Diff of the two buildlogs: -- --- b1/build.log 2020-06-01 11:59:52.535854961 +0000 +++ b2/build.log 2020-06-01 12:06:22.312088837 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 31 23:38:16 -12 2020 -I: pbuilder-time-stamp: 1591011496 +I: Current time: Mon Jul 5 08:22:52 +14 2021 +I: pbuilder-time-stamp: 1625422972 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Aug 8 05:11:47 2013 -12 +gpgv: Signature made Fri Aug 9 07:11:47 2013 +14 gpgv: using DSA key 9B46F1FB088F6B8C gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./apbs_1.4-1.dsc @@ -30,138 +30,172 @@ dpkg-source: info: applying debian_make.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28622/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26562/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26562/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26562/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='e6d4905722994a3580e032402377cf85' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='28622' - PS1='# ' - PS2='> ' + INVOCATION_ID=b38303c316da41af9c4a35dc390fd7e1 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26562 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.iu6xcIrs9m/pbuilderrc_B6ap --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.iu6xcIrs9m/b1 --logfile b1/build.log apbs_1.4-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.iu6xcIrs9m/pbuilderrc_J5z1 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.iu6xcIrs9m/b2 --logfile b2/build.log apbs_1.4-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux profitbricks-build12-i386 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2 (2020-04-29) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) x86_64 GNU/Linux I: ls -l /bin - total 5500 - -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown - -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp - -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash - -rwxr-xr-x 1 root root 120676 Feb 28 2019 date - -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd - -rwxr-xr-x 1 root root 100620 Feb 28 2019 df - -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir - -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 34532 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 30112 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln - -rwxr-xr-x 1 root root 55400 Jul 26 2018 login - -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls - -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 42348 Jan 9 2019 more - -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount - -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm - -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 May 31 20:27 sh -> dash - -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty - -rwsr-xr-x 1 root root 71072 Jan 9 2019 su - -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync - -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar - -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch - -rwxr-xr-x 1 root root 34532 Feb 28 2019 true - -rwxr-xr-x 1 root root 17768 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount - -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/28622/tmp/hooks/D02_print_environment finished + total 5476 + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 5 08:22 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 4 04:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/26562/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -323,7 +357,7 @@ Get: 110 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 111 http://deb.debian.org/debian buster/main i386 python-setuptools all 40.8.0-1 [382 kB] Get: 112 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] -Fetched 76.1 MB in 4min 0s (317 kB/s) +Fetched 76.1 MB in 1s (58.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -801,7 +835,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/apbs-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/apbs-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 1.4-1 dpkg-buildpackage: info: source distribution unstable @@ -934,7 +968,7 @@ make[1]: Leaving directory '/build/apbs-1.4' dh_auto_build -O--parallel dh_auto_build: Compatibility levels before 9 are deprecated (level 7 in use) - cd obj-i686-linux-gnu && make -j10 + cd obj-i686-linux-gnu && make -j18 make[1]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' /usr/bin/cmake -S/build/apbs-1.4 -B/build/apbs-1.4/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/apbs-1.4/obj-i686-linux-gnu/CMakeFiles /build/apbs-1.4/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -950,42 +984,42 @@ make[3]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[3]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' -[ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-1.4/src/generic/nosh.c -[ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o +[ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o +[ 6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o +[ 6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/apbs-1.4/src/generic/valist.c +[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/apbs-1.4/src/generic/mgparm.c -[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -[ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-1.4/src/generic/nosh.c +[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o +[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o +[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-1.4/src/generic/femparm.c cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-1.4/src/generic/pbeparm.c +[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o +[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/apbs-1.4/src/generic/apolparm.c -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-1.4/src/generic/vacc.c -[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/apbs-1.4/src/generic/vatom.c -[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/apbs-1.4/src/generic/valist.c -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-1.4/src/generic/femparm.c -[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/apbs-1.4/src/generic/vpbe.c Scanning dependencies of target apbs_pmgc make[3]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' +[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build -make[3]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' -[ 23%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-1.4/src/pmgc/buildAd.c +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-1.4/src/generic/vacc.c +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/apbs-1.4/src/generic/vatom.c +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/apbs-1.4/src/generic/vcap.c +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/apbs-1.4/src/generic/vclist.c +[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/apbs-1.4/src/generic/vpbe.c [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/apbs-1.4/src/generic/vcap.c -[ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-1.4/src/pmgc/buildBd.c -[ 34%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o +[ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-1.4/src/pmgc/buildAd.c +[ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-1.4/src/pmgc/buildBd.c [ 39%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong 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-D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /build/apbs-1.4/src/pmgc/matvecd.c -[ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /build/apbs-1.4/src/pmgc/mgcsd.c -[ 53%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o +[ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o +[ 53%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /build/apbs-1.4/src/pmgc/mgdrvd.c +cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /build/apbs-1.4/src/pmgc/mgcsd.c [ 55%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /build/apbs-1.4/src/pmgc/mgsubd.c [ 58%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /build/apbs-1.4/src/pmgc/mikpckd.c [ 60%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /build/apbs-1.4/src/pmgc/mlinpckd.c -[ 62%] Linking C static library ../../../lib/libapbs_generic.a -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -P CMakeFiles/apbs_generic.dir/cmake_clean_target.cmake -cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libapbs_generic.a CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -[ 65%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o +[ 62%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /build/apbs-1.4/src/pmgc/mypdec.c -/usr/bin/ranlib ../../../lib/libapbs_generic.a -[ 67%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o -make[3]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' +[ 65%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /build/apbs-1.4/src/pmgc/newtond.c -[ 67%] Built target apbs_generic -[ 69%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o +[ 67%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /build/apbs-1.4/src/pmgc/newdrvd.c -[ 72%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o +[ 69%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /build/apbs-1.4/src/pmgc/powerd.c -[ 74%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o +[ 72%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /build/apbs-1.4/src/pmgc/smoothd.c -[ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o +[ 74%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/apbs-1.4/src/pmgc/mgfasd.c +[ 76%] Linking C static library ../../../lib/libapbs_generic.a +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -P CMakeFiles/apbs_generic.dir/cmake_clean_target.cmake +cd /build/apbs-1.4/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../lib/libapbs_generic.a CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o +/usr/bin/ranlib ../../../lib/libapbs_generic.a +make[3]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' +[ 76%] Built target apbs_generic [ 79%] Linking C static library ../../../lib/libapbs_pmgc.a cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cmake -P CMakeFiles/apbs_pmgc.dir/cmake_clean_target.cmake cd /build/apbs-1.4/obj-i686-linux-gnu/src/pmgc && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=1 @@ -1039,14 +1073,14 @@ make[3]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[3]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' -[ 81%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-1.4/src/mg/vopot.c -[ 83%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-1.4/src/mg/vgrid.c +[ 81%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/apbs-1.4/src/mg/vmgrid.c -[ 88%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o +[ 83%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-1.4/src/mg/vopot.c +[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /build/apbs-1.4/src/mg/vpmg.c +[ 88%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o +cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-1.4/src/mg/vgrid.c [ 90%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/apbs-1.4/src/mg/vpmgp.c [ 93%] Linking C static library ../../../lib/libapbs_mg.a @@ -1063,10 +1097,10 @@ make[3]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[3]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' -[ 95%] Building C object src/CMakeFiles/apbs.dir/main.c.o -cd /build/apbs-1.4/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-1.4/src/main.c -[ 97%] Building C object src/CMakeFiles/apbs.dir/routines.c.o +[ 95%] Building C object src/CMakeFiles/apbs.dir/routines.c.o +[ 97%] Building C object src/CMakeFiles/apbs.dir/main.c.o cd /build/apbs-1.4/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs.dir/routines.c.o -c /build/apbs-1.4/src/routines.c +cd /build/apbs-1.4/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-1.4/src/main.c /build/apbs-1.4/src/main.c: In function 'main': /build/apbs-1.4/src/main.c:277:64: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); @@ -1427,7 +1461,7 @@ Checking forces for input file apbs-forces.in Checking Polar Forces Checking Apolar Forces -Elapsed time: 0.005369 seconds +Elapsed time: 0.001604 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-auto.in @@ -1436,14 +1470,14 @@ *** FAILED *** APBS returned -2.297736000000e+02 Expected result is -2.297735000000e+02 (0.005% error) -Elapsed time: 5.653112 seconds +Elapsed time: 7.967304 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-auto.in Testing computed result -2.290124252387E+02 against expected result -2.290124E+02 *** PASSED *** -Elapsed time: 4.659612 seconds +Elapsed time: 6.470288 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-parallel.in @@ -1464,7 +1498,7 @@ Testing computed result -2.304918486746E+02 against expected result -2.304918E+02 *** PASSED *** -Elapsed time: 20.994113 seconds +Elapsed time: 34.038080 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-parallel.in @@ -1485,9 +1519,9 @@ Testing computed result -2.293871439560E+02 against expected result -2.293871E+02 *** PASSED *** -Elapsed time: 21.540711 seconds +Elapsed time: 31.204570 seconds -------------------------------------------------------------------------------- -Total elapsed time: 52.852917 seconds +Total elapsed time: 79.681846 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for alkanes section @@ -1516,9 +1550,9 @@ *** PASSED *** Testing computed result 1.192358496286E+01 against expected result 1.192358E+01 *** PASSED *** -Elapsed time: 92.840667 seconds +Elapsed time: 15.893152 seconds -------------------------------------------------------------------------------- -Total elapsed time: 92.840667 seconds +Total elapsed time: 15.893152 seconds Test results have been logged -------------------------------------------------------------------------------- Running Vio_ctor2: Gethostbyname fail INET sock <> dueto @@ -1742,7 +1776,7 @@ *** FAILED *** APBS returned 1.656346000000e+01 Expected result is 1.500769000000e+01 (77.7885% error) -Elapsed time: 38.301339 seconds +Elapsed time: 25.360086 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7h-dmso-smol.in @@ -1751,7 +1785,7 @@ *** FAILED *** APBS returned 1.624454000000e+01 Expected result is 1.624455000000e+01 (0.0005% error) -Elapsed time: 38.472302 seconds +Elapsed time: 19.994179 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-mol.in @@ -1760,7 +1794,7 @@ *** FAILED *** APBS returned 1.442500000000e+01 Expected result is 1.442501000000e+01 (0.0005% error) -Elapsed time: 41.165918 seconds +Elapsed time: 63447.458473 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-smol.in @@ -1769,9 +1803,9 @@ *** FAILED *** APBS returned 1.545151000000e+01 Expected result is 1.545150000000e+01 (0.0005% error) -Elapsed time: 37.647466 seconds +Elapsed time: 23000.326259 seconds -------------------------------------------------------------------------------- -Total elapsed time: 155.587025 seconds +Total elapsed time: 93.138997 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for hca-bind section @@ -1782,7 +1816,7 @@ *** FAILED *** APBS returned -5.246476000000e+01 Expected result is -5.246468000000e+01 (0.004% error) -Elapsed time: 44.703035 seconds +Elapsed time: 23.301013 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -1791,9 +1825,9 @@ *** FAILED *** APBS returned -5.405979000000e+01 Expected result is -5.405978000000e+01 (0.0005% error) -Elapsed time: 41.059121 seconds +Elapsed time: 16.783492 seconds -------------------------------------------------------------------------------- -Total elapsed time: 85.762156 seconds +Total elapsed time: 40.084505 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for ionize section @@ -1808,7 +1842,7 @@ *** PASSED *** Testing computed result -4.745272838398E+02 against expected result -4.745273E+02 *** PASSED *** -Elapsed time: 9.284970 seconds +Elapsed time: 14.767703 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -1821,7 +1855,7 @@ *** PASSED *** Testing computed result -2.959668753288E+02 against expected result -2.959669E+02 *** PASSED *** -Testing computed result -4.721246714829E+02 agVio_ctor2: Gethostbyname fail INET sock <> dueto +Testing computed result -4.721246714829EVio_ctor2: Gethostbyname fail INET sock <> dueto Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. @@ -1952,11 +1986,11 @@ Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. -ainst expected result -4.721247E+02 ++02 against expected result -4.721247E+02 *** PASSED *** -Elapsed time: 9.608992 seconds +Elapsed time: 12.582748 seconds -------------------------------------------------------------------------------- -Total elapsed time: 18.893962 seconds +Total elapsed time: 27.350451 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for ion-pmf section @@ -1965,9 +1999,9 @@ Testing computed result -1.125191605614E+03 against expected result -1.125192E+03 *** PASSED *** -Elapsed time: 56.139066 seconds +Elapsed time: 10.633112 seconds -------------------------------------------------------------------------------- -Total elapsed time: 56.139066 seconds +Total elapsed time: 10.633112 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for pka-lig section @@ -1978,7 +2012,7 @@ *** FAILED *** APBS returned 8.083516000000e+00 Expected result is 8.083540000000e+00 (0.0012% error) -Elapsed time: 47.115791 seconds +Elapsed time: 18.852847 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-vdw.in @@ -1987,14 +2021,14 @@ *** FAILED *** APBS returned 2.096300000000e+01 Expected result is 2.096296000000e+01 (0.002% error) -Elapsed time: 43.920892 seconds +Elapsed time: 14.688906 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-surf.in Testing computed result 1.192607686580E+02 against expected result 1.192608E+02 *** PASSED *** -Elapsed time: 46.833053 seconds +Elapsed time: 14.980393 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-surf.in @@ -2003,9 +2037,9 @@ *** FAILED *** APBS returned 1.088773000000e+02 Expected result is 1.088748000000e+02 (0.125% error) -Elapsed time: 47.462214 seconds +Elapsed time: 13.035923 seconds -------------------------------------------------------------------------------- -Total elapsed time: 185.331950 seconds +Total elapsed time: 61.558069 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for point-pmf section @@ -2014,33 +2048,33 @@ Testing computed result 1.830820799027E+01 against expected result 1.830821E+01 *** PASSED *** -Elapsed time: 6.621031 seconds +Elapsed time: 2.903727 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_2.in Testing computed result 8.906694086750E+00 against expected result 8.906694E+00 *** PASSED *** -Elapsed time: 9.843959 seconds +Elapsed time: 2.914714 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_3.in Testing computed result 5.909599816984E+00 against expected result 5.909600E+00 *** PASSED *** -Elapsed time: 5.500882 seconds +Elapsed time: 2.923188 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_4.in Testing computed result 4.430144947418E+00 against expected result 4.430145E+00 *** PASSED *** -Elapsed time: 3.611840 seconds +Elapsed time: 2.929287 seconds -------------------------------------------------------------------------------- -Total elapsed time: 25.577712 seconds +Total elapsed time: 11.670916 seconds Test results have been logged -------------------------------------------------------------------------------- -Running tests for solvVio_ctor2: Gethostbyname fail INET sock <> dueto +Running tests foVio_ctor2: Gethostbyname fail INET sock <> dueto Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. @@ -2054,7 +2088,7 @@ Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. - section +r solv section -------------------------------------------------------------------------------- Testing input file apbs-mol.in @@ -2066,7 +2100,7 @@ Expected result is -3.904121000000e+02 (0.005% error) Testing computed result -3.541635359318E+02 against expected result -3.541635E+02 *** PASSED *** -Elapsed time: 4.815822 seconds +Elapsed time: 4.740416 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -2079,9 +2113,9 @@ Expected result is -3.912388000000e+02 (0.005% error) Testing computed result -3.536629226599E+02 against expected result -3.536629E+02 *** PASSED *** -Elapsed time: 7.146439 seconds +Elapsed time: 4.123413 seconds -------------------------------------------------------------------------------- -Total elapsed time: 11.962261 seconds +Total elapsed time: 8.863829 seconds Test results have been logged -------------------------------------------------------------------------------- make[1]: Leaving directory '/build/apbs-1.4' @@ -2091,7 +2125,7 @@ make[1]: Entering directory '/build/apbs-1.4' dh_auto_install --destdir=/build/apbs-1.4/debian/tmp/ dh_auto_install: Compatibility levels before 9 are deprecated (level 7 in use) - cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/apbs-1.4/debian/tmp AM_UPDATE_INFO_DIR=no + cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/apbs-1.4/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' /usr/bin/cmake -S/build/apbs-1.4 -B/build/apbs-1.4/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/apbs-1.4/obj-i686-linux-gnu/CMakeFiles /build/apbs-1.4/obj-i686-linux-gnu/CMakeFiles/progress.marks @@ -2113,8 +2147,8 @@ make[4]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/pmgc/CMakeFiles/apbs_pmgc.dir/build'. make[4]: Leaving directory '/build/apbs-1.4/obj-i686-linux-gnu' +[ 34%] Built target apbs_generic [ 79%] Built target apbs_pmgc -[ 79%] Built target apbs_generic make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[4]: Entering directory '/build/apbs-1.4/obj-i686-linux-gnu' cd /build/apbs-1.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-1.4 /build/apbs-1.4/src/mg /build/apbs-1.4/obj-i686-linux-gnu /build/apbs-1.4/obj-i686-linux-gnu/src/mg /build/apbs-1.4/obj-i686-linux-gnu/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= @@ -2143,655 +2177,655 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/license --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/license/license.html --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/license/LICENSE.txt --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/index.html +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/CMakeLists.txt -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/programmer --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/programmer/Doxyfile.in -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/programmer/mainpage.h --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/CMakeLists.txt +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/programmer/Doxyfile.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/index.html +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/license +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/license/LICENSE.txt +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/license/license.html -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/doc/README -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/polarforces --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/io.mc --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/README.html --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/apolarforces --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.pdb --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/runme.sh --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/complex.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/ion-pmf/parm.dat --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/fas2.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/achbp.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/apbs-PDB.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/apbs.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/param.dat --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/README --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/mache.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-smol.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-smol.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-mol.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-min.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-min.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/io.mc --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-mol.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-complex.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/README.html --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-smol.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-mol.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-complex.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog 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/build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-smol.out +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-smol.in -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/acet.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/mesh.m -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-mol.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/io.mc +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/complex.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/hca.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/README.html -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD --- Installing: 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Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/point-pmf-0.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_2.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_4.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/mol0.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/runme.sh --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_4.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_2.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/point-pmf/mol1.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/apbs-smol.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/apbs-mol.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.out.orig.exam --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.dat.exam --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.inp.exam --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/Makefile.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/io.mc --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/methoxide.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/Makefile.am --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/README.html --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/apbs-mol.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/methanol.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/apbs-smol.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/README.html --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/ethane.pdb --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/2-methylbutane.pdb --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/Makefile.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/mol.pdb --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/cyclohexane.pdb --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/io.mc --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/methane.pdb --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/README.html --- Installing: 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/build/apbs-1.4/debian/tmp/usr/share/apbs/examples/alkanes/hexane.pdb +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/smpbe +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/smpbe/apbs-smpbe-24dup.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/smpbe/apbs-smpbe-ion.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/smpbe/24dup.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/smpbe/ion.pqr -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/ion.xml --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/polarforces --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-mol-fem.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-mol-fem-extmesh.in -- Installing: 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/build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-mol-auto.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/pmf.dat +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/mesh.m +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/parm.dat +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-mol-parallel-PE1.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-smol-auto.out +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-smol-parallel-PE1.out +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/polarforces -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-smol-parallel-PE2.out --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-smol-parallel.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/born/apbs-apolar.in -- Installing: 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Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.inp.exam +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.out.orig.exam +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.dat.exam +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/methanol.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/methoxide.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/apbs-smol.out +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/solv/apbs-mol.out +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/param.dat +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/apbs.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/mache.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/apbs-PDB.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/achbp.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/fas2.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/misc/README -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/actin-dimer-para.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/actin-mol2.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/born.xml +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/actin-mol1.pqr -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/actin-dimer.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/actin-complex.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/examples/opal/actin-mol2.pqr -- 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--- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid/absolute_error.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid/complex-pot.dx_and_target_grid__MATLAB_pot.dx.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/complex.inm --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/bx6_7_apo_apbs.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/bx6_7_lig_apbs.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/outputfiles +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/outputfiles/coarse_grid_MATLAB_pot.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/outputfiles/coarse_grid_MATLAB_pot.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/COMPARATIVE_ANALYSIS_coarse_grid +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error_coarse_grid_pka.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-pka-pot.dx_and_coarse_grid_MATLAB_pot.dx.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/coarse_kpa_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-pka-pot.dx_and_coarse_grid_MATLAB_pot.dx.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/kinase/focusname.inm -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/outputfiles +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/outputfiles/coarse_grid_MATLAB_pot.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/outputfiles/coarse_grid_MATLAB_pot.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error_coarse_grid_ligand.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-ligand-pot.dx_and_coarse_grid_MATLAB_pot.dx.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-ligand-pot.dx_and_coarse_grid_MATLAB_pot.dx.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/outputfiles --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/outputfiles/target_grid_MATLAB_pot.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/outputfiles/target_grid_MATLAB_pot.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/outputfiles/target_grid_MATLAB_pot.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/outputfiles/MATLAB_screen.io -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid/ligand-pot.dx_and_target_grid__MATLAB_pot.dx.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid/absolute_error_target_ligand.jpg -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid/absolute_error_target_ligand.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid/ligand-pot.dx_and_target_grid__MATLAB_pot.dx.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/target_ligand_model/COMPARATIVE_ANALYSIS_target_grid/ligand-pot.dx_and_target_grid__MATLAB_pot.dx.jpg -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/focusname.inm --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/outputfiles --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/outputfiles/coarse_grid_MATLAB_pot.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/outputfiles/coarse_grid_MATLAB_pot.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-ligand-pot.dx_and_coarse_grid_MATLAB_pot.dx.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error_coarse_grid_ligand.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/coarse_ligand_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-ligand-pot.dx_and_coarse_grid_MATLAB_pot.dx.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/ligand/ligand.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/bx6_7_apo_apbs.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/bx6_7_lig_apbs.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/complex.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/outputfiles +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/outputfiles/target_grid_MATLAB_pot.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/outputfiles/target_grid_MATLAB_pot.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/outputfiles/MATLAB_screen.io +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid/complex-pot.dx_and_target_grid__MATLAB_pot.dx.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid/complex-pot.dx_and_target_grid__MATLAB_pot.dx.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid/absolute_error_target_grid_complex.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/target-complex_model/COMPARATIVE_ANALYSIS_target_grid/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/focusname.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/outputfiles +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/outputfiles/coarse_grid_MATLAB_pot.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/outputfiles/coarse_grid_MATLAB_pot.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/COMPARATIVE_ANALYSIS_coarse_grid +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/COMPARATIVE_ANALYSIS_coarse_grid/absolute_error_coarse_grid_complex.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-complex-pot.dx_and_coarse_grid_MATLAB_pot.dx.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/complex/coarse-complex_model/COMPARATIVE_ANALYSIS_coarse_grid/coarse-complex-pot.dx_and_coarse_grid_MATLAB_pot.dx.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/pka/bx6_7_bin_apbs.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/ref-methoxine.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/methanol.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/solvated-methanol.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/methoxide.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/solvated-methoxine.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/meth.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/Meth/ref-methanol.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/born-ion +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/born-ion/ref-born.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/born-ion/solvated-born.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/born-ion/born.in +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/born-ion/born-ion.pqr -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/ENERGY_TABLE.txt --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1mole2.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1.inm --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1_model --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1_model/outputfiles --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1_model/outputfiles/target_grid_MATLAB_pot.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1_model/outputfiles/target_grid_MATLAB_pot.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1_model/outputfiles/MATLAB_screen.io --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1/absolute_error.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1/absolute_error.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1/mole1-pot.dx_and_target_grid__MATLAB_pot.dx.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1/mole1-pot.dx_and_target_grid__MATLAB_pot.dx.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2.inm --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1mole2_model --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1mole2_model/outputfiles --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1mole2_model/outputfiles/target_grid_MATLAB_pot.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1mole2_model/outputfiles/target_grid_MATLAB_pot.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1mole2_model/outputfiles/MATLAB_screen.io --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1mole2 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1mole2/absolute_error.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1mole2/mole1mole2-pot.dx_and_target_grid__MATLAB_pot.dx.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1mole2/absolute_error.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1mole2/mole1mole2-pot.dx_and_target_grid__MATLAB_pot.dx.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole2 --- Installing: 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/build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2_model/outputfiles --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2_model/outputfiles/target_grid_MATLAB_pot.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2_model/outputfiles/target_grid_MATLAB_pot.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2_model/outputfiles/MATLAB_screen.io -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2.pqr --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1.inm -- Installing: 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Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2_model -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2_model/outputfiles --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2_model/outputfiles/target_grid_MATLAB_pot.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2_model/outputfiles/target_grid_MATLAB_pot.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2_model/outputfiles/target_grid_MATLAB_pot.fig -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2_model/outputfiles/MATLAB_screen.io +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1.pqr -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1mole2 -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1mole2/absolute_error.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1mole2/mole1mole2-pot.dx_and_target_grid__MATLAB_pot.dx.jpg -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1mole2/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1mole2/mole1mole2-pot.dx_and_target_grid__MATLAB_pot.dx.jpg -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1mole2/mole1mole2-pot.dx_and_target_grid__MATLAB_pot.dx.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole2 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole2/absolute_error.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole2/absolute_error.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole2/mole2-pot.dx_and_target_grid__MATLAB_pot.dx.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole2/mole2-pot.dx_and_target_grid__MATLAB_pot.dx.jpg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2.inm -- Installing: 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Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1/absolute_error.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1/absolute_error.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1/mole1-pot.dx_and_target_grid__MATLAB_pot.dx.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/COMPARATIVE_ANALYSIS_mole1/mole1-pot.dx_and_target_grid__MATLAB_pot.dx.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole2.pqr +-- Installing: 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Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1/mole1-pot.dx_and_target_grid__MATLAB_pot.dx.jpg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1/mole1-pot.dx_and_target_grid__MATLAB_pot.dx.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole1.inm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/mole2.pqr +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole2 +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole2/mole2-pot.dx_and_target_grid__MATLAB_pot.dx.fig +-- Installing: 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Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/DNA/solvated-DNA.inm -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/DNA/ref-DNA.inm -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/Examples/DNA/DNA.in --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/discretization.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/BoundaryCondition.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/read_inm.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/BuildA.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/dx_export.m --- Installing: 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/build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/data_parse.m -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/BuildA.m +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.m +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/discretization.m +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MAPBS.m -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/centerofgrid.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.fig --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_PB_SOLVER_AND_GUI.pdf --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.m -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/dx_export.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/data_parse.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/energy.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/mapbs_comparison.m +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/fbc.m -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/parameters.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MAPBS.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.fig +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.m -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/README --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0 --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/BoundaryCondition.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/read_inm.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/BuildA.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/dx_export.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/data_parse.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/main.m --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/matlab/solver/born-ion-model-example.pdf --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Debug build properties.props --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Release build properties.props --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Generic build properties.props --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/README.txt --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/command-line support --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/command-line support/apbs-cli.bat --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/configuration headers --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/configuration headers/apbscfg.h --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/configuration headers/maloccf.h --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/NSI configuration --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/NSI configuration/apbs.nsi +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/README.html +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip/inputgen.py +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip/psize.py +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip/born.c +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip/psize.pyc +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip/coulomb.c +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/manip/inputgen.pyc -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cfg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.net +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.cfg -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.net -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.net --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.cfg --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.cfg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.net -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cfg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.cfg -- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.net --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.net --- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cm +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cfg +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/configuration headers +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/configuration headers/maloccf.h +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/configuration headers/apbscfg.h +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/README.txt +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/command-line support +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/command-line support/apbs-cli.bat +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/NSI configuration +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/NSI configuration/apbs.nsi +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Generic build properties.props +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Debug build properties.props +-- Installing: /build/apbs-1.4/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Release build properties.props -- Installing: /build/apbs-1.4/debian/tmp/usr/include/apbs/apbs.h -- Installing: /build/apbs-1.4/debian/tmp/usr/include/apbs/routines.h -- Installing: /build/apbs-1.4/debian/tmp/usr/bin/apbs @@ -2847,595 +2881,595 @@ dh_install: This feature will be removed in compat 12. dh_missing: Compatibility levels before 9 are deprecated (level 7 in use) dh_missing: usr/lib/libapbs_pmgc.a exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/lib/libapbs_generic.a exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere dh_missing: usr/lib/libapbs_mg.a exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tests/apbs_logger.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tests/apbs_tester.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tests/apbs_check_results.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tests/README exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tests/apbs_check_forces.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/lib/libapbs_generic.a exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/apbs.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/routines.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/mg/vpmg.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/mg/vpmgp.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/mg/vmgrid.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/mg/vopot.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/mg/vgrid.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/cgd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/smoothd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/buildPd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mgcsd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mgfasd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/buildBd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mgsubd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mlinpckd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mypdec.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/buildGd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/gsd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/buildAd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/newtond.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mgdrvd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/newdrvd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/mikpckd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/matvecd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/pmgc/powerd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/femparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/apolparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vhal.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vacc.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/valist.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/nosh.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vatom.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vgreen.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/mgparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vclist.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/pbeparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vparam.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vmatrix.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vstring.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vcap.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/include/apbs/generic/vpbe.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/CMakeLists.txt exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/index.html exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/README exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/programmer/mainpage.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/programmer/Doxyfile.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/license/LICENSE.txt exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/doc/license/license.html exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/README.html exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/apbs-smol.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/acet.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/mesh.m exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/apbs-mol.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/io.mc exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/complex.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/hca.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/README.html exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/apbs-smol.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/apbs-mol.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf2.err exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf2.qcd exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf.inp exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.inp exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.err exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf1.qcd exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/srsrf.dot exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf.log exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/smpbe/apbs-smpbe-24dup.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/smpbe/apbs-smpbe-ion.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/smpbe/24dup.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/smpbe/ion.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-parallel-PE0.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-parallel-PE0.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-fem.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-parallel-PE3.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-mol-parallel-PE2.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/mesh.m exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/parm.dat exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-mol-parallel-PE1.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-auto.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-parallel-PE1.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/polarforces exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-parallel-PE2.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-apolar.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/examples/born/apbs-smol-auto.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: 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in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole1mole2/mole1mole2-pot.dx_and_target_grid__MATLAB_pot.dx.fig exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole2/absolute_error.jpg exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole2/absolute_error.fig exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-2.75/COMPARATIVE_ANALYSIS_mole2/mole2-pot.dx_and_target_grid__MATLAB_pot.dx.fig exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: 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exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole2.inm exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1mole2.inm exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/molex.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1_model/outputfiles/target_grid_MATLAB_pot.fig exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole1_model/outputfiles/target_grid_MATLAB_pot.jpg exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: 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exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole2_model/outputfiles/target_grid_MATLAB_pot.jpg exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole2_model/outputfiles/target_grid_MATLAB_pot.fig exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere dh_missing: usr/share/apbs/tools/matlab/solver/Examples/point-pmf/-0.25/mole2_model/outputfiles/MATLAB_screen.io exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/Two_ions_complex/TwoIons.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/tools/matlab/solver/Examples/Two_ions_complex/ref-two-ions.inm exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: 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is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/apbs-mol.out exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/proton.xml exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/apbs-smol.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/acetic-acid.pqr exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/UHBD/elec.dat.exam exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/UHBD/elec.inp.exam exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/UHBD/elec.out.orig.exam exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/examples/ionize/UHBD/elec.pdb.exam exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/index.html exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/CMakeLists.txt exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/README exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/license/license.html exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/license/LICENSE.txt exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/programmer/Doxyfile.in exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/share/apbs/doc/programmer/mainpage.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/apbs.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/routines.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vstring.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vatom.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vgreen.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/apolparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vpbe.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vmatrix.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vparam.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/femparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/nosh.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vacc.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vcap.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/pbeparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/mgparm.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vclist.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/vhal.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/generic/valist.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mgfasd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mgsubd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/smoothd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/powerd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mgdrvd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mgcsd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/buildPd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/newdrvd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/buildGd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/cgd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/buildAd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/gsd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mikpckd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/matvecd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/newtond.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/buildBd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mlinpckd.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/pmgc/mypdec.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/mg/vgrid.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/mg/vopot.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/mg/vpmg.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/mg/vmgrid.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere -dh_missing: usr/include/apbs/mg/vpmgp.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/visualization/opendx/potacc.cfg exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/README.txt exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/configuration headers/maloccf.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/configuration headers/apbscfg.h exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/command-line support/apbs-cli.bat exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/NSI configuration/apbs.nsi exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/visual studio property pages/Generic build properties.props exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/visual studio property pages/Debug build properties.props exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tools/windows/visual studio property pages/Release build properties.props exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tests/apbs_check_forces.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tests/apbs_tester.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tests/apbs_check_results.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tests/apbs_logger.py exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere +dh_missing: usr/share/apbs/tests/README exists in /build/apbs-1.4/debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: apbs (1) If the missing files are installed by another tool, please file a bug against it. @@ -3481,12 +3515,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/26562/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26562/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28622 and its subdirectories -I: Current time: Sun May 31 23:59:51 -12 2020 -I: pbuilder-time-stamp: 1591012791 +I: removing directory /srv/workspace/pbuilder/26562 and its subdirectories +I: Current time: Mon Jul 5 08:29:21 +14 2021 +I: pbuilder-time-stamp: 1625423361