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/bin/avopkg -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/features/avogadro.prf @@ -13703,10 +13741,10 @@ dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. dh_missing: usr/lib/libmsym.a exists in debian/tmp but is not installed to anywhere -dh_missing: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymTargets.cmake exists in debian/tmp but is not installed to anywhere -dh_missing: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymConfig.cmake exists in debian/tmp but is not installed to anywhere +dh_missing: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere +dh_missing: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: avogadro (6), avogadro-data (4), libavogadro-dev (11), libavogadro1 (8), python-avogadro (2) @@ -13743,36 +13781,38 @@ dh_shlibdeps dh_installdeb dh_gencontrol -dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro-dev: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined +dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package avogadro-data: substitution variable ${sip:Depends} unused, but is defined -dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined +dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_i386.deb'. -dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_i386.deb'. -dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-4_i386.deb'. +dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.2.0-4_i386.deb'. +dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_i386.deb'. dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-4_all.deb'. +dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-4_i386.deb'. +dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_i386.deb'. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.2.0-4_i386.deb'. -dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.2.0-4_i386.deb'. +dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_i386.deb'. dpkg-deb: building package 'python-avogadro-dbgsym' in '../python-avogadro-dbgsym_1.2.0-4_i386.deb'. -dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../avogadro_1.2.0-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/2794/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2794/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26043 and its subdirectories -I: Current time: Mon Jun 24 01:01:59 -12 2019 -I: pbuilder-time-stamp: 1561381319 +I: removing directory /srv/workspace/pbuilder/2794 and its subdirectories +I: Current time: Mon Jul 27 09:29:03 +14 2020 +I: pbuilder-time-stamp: 1595791743