Diff of the two buildlogs: -- --- b1/build.log 2020-06-18 17:59:27.945675506 +0000 +++ b2/build.log 2020-06-18 18:29:40.701941414 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 18 05:49:04 -12 2020 -I: pbuilder-time-stamp: 1592502544 +I: Current time: Fri Jun 19 07:59:55 +14 2020 +I: pbuilder-time-stamp: 1592503195 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Oct 4 01:04:53 2018 -12 +gpgv: Signature made Fri Oct 5 03:04:53 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -40,136 +40,170 @@ dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5690/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5619/tmp/hooks/D01_modify_environment starting +debug: Running on opi2a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5619/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5619/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='8502482d2895439980e0949c30115813' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5690' - PS1='# ' - PS2='> ' + INVOCATION_ID=19e2538b993e43e9aa5db85a5cd33868 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5619 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6aEd6297kV/pbuilderrc_ghpM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6aEd6297kV/b1 --logfile b1/build.log wise_2.4.1-21.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6aEd6297kV/pbuilderrc_ItXa --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6aEd6297kV/b2 --logfile b2/build.log wise_2.4.1-21.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux odxu4a 5.5.0-0.bpo.2-armmp-lpae #1 SMP Debian 5.5.17-1~bpo10+1 (2020-04-23) armv7l GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 17 20:25 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/5690/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 19 08:00 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 18 22:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/5619/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -381,7 +415,7 @@ Get: 164 http://deb.debian.org/debian buster/main armhf libunicode-linebreak-perl armhf 0.0.20190101-1 [99.3 kB] Get: 165 http://deb.debian.org/debian buster/main armhf texlive-latex-base all 2018.20190227-2 [984 kB] Get: 166 http://deb.debian.org/debian buster/main armhf texlive-extra-utils all 2018.20190227-2 [39.4 MB] -Fetched 132 MB in 12s (10.8 MB/s) +Fetched 132 MB in 19s (6884 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -1093,7 +1127,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/wise-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/wise-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package wise dpkg-buildpackage: info: source version 2.4.1-21 dpkg-buildpackage: info: source distribution unstable @@ -1103,16 +1137,16 @@ fakeroot debian/rules clean dh clean debian/rules override_dh_clean -make[1]: Entering directory '/build/wise-2.4.1' +make[1]: ingresso nella directory "/build/wise-2.4.1" /usr/bin/make -C src clean -make[2]: Entering directory '/build/wise-2.4.1/src' +make[2]: ingresso nella directory "/build/wise-2.4.1/src" cd external ; /usr/bin/make clean -make[3]: Entering directory '/build/wise-2.4.1/src/external' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/external" (cd mott; make clean) -make[4]: Entering directory '/build/wise-2.4.1/src/external/mott' +make[4]: ingresso nella directory "/build/wise-2.4.1/src/external/mott" rm -f *.[oa] -make[4]: Leaving directory '/build/wise-2.4.1/src/external/mott' -make[3]: Leaving directory '/build/wise-2.4.1/src/external' +make[4]: uscita dalla directory "/build/wise-2.4.1/src/external/mott" +make[3]: uscita dalla directory "/build/wise-2.4.1/src/external" if test -d dynlibsrc; then cd dynlibsrc ; rm -f *.[oa]; fi if test -d models; then cd models ; rm -f *.[oa]; fi if test -d base; then cd base ; rm -f *.[oa]; fi @@ -1125,11 +1159,11 @@ if test -x perl/Wise2/Makefile; then cd perl/Wise2/ ; /usr/bin/make clean; fi if test -d oldbin; then rm -rf oldbin; fi if test -d bin; then echo 'moving binaries to oldbin'; mv -f bin oldbin; fi -make[2]: Leaving directory '/build/wise-2.4.1/src' +make[2]: uscita dalla directory "/build/wise-2.4.1/src" /usr/bin/make -C debian/manpages.d clean -make[2]: Entering directory '/build/wise-2.4.1/debian/manpages.d' +make[2]: ingresso nella directory "/build/wise-2.4.1/debian/manpages.d" rm -f dba.1 dnal.1 estwise.1 estwisedb.1 genewise.1 genewisedb.1 genomewise.1 promoterwise.1 psw.1 pswdb.1 scanwise.1 scanwise_server.1 -make[2]: Leaving directory '/build/wise-2.4.1/debian/manpages.d' +make[2]: uscita dalla directory "/build/wise-2.4.1/debian/manpages.d" rm -f -r src/oldbin for i in dba psw dnal genomewise pswdb scanwise estwise genewise sywise genewisedb promoterwise pseudowise estwisedb; do rm -f src/models/$i; done rm -f src/network/scanwise_server @@ -1169,17 +1203,17 @@ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) -make[1]: Leaving directory '/build/wise-2.4.1' +make[1]: uscita dalla directory "/build/wise-2.4.1" debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build -make[1]: Entering directory '/build/wise-2.4.1' +make[1]: ingresso nella directory "/build/wise-2.4.1" /usr/bin/make -C src all -make[2]: Entering directory '/build/wise-2.4.1/src' +make[2]: ingresso nella directory "/build/wise-2.4.1/src" (cd base ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" libwisebase.a ) -make[3]: Entering directory '/build/wise-2.4.1/src/base' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/base" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include wiseconfig.c cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include wisestring.c cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include wiseerror.c @@ -1197,12 +1231,12 @@ cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include linesubs.c ar ru libwisebase.a wiseconfig.o wisestring.o wiseerror.o wisememman.o wisefile.o wiserandom.o wisetime.o wiseoverlay.o wisestreaminterface.o commandline.o linesubs.o ar: `u' modifier ignored since `D' is the default (see `U') -ar: creating libwisebase.a +ar: creazione di libwisebase.a if test -x /bin/ranlib; then /bin/ranlib libwisebase.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libwisebase.a; else exit 0; fi -make[3]: Leaving directory '/build/wise-2.4.1/src/base' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/base" (cd HMMer2 ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" libhmmer.a ) -make[3]: Entering directory '/build/wise-2.4.1/src/HMMer2' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/HMMer2" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -c alphabet.c cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -c core_algorithms.c cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -c debug.c @@ -1286,9 +1320,9 @@ if test -x /usr/bin/ranlib; then /usr/bin/ranlib libhmmer.a; else exit 0; fi if test -x ranlib; then ranlib libhmmer.a; else exit 0; fi chmod 644 libhmmer.a -make[3]: Leaving directory '/build/wise-2.4.1/src/HMMer2' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/HMMer2" (cd dynlibsrc ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" libdyna.a ) -make[3]: Entering directory '/build/wise-2.4.1/src/dynlibsrc' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/dynlibsrc" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ packaln.c packaln.dy: In function ‘Wise2_read_simple_PackAln’: packaln.dy:88:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] @@ -1361,12 +1395,12 @@ cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ dynlibcross.c ar ru libdyna.a packaln.o aln.o dnamatrix.o probability.o alnrange.o alnconvert.o basematrix.o shattermatrix.o matrixdebug.o dpenvelope.o dbsearchimpl.o dprunimpl.o complexsequence.o complexevalset.o complexconsensi.o sequence.o sequencestream.o seqalign.o hitlist.o hsp.o hspstream.o codon.o compmat.o codonmatrix.o codonmapper.o sequencedb.o hscore.o seqlookup.o arrayseqlookup.o genericindexresult.o linkedlist_lookpos.o singlenumberspace.o histogram.o searchstatinterface.o searchstatlookup.o proteindb.o protein.o pairbase.o pairbaseseq.o genomicdb.o randommodel.o randomdb.o genomic.o cdna.o cdnadb.o dna.o embl.o genomicregion.o gene.o transcript.o translation.o btcanvas.o asciibtcanvas.o dynlibcross.o ar: `u' modifier ignored since `D' is the default (see `U') -ar: creating libdyna.a +ar: creazione di libdyna.a if test -x /bin/ranlib; then /bin/ranlib libdyna.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libdyna.a; else exit 0; fi -make[3]: Leaving directory '/build/wise-2.4.1/src/dynlibsrc' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/dynlibsrc" (cd dynlibsrc ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" libdyna_glib.a ) -make[3]: Entering directory '/build/wise-2.4.1/src/dynlibsrc' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/dynlibsrc" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ subseqhash.c cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ intallocator.c intallocator.dy: In function ‘Wise2_show_allocator_status_IntAllocator’: @@ -1434,14 +1468,14 @@ cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ staticseq.c ar ru libdyna_glib.a subseqhash.o intallocator.o proteinstreamedindex.o shadowseq.o shadowseqindex.o hsphandler.o hspscaninterface.o hsp2hitscan.o hsplookupscan.o hsplookupthreaded.o hspthreadeddb.o hspscanruntime.o hsptwohitscan.o proteinindexcons.o dnaindexcons.o staticseq.o ar: `u' modifier ignored since `D' is the default (see `U') -ar: creating libdyna_glib.a +ar: creazione di libdyna_glib.a if test -x /bin/ranlib; then /bin/ranlib libdyna_glib.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libdyna_glib.a; else exit 0; fi -make[3]: Leaving directory '/build/wise-2.4.1/src/dynlibsrc' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/dynlibsrc" (cd external ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" all ) -make[3]: Entering directory '/build/wise-2.4.1/src/external' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/external" (cd mott; make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include" all) -make[4]: Entering directory '/build/wise-2.4.1/src/external/mott' +make[4]: ingresso nella directory "/build/wise-2.4.1/src/external/mott" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mott_api.o mott_api.c mott_api.c: In function ‘InitPvaluesMott’: mott_api.c:64:3: warning: implicit declaration of function ‘free’ [-Wimplicit-function-declaration] @@ -1488,13 +1522,13 @@ cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../dynlibsrc -I../../base wise2_mott_bridge.c ar ru libmott.a mott_api.o gaplib.o wise2_mott_bridge.o ar: `u' modifier ignored since `D' is the default (see `U') -ar: creating libmott.a +ar: creazione di libmott.a if test -x /bin/ranlib; then /bin/ranlib libmott.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libmott.a; else exit 0; fi -make[4]: Leaving directory '/build/wise-2.4.1/src/external/mott' -make[3]: Leaving directory '/build/wise-2.4.1/src/external' +make[4]: uscita dalla directory "/build/wise-2.4.1/src/external/mott" +make[3]: uscita dalla directory "/build/wise-2.4.1/src/external" (cd socket ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" libwisesocket.a ) -make[3]: Entering directory '/build/wise-2.4.1/src/socket' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/socket" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ functionserver.c functionserver.dy: In function ‘Wise2_main_loop_forking_FunctionServer’: functionserver.dy:129:4: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] @@ -1520,12 +1554,12 @@ cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ directsocketwrite.c ar ru libwisesocket.a functionserver.o functionclient.o anonobj.o transferinterface.o directsocketwrite.o ar: `u' modifier ignored since `D' is the default (see `U') -ar: creating libwisesocket.a +ar: creazione di libwisesocket.a if test -x /bin/ranlib; then /bin/ranlib libwisesocket.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libwisesocket.a; else exit 0; fi -make[3]: Leaving directory '/build/wise-2.4.1/src/socket' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/socket" (cd dnaindex ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" all ) -make[3]: Entering directory '/build/wise-2.4.1/src/dnaindex' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/dnaindex" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ -I../dynlibsrc/ -I../models kmer_assembly.c kmer_assembly.dy: In function ‘Wise2_show_KmerAssemblyNode’: kmer_assembly.dy:296:15: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘kmer_t’ {aka ‘long long int’} [-Wformat=] @@ -1625,9 +1659,9 @@ compressed_protein_index.dy:223:10: warning: returning ‘void *’ from a function with return type ‘boolean’ {aka ‘int’} makes integer from pointer without a cast [-Wint-conversion] return NULL; ^~~~ -make[3]: Leaving directory '/build/wise-2.4.1/src/dnaindex' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/dnaindex" (cd network ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" all ) -make[3]: Entering directory '/build/wise-2.4.1/src/network' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/network" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ -I../socket -I../dynlibsrc -I../dnaindex wise_proteinindex_server.c wise_proteinindex_server.c: In function ‘show_version’: wise_proteinindex_server.c:28:103: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -1636,9 +1670,9 @@ cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ -I../socket -I../dynlibsrc -I../dnaindex net_hspscan.c cc -g -o scanwise_server wise_proteinindex_server.o net_hspscan.o ../dnaindex/compressed_protein_index.o ../dnaindex/kmer_index_interface.o ../dnaindex/singleseqspace.o ../dnaindex/kmer_direct.o -ldyna_glib -ldyna -lwisesocket -lwisebase -Wl,-z,relro -Wl,-z,now -g -L../base/ -L../socket -L../dynlibsrc -L../dnaindex -lm `pkg-config --libs glib-2.0` -lpthread cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ -I../socket -I../dynlibsrc -I../dnaindex client_multihspscan.c -make[3]: Leaving directory '/build/wise-2.4.1/src/network' +make[3]: uscita dalla directory "/build/wise-2.4.1/src/network" (cd models ; /usr/bin/make CC="cc" CFLAGS="-g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c `pkg-config --cflags glib-2.0`" EXTRALIBS="-lm" HMMER_DEFINE="HMMER_INTERNAL" HMMER_INCLUDE="../HMMer2/" HMMER_LIBS="../HMMer2/" all ) -make[3]: Entering directory '/build/wise-2.4.1/src/models' +make[3]: ingresso nella directory "/build/wise-2.4.1/src/models" cc -g -O2 -ffile-prefix-map=/build/wise-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../base/ -I../dynlibsrc/ dnal.c dnal.c: In function ‘show_version’: dnal.c:106:103: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -1825,10 +1859,10 @@ cc -o scanwise scanwisep_wiseserver.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o hsp2aln_sw.o ../network/net_hspscan.o ../network/client_multihspscan.o -Wl,-z,relro -Wl,-z,now -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -L../external/mott -L../socket -lmott -ldyna_glib -ldyna -lwisesocket -lwisebase -lm -lpthread -Wl,-z,relro -Wl,-z,now -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` ar ru libmodel.a geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o ar: `u' modifier ignored since `D' is the default (see `U') -ar: creating libmodel.a -make[3]: Leaving directory '/build/wise-2.4.1/src/models' +ar: creazione di libmodel.a +make[3]: uscita dalla directory "/build/wise-2.4.1/src/models" /usr/bin/make bin -make[3]: Entering directory '/build/wise-2.4.1/src' +make[3]: ingresso nella directory "/build/wise-2.4.1/src" mkdir bin cp models/pswdb models/psw models/genewisedb models/estwisedb models/estwise models/genewise models/dba models/dnal models/promoterwise network/scanwise_server models/scanwise ./bin ./welcome.csh @@ -1848,10 +1882,10 @@ to build perl, type make perl and follow the instructions to test the package, type make test -make[3]: Leaving directory '/build/wise-2.4.1/src' -make[2]: Leaving directory '/build/wise-2.4.1/src' +make[3]: uscita dalla directory "/build/wise-2.4.1/src" +make[2]: uscita dalla directory "/build/wise-2.4.1/src" /usr/bin/make -C debian/manpages.d -make[2]: Entering directory '/build/wise-2.4.1/debian/manpages.d' +make[2]: ingresso nella directory "/build/wise-2.4.1/debian/manpages.d" docbook-to-man dba.sgml > dba.1 docbook-to-man dnal.sgml > dnal.1 docbook-to-man estwise.sgml > estwise.1 @@ -1864,7 +1898,7 @@ docbook-to-man pswdb.sgml > pswdb.1 docbook-to-man scanwise.sgml > scanwise.1 docbook-to-man scanwise_server.sgml > scanwise_server.1 -make[2]: Leaving directory '/build/wise-2.4.1/debian/manpages.d' +make[2]: uscita dalla directory "/build/wise-2.4.1/debian/manpages.d" find src/models/ src/dynlibsrc/ -name '*.tex' -print0 | LC_ALL=C sort -z | xargs -0 cat | perl docs/gettex.pl > docs/temp.tex cat docs/wise2api.tex docs/temp.tex docs/apiend.tex > docs/api.tex sed -i 's/ sw_wrap / sw\\_wrap /' docs/api.tex @@ -5211,16 +5245,16 @@ mv docs/dynamite.html docs/dynamite mv docs/wise2.html docs/wise2 dh_auto_build -make[1]: Leaving directory '/build/wise-2.4.1' +make[1]: uscita dalla directory "/build/wise-2.4.1" rm -f debian/wise-data.debhelper.log debian/wise-doc.debhelper.log debian/wise.debhelper.log debian/rules override_dh_auto_test -make[1]: Entering directory '/build/wise-2.4.1' +make[1]: ingresso nella directory "/build/wise-2.4.1" echo "Since a patch was used to adapt the binaries to the Debian locations of data files the test suite will not run in the build directory any more." Since a patch was used to adapt the binaries to the Debian locations of data files the test suite will not run in the build directory any more. echo "A autopkgtest was added as compensation." A autopkgtest was added as compensation. # make -C src test -make[1]: Leaving directory '/build/wise-2.4.1' +make[1]: uscita dalla directory "/build/wise-2.4.1" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary @@ -5257,9 +5291,9 @@ chmod -R u\+rw,go=rX debian/wise-doc/usr/share/doc install -p -m0644 debian/copyright debian/wise-doc/usr/share/doc/wise-doc/copyright install -d debian/wise-doc/usr/share/doc-base/ + install -p -m0644 debian/wise-doc.doc-base.dynamite debian/wise-doc/usr/share/doc-base/wise-dynamite install -p -m0644 debian/wise-doc.doc-base.api debian/wise-doc/usr/share/doc-base/wise-api install -p -m0644 debian/wise-doc.doc-base.wise debian/wise-doc/usr/share/doc-base/wise - install -p -m0644 debian/wise-doc.doc-base.dynamite debian/wise-doc/usr/share/doc-base/wise-dynamite install -d debian/wise-data/usr/share/doc/wise-data install -p -m0644 debian/copyright debian/wise-data/usr/share/doc/wise-data/copyright dh_installchangelogs @@ -5267,7 +5301,7 @@ install -p -m0644 debian/changelog debian/wise/usr/share/doc/wise/changelog.Debian install -p -m0644 debian/changelog debian/wise-doc/usr/share/doc/wise-doc/changelog.Debian debian/rules override_dh_installexamples-indep -make[1]: Entering directory '/build/wise-2.4.1' +make[1]: ingresso nella directory "/build/wise-2.4.1" dh_installexamples install -d debian/wise-data/usr/share/doc/wise-data/examples cp --reflink=auto -a ./src/test/basic_cdna.out debian/wise-data/usr/share/doc/wise-data/examples @@ -5301,7 +5335,7 @@ cp --reflink=auto -a ./src/test/wrong.out debian/wise-data/usr/share/doc/wise-data/examples cp --reflink=auto -a ./src/test/wrong_est.out debian/wise-data/usr/share/doc/wise-data/examples sed -i -e 's?"../bin/$do"?"$do"?' -e 's?#!/usr/local/bin/perl?/usr/bin/perl?' debian/wise-data/usr/share/doc/wise-data/examples/testman.pl -make[1]: Leaving directory '/build/wise-2.4.1' +make[1]: uscita dalla directory "/build/wise-2.4.1" dh_installexamples -Nwise-doc -Nwise-data dh_installman install -d debian/wise/usr/share/man/man1/ @@ -5318,141 +5352,141 @@ install -p -m0644 ./debian/manpages.d/scanwise.1 debian/wise/usr/share/man/man1/scanwise.1 install -p -m0644 ./debian/manpages.d/scanwise_server.1 debian/wise/usr/share/man/man1/scanwise_server.1 man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/pswdb.1 > debian/wise/usr/share/man/man1/pswdb.1.dh-new - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/dnal.1 > debian/wise/usr/share/man/man1/dnal.1.dh-new - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/genewise.1 > debian/wise/usr/share/man/man1/genewise.1.dh-new - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/scanwise.1 > debian/wise/usr/share/man/man1/scanwise.1.dh-new - mv debian/wise/usr/share/man/man1/scanwise.1.dh-new debian/wise/usr/share/man/man1/scanwise.1 man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/genewisedb.1 > debian/wise/usr/share/man/man1/genewisedb.1.dh-new - mv debian/wise/usr/share/man/man1/dnal.1.dh-new debian/wise/usr/share/man/man1/dnal.1 - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/psw.1 > debian/wise/usr/share/man/man1/psw.1.dh-new - mv debian/wise/usr/share/man/man1/pswdb.1.dh-new debian/wise/usr/share/man/man1/pswdb.1 - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/dba.1 > debian/wise/usr/share/man/man1/dba.1.dh-new - mv debian/wise/usr/share/man/man1/genewise.1.dh-new debian/wise/usr/share/man/man1/genewise.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/dnal.1 > debian/wise/usr/share/man/man1/dnal.1.dh-new man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/estwise.1 > debian/wise/usr/share/man/man1/estwise.1.dh-new - mv debian/wise/usr/share/man/man1/genewisedb.1.dh-new debian/wise/usr/share/man/man1/genewisedb.1 - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/estwisedb.1 > debian/wise/usr/share/man/man1/estwisedb.1.dh-new mv debian/wise/usr/share/man/man1/estwise.1.dh-new debian/wise/usr/share/man/man1/estwise.1 man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/genomewise.1 > debian/wise/usr/share/man/man1/genomewise.1.dh-new - mv debian/wise/usr/share/man/man1/psw.1.dh-new debian/wise/usr/share/man/man1/psw.1 + mv debian/wise/usr/share/man/man1/dnal.1.dh-new debian/wise/usr/share/man/man1/dnal.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/scanwise.1 > debian/wise/usr/share/man/man1/scanwise.1.dh-new + mv debian/wise/usr/share/man/man1/genewisedb.1.dh-new debian/wise/usr/share/man/man1/genewisedb.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/dba.1 > debian/wise/usr/share/man/man1/dba.1.dh-new + mv debian/wise/usr/share/man/man1/pswdb.1.dh-new debian/wise/usr/share/man/man1/pswdb.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/scanwise_server.1 > debian/wise/usr/share/man/man1/scanwise_server.1.dh-new + mv debian/wise/usr/share/man/man1/scanwise.1.dh-new debian/wise/usr/share/man/man1/scanwise.1 man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/promoterwise.1 > debian/wise/usr/share/man/man1/promoterwise.1.dh-new + mv debian/wise/usr/share/man/man1/genomewise.1.dh-new debian/wise/usr/share/man/man1/genomewise.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/estwisedb.1 > debian/wise/usr/share/man/man1/estwisedb.1.dh-new mv debian/wise/usr/share/man/man1/dba.1.dh-new debian/wise/usr/share/man/man1/dba.1 - man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/scanwise_server.1 > debian/wise/usr/share/man/man1/scanwise_server.1.dh-new - mv debian/wise/usr/share/man/man1/estwisedb.1.dh-new debian/wise/usr/share/man/man1/estwisedb.1 - chmod 0644 -- debian/wise/usr/share/man/man1/scanwise.1 debian/wise/usr/share/man/man1/genewisedb.1 debian/wise/usr/share/man/man1/estwisedb.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/psw.1 > debian/wise/usr/share/man/man1/psw.1.dh-new mv debian/wise/usr/share/man/man1/scanwise_server.1.dh-new debian/wise/usr/share/man/man1/scanwise_server.1 - chmod 0644 -- debian/wise/usr/share/man/man1/pswdb.1 debian/wise/usr/share/man/man1/dba.1 debian/wise/usr/share/man/man1/scanwise_server.1 + man -l --recode UTF-8 ./debian/wise/usr/share/man/man1/genewise.1 > debian/wise/usr/share/man/man1/genewise.1.dh-new mv debian/wise/usr/share/man/man1/promoterwise.1.dh-new debian/wise/usr/share/man/man1/promoterwise.1 - chmod 0644 -- debian/wise/usr/share/man/man1/dnal.1 debian/wise/usr/share/man/man1/psw.1 debian/wise/usr/share/man/man1/promoterwise.1 - mv debian/wise/usr/share/man/man1/genomewise.1.dh-new debian/wise/usr/share/man/man1/genomewise.1 - chmod 0644 -- debian/wise/usr/share/man/man1/genewise.1 debian/wise/usr/share/man/man1/estwise.1 debian/wise/usr/share/man/man1/genomewise.1 + chmod 0644 -- debian/wise/usr/share/man/man1/dnal.1 debian/wise/usr/share/man/man1/scanwise.1 debian/wise/usr/share/man/man1/promoterwise.1 + mv debian/wise/usr/share/man/man1/estwisedb.1.dh-new debian/wise/usr/share/man/man1/estwisedb.1 + chmod 0644 -- debian/wise/usr/share/man/man1/estwise.1 debian/wise/usr/share/man/man1/genomewise.1 debian/wise/usr/share/man/man1/estwisedb.1 + mv debian/wise/usr/share/man/man1/psw.1.dh-new debian/wise/usr/share/man/man1/psw.1 + chmod 0644 -- debian/wise/usr/share/man/man1/genewisedb.1 debian/wise/usr/share/man/man1/dba.1 debian/wise/usr/share/man/man1/psw.1 + mv debian/wise/usr/share/man/man1/genewise.1.dh-new debian/wise/usr/share/man/man1/genewise.1 + chmod 0644 -- debian/wise/usr/share/man/man1/pswdb.1 debian/wise/usr/share/man/man1/scanwise_server.1 debian/wise/usr/share/man/man1/genewise.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/wise - cd debian/wise-data cd debian/wise-doc - chmod a-x usr/share/doc/wise/changelog.Debian usr/share/man/man1/dba.1 usr/share/man/man1/dnal.1 usr/share/man/man1/estwise.1 usr/share/man/man1/estwisedb.1 usr/share/man/man1/genewise.1 usr/share/man/man1/genewisedb.1 usr/share/man/man1/genomewise.1 usr/share/man/man1/promoterwise.1 usr/share/man/man1/psw.1 usr/share/man/man1/pswdb.1 usr/share/man/man1/scanwise.1 usr/share/man/man1/scanwise_server.1 + cd debian/wise-data chmod a-x usr/share/doc/wise-doc/changelog.Debian usr/share/doc/wise/api.pdf usr/share/doc/wise/dynamite.pdf usr/share/doc/wise/wise2.pdf - gzip -9nf usr/share/doc/wise/changelog.Debian usr/share/man/man1/dba.1 usr/share/man/man1/dnal.1 usr/share/man/man1/estwise.1 usr/share/man/man1/estwisedb.1 usr/share/man/man1/genewise.1 usr/share/man/man1/genewisedb.1 usr/share/man/man1/genomewise.1 usr/share/man/man1/promoterwise.1 usr/share/man/man1/psw.1 usr/share/man/man1/pswdb.1 usr/share/man/man1/scanwise.1 usr/share/man/man1/scanwise_server.1 gzip -9nf usr/share/doc/wise-doc/changelog.Debian usr/share/doc/wise/api.pdf usr/share/doc/wise/dynamite.pdf usr/share/doc/wise/wise2.pdf + chmod a-x usr/share/doc/wise/changelog.Debian usr/share/man/man1/dba.1 usr/share/man/man1/dnal.1 usr/share/man/man1/estwise.1 usr/share/man/man1/estwisedb.1 usr/share/man/man1/genewise.1 usr/share/man/man1/genewisedb.1 usr/share/man/man1/genomewise.1 usr/share/man/man1/promoterwise.1 usr/share/man/man1/psw.1 usr/share/man/man1/pswdb.1 usr/share/man/man1/scanwise.1 usr/share/man/man1/scanwise_server.1 + gzip -9nf usr/share/doc/wise/changelog.Debian usr/share/man/man1/dba.1 usr/share/man/man1/dnal.1 usr/share/man/man1/estwise.1 usr/share/man/man1/estwisedb.1 usr/share/man/man1/genewise.1 usr/share/man/man1/genewisedb.1 usr/share/man/man1/genomewise.1 usr/share/man/man1/promoterwise.1 usr/share/man/man1/psw.1 usr/share/man/man1/pswdb.1 usr/share/man/man1/scanwise.1 usr/share/man/man1/scanwise_server.1 chmod a-x usr/share/doc/wise-data/changelog.Debian usr/share/doc/wise-data/examples/HMM.ascii usr/share/doc/wise-data/examples/HMM.binary usr/share/doc/wise-data/examples/basic_cdna.out usr/share/doc/wise-data/examples/basic_dna.out usr/share/doc/wise-data/examples/basic_genomic.out usr/share/doc/wise-data/examples/dna.db usr/share/doc/wise-data/examples/estwise-db.out usr/share/doc/wise-data/examples/genewise-db-lite.out usr/share/doc/wise-data/examples/genewise-db.out usr/share/doc/wise-data/examples/genewisedb-pfam.out usr/share/doc/wise-data/examples/hmm_cdna.out usr/share/doc/wise-data/examples/hmm_genomic.out usr/share/doc/wise-data/examples/human.genomic usr/share/doc/wise-data/examples/pswdb.out usr/share/doc/wise-data/examples/rrm.HMM usr/share/doc/wise-data/examples/scanwisep.out usr/share/doc/wise-data/examples/wrong.hmm gzip -9nf usr/share/doc/wise-data/changelog.Debian usr/share/doc/wise-data/examples/HMM.ascii usr/share/doc/wise-data/examples/HMM.binary usr/share/doc/wise-data/examples/basic_cdna.out usr/share/doc/wise-data/examples/basic_dna.out usr/share/doc/wise-data/examples/basic_genomic.out usr/share/doc/wise-data/examples/dna.db usr/share/doc/wise-data/examples/estwise-db.out usr/share/doc/wise-data/examples/genewise-db-lite.out usr/share/doc/wise-data/examples/genewise-db.out usr/share/doc/wise-data/examples/genewisedb-pfam.out usr/share/doc/wise-data/examples/hmm_cdna.out usr/share/doc/wise-data/examples/hmm_genomic.out usr/share/doc/wise-data/examples/human.genomic usr/share/doc/wise-data/examples/pswdb.out usr/share/doc/wise-data/examples/rrm.HMM usr/share/doc/wise-data/examples/scanwisep.out usr/share/doc/wise-data/examples/wrong.hmm cd '/build/wise-2.4.1' cd '/build/wise-2.4.1' cd '/build/wise-2.4.1' dh_fixperms + find debian/wise -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/wise-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/wise-data -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 - find debian/wise -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 - find debian/wise-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/wise ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/wise-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/wise-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/wise-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/wise-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise/usr/share/doc -type f -a -true -a ! -regex 'debian/wise/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/wise-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/wise-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/wise-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise-data/usr/share/doc -type f -a -true -a ! -regex 'debian/wise-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/wise-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/wise-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/wise/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/wise-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wise/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/genewise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/genewise - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug debian/wise/usr/bin/genewise - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/dnal debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/dnal - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug debian/wise/usr/bin/dnal install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/fd objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/estwise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/fd/6d6314d018d640e3a32cb5f8b72236bdda37e1.debug chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/fd/6d6314d018d640e3a32cb5f8b72236bdda37e1.debug chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/fd/6d6314d018d640e3a32cb5f8b72236bdda37e1.debug strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/estwise objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/fd/6d6314d018d640e3a32cb5f8b72236bdda37e1.debug debian/wise/usr/bin/estwise - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/pswdb debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/pswdb - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug debian/wise/usr/bin/pswdb + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/dba debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/dba + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug debian/wise/usr/bin/dba install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/genewisedb debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/42/0da0f33d91fc0368809c0bb4d84358c058f268.debug chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/42/0da0f33d91fc0368809c0bb4d84358c058f268.debug chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/42/0da0f33d91fc0368809c0bb4d84358c058f268.debug strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/genewisedb objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/42/0da0f33d91fc0368809c0bb4d84358c058f268.debug debian/wise/usr/bin/genewisedb - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/scanwise_server debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/scanwise_server - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug debian/wise/usr/bin/scanwise_server - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/promoterwise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/promoterwise - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug debian/wise/usr/bin/promoterwise + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/genewise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/genewise + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/08/283fc5a8839bfbe794d74865d6ac9dd55722bd.debug debian/wise/usr/bin/genewise + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/scanwise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/scanwise + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug debian/wise/usr/bin/scanwise + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/psw debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/psw + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug debian/wise/usr/bin/psw install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/estwisedb debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/9c/621e74ea10fc730298da338163f0f43409fe2a.debug chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/9c/621e74ea10fc730298da338163f0f43409fe2a.debug chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/9c/621e74ea10fc730298da338163f0f43409fe2a.debug strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/estwisedb objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/9c/621e74ea10fc730298da338163f0f43409fe2a.debug debian/wise/usr/bin/estwisedb + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/dnal debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/dnal + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/58/08eb3d12490aafcbdf5e468555dc7ed546093f.debug debian/wise/usr/bin/dnal install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/genomewise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/60/bcbb44efe2eac65a1d874d321a52c8fbedebba.debug chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/60/bcbb44efe2eac65a1d874d321a52c8fbedebba.debug chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/60/bcbb44efe2eac65a1d874d321a52c8fbedebba.debug strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/genomewise objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/60/bcbb44efe2eac65a1d874d321a52c8fbedebba.debug debian/wise/usr/bin/genomewise - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/psw debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/psw - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/89/58fb3787ca1e294475a05792bb309271b49139.debug debian/wise/usr/bin/psw - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/scanwise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/scanwise - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/67/08322bb7b3ab04b6a623234753c1349e4df4b6.debug debian/wise/usr/bin/scanwise - install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5 - objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/dba debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug - chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug - chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug - strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/dba - objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/d5/9c08763ccb7338de454576a5227a744131ed4a.debug debian/wise/usr/bin/dba + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/promoterwise debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/promoterwise + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/05/2ee1d3ee45716435a51913b5b40225acfecf31.debug debian/wise/usr/bin/promoterwise + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/scanwise_server debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/scanwise_server + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/e9/4e9653588d94f7f518b3a7bf5f02e85bbb57df.debug debian/wise/usr/bin/scanwise_server + install -d debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9 + objcopy --only-keep-debug --compress-debug-sections debian/wise/usr/bin/pswdb debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug + chmod 0644 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug + chown 0:0 -- debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug + strip --remove-section=.comment --remove-section=.note debian/wise/usr/bin/pswdb + objcopy --add-gnu-debuglink debian/.debhelper/wise/dbgsym-root/usr/lib/debug/.build-id/c9/68bfb621384892b350af53261e61f9db1a1371.debug debian/wise/usr/bin/pswdb install -d debian/.debhelper/wise/dbgsym-root/usr/share/doc ln -s wise debian/.debhelper/wise/dbgsym-root/usr/share/doc/wise-dbgsym dh_makeshlibs @@ -5461,7 +5495,7 @@ rm -f debian/wise-data/DEBIAN/shlibs dh_shlibdeps install -d debian/wise/DEBIAN - dpkg-shlibdeps -Tdebian/wise.substvars debian/wise/usr/bin/genewise debian/wise/usr/bin/dnal debian/wise/usr/bin/estwise debian/wise/usr/bin/pswdb debian/wise/usr/bin/genewisedb debian/wise/usr/bin/scanwise_server debian/wise/usr/bin/promoterwise debian/wise/usr/bin/estwisedb debian/wise/usr/bin/genomewise debian/wise/usr/bin/psw debian/wise/usr/bin/scanwise debian/wise/usr/bin/dba + dpkg-shlibdeps -Tdebian/wise.substvars debian/wise/usr/bin/estwise debian/wise/usr/bin/dba debian/wise/usr/bin/genewisedb debian/wise/usr/bin/genewise debian/wise/usr/bin/scanwise debian/wise/usr/bin/psw debian/wise/usr/bin/estwisedb debian/wise/usr/bin/dnal debian/wise/usr/bin/genomewise debian/wise/usr/bin/promoterwise debian/wise/usr/bin/scanwise_server debian/wise/usr/bin/pswdb dh_installdeb install -d debian/wise-doc/DEBIAN install -d debian/wise-data/DEBIAN @@ -5476,18 +5510,18 @@ echo misc:Pre-Depends= >> debian/wise.substvars install -d debian/.debhelper/wise/dbgsym-root/DEBIAN dpkg-gencontrol -pwise -ldebian/changelog -Tdebian/wise.substvars -Pdebian/.debhelper/wise/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=wise-dbgsym "-DDepends=wise (= \${binary:Version})" "-DDescription=debug symbols for wise" "-DBuild-Ids=052ee1d3ee45716435a51913b5b40225acfecf31 08283fc5a8839bfbe794d74865d6ac9dd55722bd 420da0f33d91fc0368809c0bb4d84358c058f268 5808eb3d12490aafcbdf5e468555dc7ed546093f 60bcbb44efe2eac65a1d874d321a52c8fbedebba 6708322bb7b3ab04b6a623234753c1349e4df4b6 8958fb3787ca1e294475a05792bb309271b49139 9c621e74ea10fc730298da338163f0f43409fe2a c968bfb621384892b350af53261e61f9db1a1371 d59c08763ccb7338de454576a5227a744131ed4a e94e9653588d94f7f518b3a7bf5f02e85bbb57df fd6d6314d018d640e3a32cb5f8b72236bdda37e1" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/wise-data/DEBIAN/control - chown 0:0 -- debian/wise-data/DEBIAN/control chmod 0644 -- debian/wise-doc/DEBIAN/control chown 0:0 -- debian/wise-doc/DEBIAN/control + chmod 0644 -- debian/wise-data/DEBIAN/control + chown 0:0 -- debian/wise-data/DEBIAN/control chmod 0644 -- debian/.debhelper/wise/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/wise/dbgsym-root/DEBIAN/control dpkg-gencontrol -pwise -ldebian/changelog -Tdebian/wise.substvars -Pdebian/wise -UMulti-Arch chmod 0644 -- debian/wise/DEBIAN/control chown 0:0 -- debian/wise/DEBIAN/control dh_md5sums - cd debian/wise >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/wise-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/wise >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/wise-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/wise-data/DEBIAN/md5sums chown 0:0 -- debian/wise-data/DEBIAN/md5sums @@ -5500,25 +5534,27 @@ chown 0:0 -- debian/.debhelper/wise/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/wise .. - dpkg-deb --build debian/wise-data .. - dpkg-deb --build debian/wise-doc .. dpkg-deb --build debian/.debhelper/wise/dbgsym-root .. -dpkg-deb: building package 'wise' in '../wise_2.4.1-21_armhf.deb'. -dpkg-deb: building package 'wise-data' in '../wise-data_2.4.1-21_all.deb'. -dpkg-deb: building package 'wise-doc' in '../wise-doc_2.4.1-21_all.deb'. -dpkg-deb: building package 'wise-dbgsym' in '../wise-dbgsym_2.4.1-21_armhf.deb'. + dpkg-deb --build debian/wise-doc .. + dpkg-deb --build debian/wise-data .. +dpkg-deb: generazione del pacchetto "wise-doc" in "../wise-doc_2.4.1-21_all.deb". +dpkg-deb: generazione del pacchetto "wise-data" in "../wise-data_2.4.1-21_all.deb". +dpkg-deb: generazione del pacchetto "wise" in "../wise_2.4.1-21_armhf.deb". +dpkg-deb: generazione del pacchetto "wise-dbgsym" in "../wise-dbgsym_2.4.1-21_armhf.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../wise_2.4.1-21_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/5619/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5619/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5690 and its subdirectories -I: Current time: Thu Jun 18 05:59:23 -12 2020 -I: pbuilder-time-stamp: 1592503163 +I: removing directory /srv/workspace/pbuilder/5619 and its subdirectories +I: Current time: Fri Jun 19 08:29:31 +14 2020 +I: pbuilder-time-stamp: 1592504971