Diff of the two buildlogs: -- --- b1/build.log 2020-09-01 09:12:14.938028725 +0000 +++ b2/build.log 2020-09-01 09:37:17.898149769 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 31 20:24:51 -12 2020 -I: pbuilder-time-stamp: 1598948691 +I: Current time: Tue Sep 1 23:12:31 +14 2020 +I: pbuilder-time-stamp: 1598951551 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jan 10 02:35:50 2019 -12 +gpgv: Signature made Fri Jan 11 04:35:50 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -44,136 +44,170 @@ dpkg-source: info: applying sphinx.ext.pngmath.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1494/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/15525/tmp/hooks/D01_modify_environment starting +debug: Running on ff64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/15525/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/15525/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='43492d1a33e347fabb85faae9bdbd884' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1494' - PS1='# ' - PS2='> ' + INVOCATION_ID=f2881f7b381f4e2a81903ef9f311749f + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=15525 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.G8zQaXGDQu/pbuilderrc_NfOy --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.G8zQaXGDQu/b1 --logfile b1/build.log python-cogent_1.9-14.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.G8zQaXGDQu/pbuilderrc_zSxp --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.G8zQaXGDQu/b2 --logfile b2/build.log python-cogent_1.9-14.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtk1a 4.19.0-10-armmp-lpae #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux + Linux i-capture-the-hostname 4.19.0-10-arm64 #1 SMP Debian 4.19.132-1 (2020-07-24) aarch64 GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 30 20:27 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/1494/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 1 23:12 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 31 22:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/15525/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -520,7 +554,7 @@ Get: 269 http://deb.debian.org/debian buster/main armhf rdp-readseq all 2.0.2-6 [453 kB] Get: 270 http://deb.debian.org/debian buster/main armhf rdp-classifier all 2.10.2-4 [227 kB] Get: 271 http://deb.debian.org/debian buster/main armhf rtax all 0.984-6 [26.2 kB] -Fetched 181 MB in 1min 20s (2253 kB/s) +Fetched 181 MB in 29s (6321 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -1625,134 +1659,134 @@ Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:Buypass_Class_2_Root_CA.pem -Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:TWCA_Global_Root_CA.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem -Adding debian:GeoTrust_Universal_CA.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:Go_Daddy_Class_2_CA.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:ACCVRAIZ1.pem Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:Deutsche_Telekom_Root_CA_2.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:Comodo_AAA_Services_root.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem -Adding debian:certSIGN_ROOT_CA.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem +Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:ACCVRAIZ1.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem -Adding debian:ISRG_Root_X1.pem -Adding debian:Trustis_FPS_Root_CA.pem +Adding debian:thawte_Primary_Root_CA_-_G2.pem +Adding debian:AffirmTrust_Commercial.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:CFCA_EV_ROOT.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem -Adding debian:Certinomis_-_Root_CA.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem +Adding debian:Certigna.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem -Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:DST_Root_CA_X3.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem +Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Amazon_Root_CA_2.pem -Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem -Adding debian:SecureSign_RootCA11.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:AffirmTrust_Networking.pem Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:XRamp_Global_CA_Root.pem -Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:GeoTrust_Global_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:Comodo_AAA_Services_root.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem +Adding debian:QuoVadis_Root_CA.pem +Adding debian:Izenpe.com.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:Amazon_Root_CA_4.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:Security_Communication_Root_CA.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:ePKI_Root_Certification_Authority.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:Certinomis_-_Root_CA.pem Adding debian:LuxTrust_Global_Root_2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem -Adding debian:Amazon_Root_CA_1.pem -Adding debian:thawte_Primary_Root_CA_-_G2.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:EC-ACC.pem -Adding debian:Cybertrust_Global_Root.pem +Adding debian:thawte_Primary_Root_CA.pem Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:GeoTrust_Global_CA.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:TWCA_Root_Certification_Authority.pem +Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:Secure_Global_CA.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:thawte_Primary_Root_CA.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:thawte_Primary_Root_CA_-_G3.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:DigiCert_Global_Root_CA.pem +Adding debian:XRamp_Global_CA_Root.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:Certum_Trusted_Network_CA.pem +Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem -Adding debian:Certplus_Class_2_Primary_CA.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:SecureSign_RootCA11.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:Secure_Global_CA.pem -Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem +Adding debian:Trustis_FPS_Root_CA.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:Taiwan_GRCA.pem +Adding debian:COMODO_RSA_Certification_Authority.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Baltimore_CyberTrust_Root.pem +Adding debian:Microsec_e-Szigno_Root_CA_2009.pem +Adding debian:SecureTrust_CA.pem +Adding debian:QuoVadis_Root_CA_2.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:Certplus_Class_2_Primary_CA.pem +Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:AddTrust_External_Root.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:DST_Root_CA_X3.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:USERTrust_RSA_Certification_Authority.pem +Adding debian:EC-ACC.pem +Adding debian:COMODO_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem +Adding debian:thawte_Primary_Root_CA_-_G3.pem +Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:Cybertrust_Global_Root.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:DigiCert_Assured_ID_Root_CA.pem +Adding debian:TrustCor_RootCert_CA-2.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:CA_Disig_Root_R2.pem Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:Certum_Trusted_Network_CA_2.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:COMODO_ECC_Certification_Authority.pem -Adding debian:AddTrust_External_Root.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:E-Tugra_Certification_Authority.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:GlobalSign_Root_CA.pem -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:Taiwan_GRCA.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem -Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:SecureTrust_CA.pem -Adding debian:Certigna.pem -Adding debian:Starfield_Class_2_CA.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:Izenpe.com.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:DigiCert_Global_Root_CA.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:Network_Solutions_Certificate_Authority.pem done. Setting up ant-optional (1.10.5-2) ... Setting up libistack-commons-java (3.0.6-3) ... @@ -1805,7 +1839,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-cogent-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/python-cogent-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-cogent dpkg-buildpackage: info: source version 1.9-14 dpkg-buildpackage: info: source distribution unstable @@ -1942,225 +1976,225 @@ creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent copying cogent/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/dp_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/pairwise.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/traceback.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/indel_positions.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/indel_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/align.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/progressive.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/pycompare.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/indel_positions.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align copying cogent/align/algorithm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align -copying cogent/align/progressive.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/dp_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align +copying cogent/align/align.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights -copying cogent/align/weights/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights copying cogent/align/weights/methods.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights +copying cogent/align/weights/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights copying cogent/align/weights/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/seqprep.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/sffinfo.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/uclust.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/raxml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/muscle_v38.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cdbfasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/flash.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/bwa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cd_hit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/pplacer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/fasttree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/carnac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/fastq_join.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/sfffile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/raxml_v730.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/raxml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/infernal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/muscle_v38.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/bwa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/parsinsert.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/guppy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/muscle.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/blat.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/vienna_package.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/gctmpca.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/clearcut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/parsinsert.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/parameters.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/clustalw.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/mafft.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/formatdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cdbfasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/mothur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/blat.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/cd_hit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/muscle.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/fasttree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/raxml_v730.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/dotur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/clearcut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/fastq_join.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/usearch.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/pandaseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/sffinfo.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/dotur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/guppy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/clustalw.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app copying cogent/app/rtax.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/vienna_package.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/flash.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app -copying cogent/app/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/sfffile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app +copying cogent/app/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/nmds.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/procrustes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster +copying cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/approximate_mds.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster copying cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster -copying cogent/cluster/nmds.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/bitvector.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/annotation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/entity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/moltype.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/alphabet.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/genetic_code.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/usage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/profile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/info.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/genetic_code.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/entity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core copying cogent/core/location.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/profile.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/info.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core -copying cogent/core/moltype.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/annotation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/bitvector.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core +copying cogent/core/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data +copying cogent/data/energy_params.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data +copying cogent/data/ligand_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/nucleic_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data -copying cogent/data/protein_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data -copying cogent/data/energy_params.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data copying cogent/data/molecular_weight.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data -copying cogent/data/ligand_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data +copying cogent/data/protein_properties.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db copying cogent/db/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db +copying cogent/db/ncbi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db copying cogent/db/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db copying cogent/db/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db copying cogent/db/rfam.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db -copying cogent/db/ncbi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/database.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/name.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/region.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/host.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/database.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/name.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/species.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/related_region.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl -copying cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl copying cogent/db/ensembl/genome.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/species.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl +copying cogent/db/ensembl/host.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/legend.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/linear.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/compatibility.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/dotplot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/codon_usage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/dinuc.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/dendrogram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw copying cogent/draw/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/dotplot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/compatibility.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw -copying cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/dendrogram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw +copying cogent/draw/legend.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/coevolution.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/predicate.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/best_likelihood.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/models.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/solved_models.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve -copying cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/models.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/predicate.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/substitution_model.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve +copying cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve copying cogent/evolve/simulate.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/stockholm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/rna_struct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/xyzrn.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/structure.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/rna_struct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/text_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/motif.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/nexus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/pdb_color.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/text_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/stockholm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/xyzrn.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format +copying cogent/format/pdb_color.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format copying cogent/format/bedgraph.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/motif.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format -copying cogent/format/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/geometry.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/solve.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/svd.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/optimisers.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/matrix_logarithm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/distance_transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/svd.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/distance_transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/fit_function.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths +copying cogent/maths/solve.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths copying cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths -copying cogent/maths/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix copying cogent/maths/matrix/distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix copying cogent/maths/matrix/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/jackknife.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/rarefaction.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/test.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/special.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/jackknife.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/alpha_diversity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/histogram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/distribution.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/rarefaction.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats copying cogent/maths/stats/ks.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/period.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats -copying cogent/maths/stats/alpha_diversity.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats +copying cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai -copying cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai copying cogent/maths/stats/cai/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai -copying cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai +copying cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai copying cogent/maths/stats/cai/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai +copying cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac -copying cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac -copying cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac copying cogent/maths/unifrac/fast_tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac +copying cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac +copying cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial copying cogent/maths/spatial/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif @@ -2168,151 +2202,151 @@ copying cogent/motif/k_word.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif copying cogent/motif/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/record_finder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/hmmscan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/newick.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/gbseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/meme.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/tree_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/blast_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/unigene.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/ebi.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/aaindex.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/record.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rna_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/carnac.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/psl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rna_fold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/locuslink.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/greengenes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/macsim.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/gcg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/tinyseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/paml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/record.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/msms.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/infernal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/stockholm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/gff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/unigene.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/tinyseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnaforester.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/tree_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/fastq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/infernal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/macsim.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/foldalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/structure.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/locuslink.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/flowgram_collection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/ncbi_taxonomy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/ct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/comrna.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/unafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/structure.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/meme.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/blast_xml.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/bowtie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/hmmscan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/column.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/mothur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cigar.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cutg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/stride.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/bpseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/flowgram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/psl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/aaindex.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/greengenes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/binary_sff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/nexus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/dynalign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/record_finder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/knetfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/sprinzl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/mfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnashapes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/ilm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/sfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/phylip.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/genbank.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/sprinzl.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cove.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/clustal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rna_fold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/stockholm.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/fastq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/ct.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/gibbs.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/pfold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/bowtie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/dotur.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rna_plot.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/rfam.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/gbseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/pdb.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/kegg_taxonomy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/cut.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/blast.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/contrafold.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/dialign.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cigar.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/gcg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/gff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/consan.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cutg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/ncbi_taxonomy.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rnaview.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/flowgram.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/rfam.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/newick.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/bpseq.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse copying cogent/parse/illumina_sequence.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/binary_sff.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/mage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse -copying cogent/parse/nupack.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse +copying cogent/parse/cmfinder.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/maximum_likelihood.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/least_squares.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo -copying cogent/phylo/nj.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/least_squares.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/distance.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo +copying cogent/phylo/nj.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/tree_collection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/tree_space.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo copying cogent/phylo/consensus.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation -copying cogent/recalculation/definition.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation -copying cogent/recalculation/setting.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation copying cogent/recalculation/scope.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation -copying cogent/recalculation/calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation +copying cogent/recalculation/setting.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation copying cogent/recalculation/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation +copying cogent/recalculation/calculation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation +copying cogent/recalculation/definition.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/analysis.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/randomization.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/usage.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/microarray.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/randomization.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/markov.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim copying cogent/seqsim/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim -copying cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/tree.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim +copying cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/annotation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/manipulation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/rna2d.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/knots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/contact.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/asa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/selection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/dihedral.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/manipulation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/asa.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/contact.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/annotation.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct copying cogent/struct/pairs_util.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct -copying cogent/struct/selection.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct +copying cogent/struct/knots.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct creating /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/progress_display.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/parallel.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/option_parsing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/datatypes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/modules.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/recode_alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/dict2d.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/update_version.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/checkpointing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/dict_array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/progress_display.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/warning.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/recode_alignment.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/organizer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/checkpointing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/terminal.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/misc.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/dict_array.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/modules.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/datatypes.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/__init__.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/transform.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util -copying cogent/util/trie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util copying cogent/util/unit_test.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/table.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/trie.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/misc.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/parallel.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/option_parsing.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/dict2d.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/organizer.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util +copying cogent/util/update_version.py -> /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util running build_ext building 'cogent.align._compare' extension creating build @@ -2733,16 +2767,16 @@ BLASTMAT=/usr/share/ncbi/data/ RDP_JAR_PATH=/usr/share/java/rdp_classifier.jar /build/python-cogent-1.9/run_tests -v # --debug running build_ext building 'cogent.align._compare' extension -creating build/temp.linux-armv7l-2.7 -creating build/temp.linux-armv7l-2.7/cogent -creating build/temp.linux-armv7l-2.7/cogent/align -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_compare.c -o build/temp.linux-armv7l-2.7/cogent/align/_compare.o -creating build/lib.linux-armv7l-2.7 -creating build/lib.linux-armv7l-2.7/cogent -creating build/lib.linux-armv7l-2.7/cogent/align -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/align/_compare.o -o build/lib.linux-armv7l-2.7/cogent/align/_compare.so +creating build/temp.linux-aarch64-2.7 +creating build/temp.linux-aarch64-2.7/cogent +creating build/temp.linux-aarch64-2.7/cogent/align +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_compare.c -o build/temp.linux-aarch64-2.7/cogent/align/_compare.o +creating build/lib.linux-aarch64-2.7 +creating build/lib.linux-aarch64-2.7/cogent +creating build/lib.linux-aarch64-2.7/cogent/align +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/align/_compare.o -o build/lib.linux-aarch64-2.7/cogent/align/_compare.so building 'cogent.align._pairwise_seqs' extension -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_seqs.c -o build/temp.linux-armv7l-2.7/cogent/align/_pairwise_seqs.o +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_seqs.c -o build/temp.linux-aarch64-2.7/cogent/align/_pairwise_seqs.o cogent/align/_pairwise_seqs.c:2425:12: warning: '__pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_seqs_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_seqs_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, long *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2780,9 +2814,9 @@ cogent/align/_pairwise_seqs.c:3776:8: note: '__pyx_v_pointer_a' was declared here long __pyx_v_pointer_a; ^~~~~~~~~~~~~~~~~ -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/align/_pairwise_seqs.o -o build/lib.linux-armv7l-2.7/cogent/align/_pairwise_seqs.so +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/align/_pairwise_seqs.o -o build/lib.linux-aarch64-2.7/cogent/align/_pairwise_seqs.so building 'cogent.align._pairwise_pogs' extension -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_pogs.c -o build/temp.linux-armv7l-2.7/cogent/align/_pairwise_pogs.o +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/align/_pairwise_pogs.c -o build/temp.linux-aarch64-2.7/cogent/align/_pairwise_pogs.o cogent/align/_pairwise_pogs.c:2458:12: warning: '__pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_pogs_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_1__pyx_f_6cogent_5align_14_pairwise_pogs_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, long *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2820,10 +2854,10 @@ cogent/align/_pairwise_pogs.c:3819:8: note: '__pyx_v_pointer_a' was declared here long __pyx_v_pointer_a; ^~~~~~~~~~~~~~~~~ -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/align/_pairwise_pogs.o -o build/lib.linux-armv7l-2.7/cogent/align/_pairwise_pogs.so +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/align/_pairwise_pogs.o -o build/lib.linux-aarch64-2.7/cogent/align/_pairwise_pogs.so building 'cogent.evolve._solved_models' extension -creating build/temp.linux-armv7l-2.7/cogent/evolve -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_solved_models.c -o build/temp.linux-armv7l-2.7/cogent/evolve/_solved_models.o +creating build/temp.linux-aarch64-2.7/cogent/evolve +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_solved_models.c -o build/temp.linux-aarch64-2.7/cogent/evolve/_solved_models.o cogent/evolve/_solved_models.c:2426:12: warning: '__pyx_fuse_2__pyx_f_6cogent_6evolve_14_solved_models_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_2__pyx_f_6cogent_6evolve_14_solved_models_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, int *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2833,19 +2867,19 @@ cogent/evolve/_solved_models.c:2120:12: warning: '__pyx_fuse_0__pyx_f_6cogent_6evolve_14_solved_models_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_0__pyx_f_6cogent_6evolve_14_solved_models_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, Py_ssize_t *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -creating build/lib.linux-armv7l-2.7/cogent/evolve -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/evolve/_solved_models.o -o build/lib.linux-armv7l-2.7/cogent/evolve/_solved_models.so +creating build/lib.linux-aarch64-2.7/cogent/evolve +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/evolve/_solved_models.o -o build/lib.linux-aarch64-2.7/cogent/evolve/_solved_models.so building 'cogent.evolve._likelihood_tree' extension -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_likelihood_tree.c -o build/temp.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.o +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_likelihood_tree.c -o build/temp.linux-aarch64-2.7/cogent/evolve/_likelihood_tree.o cogent/evolve/_likelihood_tree.c:2307:12: warning: '__pyx_fuse_1__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_1__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, long *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cogent/evolve/_likelihood_tree.c:2177:12: warning: '__pyx_fuse_0__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim' defined but not used [-Wunused-function] static int __pyx_fuse_0__pyx_f_6cogent_6evolve_16_likelihood_tree_checkDim(PyObject *__pyx_v_dimension, Py_ssize_t __pyx_v_val, Py_ssize_t *__pyx_v_var) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.o -o build/lib.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.so +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/evolve/_likelihood_tree.o -o build/lib.linux-aarch64-2.7/cogent/evolve/_likelihood_tree.so building 'cogent.evolve._pairwise_distance' extension -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_pairwise_distance.c -o build/temp.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.o +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/evolve/_pairwise_distance.c -o build/temp.linux-aarch64-2.7/cogent/evolve/_pairwise_distance.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2853,10 +2887,10 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.o -o build/lib.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.so +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/evolve/_pairwise_distance.o -o build/lib.linux-aarch64-2.7/cogent/evolve/_pairwise_distance.so building 'cogent.struct._asa' extension -creating build/temp.linux-armv7l-2.7/cogent/struct -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_asa.c -o build/temp.linux-armv7l-2.7/cogent/struct/_asa.o +creating build/temp.linux-aarch64-2.7/cogent/struct +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_asa.c -o build/temp.linux-aarch64-2.7/cogent/struct/_asa.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2864,10 +2898,10 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -creating build/lib.linux-armv7l-2.7/cogent/struct -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/struct/_asa.o -o build/lib.linux-armv7l-2.7/cogent/struct/_asa.so +creating build/lib.linux-aarch64-2.7/cogent/struct +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/struct/_asa.o -o build/lib.linux-aarch64-2.7/cogent/struct/_asa.so building 'cogent.struct._contact' extension -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_contact.c -o build/temp.linux-armv7l-2.7/cogent/struct/_contact.o +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/struct/_contact.c -o build/temp.linux-aarch64-2.7/cogent/struct/_contact.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2875,10 +2909,10 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/struct/_contact.o -o build/lib.linux-armv7l-2.7/cogent/struct/_contact.so +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/struct/_contact.o -o build/lib.linux-aarch64-2.7/cogent/struct/_contact.so building 'cogent.maths._period' extension -creating build/temp.linux-armv7l-2.7/cogent/maths -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/_period.c -o build/temp.linux-armv7l-2.7/cogent/maths/_period.o +creating build/temp.linux-aarch64-2.7/cogent/maths +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/_period.c -o build/temp.linux-aarch64-2.7/cogent/maths/_period.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2886,11 +2920,11 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -creating build/lib.linux-armv7l-2.7/cogent/maths -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/maths/_period.o -o build/lib.linux-armv7l-2.7/cogent/maths/_period.so +creating build/lib.linux-aarch64-2.7/cogent/maths +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/maths/_period.o -o build/lib.linux-aarch64-2.7/cogent/maths/_period.so building 'cogent.maths.spatial.ckd3' extension -creating build/temp.linux-armv7l-2.7/cogent/maths/spatial -arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/spatial/ckd3.c -o build/temp.linux-armv7l-2.7/cogent/maths/spatial/ckd3.o +creating build/temp.linux-aarch64-2.7/cogent/maths/spatial +arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c cogent/maths/spatial/ckd3.c -o build/temp.linux-aarch64-2.7/cogent/maths/spatial/ckd3.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -2898,18 +2932,18 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -creating build/lib.linux-armv7l-2.7/cogent/maths/spatial -arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/cogent/maths/spatial/ckd3.o -o build/lib.linux-armv7l-2.7/cogent/maths/spatial/ckd3.so -copying build/lib.linux-armv7l-2.7/cogent/align/_compare.so -> cogent/align -copying build/lib.linux-armv7l-2.7/cogent/align/_pairwise_seqs.so -> cogent/align -copying build/lib.linux-armv7l-2.7/cogent/align/_pairwise_pogs.so -> cogent/align -copying build/lib.linux-armv7l-2.7/cogent/evolve/_solved_models.so -> cogent/evolve -copying build/lib.linux-armv7l-2.7/cogent/evolve/_likelihood_tree.so -> cogent/evolve -copying build/lib.linux-armv7l-2.7/cogent/evolve/_pairwise_distance.so -> cogent/evolve -copying build/lib.linux-armv7l-2.7/cogent/struct/_asa.so -> cogent/struct -copying build/lib.linux-armv7l-2.7/cogent/struct/_contact.so -> cogent/struct -copying build/lib.linux-armv7l-2.7/cogent/maths/_period.so -> cogent/maths -copying build/lib.linux-armv7l-2.7/cogent/maths/spatial/ckd3.so -> cogent/maths/spatial +creating build/lib.linux-aarch64-2.7/cogent/maths/spatial +arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cogent-1.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/cogent/maths/spatial/ckd3.o -o build/lib.linux-aarch64-2.7/cogent/maths/spatial/ckd3.so +copying build/lib.linux-aarch64-2.7/cogent/align/_compare.so -> cogent/align +copying build/lib.linux-aarch64-2.7/cogent/align/_pairwise_seqs.so -> cogent/align +copying build/lib.linux-aarch64-2.7/cogent/align/_pairwise_pogs.so -> cogent/align +copying build/lib.linux-aarch64-2.7/cogent/evolve/_solved_models.so -> cogent/evolve +copying build/lib.linux-aarch64-2.7/cogent/evolve/_likelihood_tree.so -> cogent/evolve +copying build/lib.linux-aarch64-2.7/cogent/evolve/_pairwise_distance.so -> cogent/evolve +copying build/lib.linux-aarch64-2.7/cogent/struct/_asa.so -> cogent/struct +copying build/lib.linux-aarch64-2.7/cogent/struct/_contact.so -> cogent/struct +copying build/lib.linux-aarch64-2.7/cogent/maths/_period.so -> cogent/maths +copying build/lib.linux-aarch64-2.7/cogent/maths/spatial/ckd3.so -> cogent/maths/spatial Can't find blat executable: skipping test Can't find carnac executable: skipping test Can't find cmfinder.pl executable: skipping test @@ -9927,7 +9961,7 @@ Tests for ungapped_to_pdb function using protein pdb chains. ... ok ---------------------------------------------------------------------- -Ran 3577 tests in 979.313s +Ran 3577 tests in 639.913s OK # restore original tests file @@ -9951,737 +9985,737 @@ creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/geometry.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/solve.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/svd.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_logarithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponentiation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/svd.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/jackknife.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/rarefaction.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/test.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/special.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/jackknife.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/alpha_diversity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/histogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/distribution.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/ks.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/information_criteria.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/rarefaction.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/get_by_cai.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/ks.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/alpha_diversity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/distance_transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_unifrac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/unifrac/fast_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/cai/adaptor.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/stats/kendall.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimisers.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/function_optimisation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/scipy_optimize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/_period.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/distance_transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/fit_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/solve.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial/ckd3.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/spatial/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/_period.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/simannealingoptimiser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/matrix_exponential_integration.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/maths/period.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/rna_struct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb_color.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/text_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/xyzrn.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/bedgraph.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/motif.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/k_word.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/energy_params.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/ligand_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/nucleic_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/molecular_weight.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/protein_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_pairwise_distance.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_likelihood_tree.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/coevolution.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/predicate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_function.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_solved_models.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/best_likelihood.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/solved_models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_likelihood_tree.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/motif_prob_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/discrete_markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/parameter_controller.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/bootstrap.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_pairwise_distance.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/models.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/predicate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/substitution_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/likelihood_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/pairwise_distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/simulate.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/evolve/_solved_models.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/modules.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/recode_alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict_array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/progress_display.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/warning.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/checkpointing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/terminal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/datatypes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/unit_test.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/trie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/misc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/parallel.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/option_parsing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/organizer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/update_version.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/nmds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/procrustes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/approximate_mds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/rna_struct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/xyzrn.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/text_tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/motif.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/pdb_color.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/format/bedgraph.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/rna2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/selection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_asa.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/dihedral.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/manipulation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/asa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/contact.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/pairs_util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/knots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_contact.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/linear.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/compatibility.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dotplot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/codon_usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dinuc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dendrogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/legend.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record_finder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/hmmscan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/newick.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gbseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/meme.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unigene.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ebi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/aaindex.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/carnac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/psl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_fold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/locuslink.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/greengenes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/macsim.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gcg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tinyseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/infernal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unigene.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tinyseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/fastq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/infernal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/macsim.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/locuslink.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram_collection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ncbi_taxonomy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/structure.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/meme.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast_xml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bowtie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/hmmscan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/column.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_ko.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram_parser.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mothur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cigar.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cutg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bpseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/psl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/aaindex.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/greengenes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/binary_sff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/nexus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/record_finder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sprinzl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/phylip.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/genbank.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/sprinzl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/clustal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_fold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/stockholm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/fastq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ct.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gibbs.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bowtie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dotur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rna_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gbseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_taxonomy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/paml_matrix.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/agilent_microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cigar.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gcg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/gff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_fasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cutg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/ncbi_taxonomy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/kegg_pos.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/flowgram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/newick.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/bpseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/illumina_sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/binary_sff.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/mage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/nucleic_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/protein_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/energy_params.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/molecular_weight.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/data/ligand_properties.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_pogs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/dp_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pairwise.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_seqs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_compare.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/methods.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/traceback.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_positions.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/align.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pycompare.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/algorithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/progressive.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/distribution_plots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/multivariate_plot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/legend.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/rlg2mpl.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/linear.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/arrow_rates.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/codon_usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dinuc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dendrogram.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/dotplot.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/compatibility.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/draw/fancy_arrow.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/analysis.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/randomization.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/parse/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ncbi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/database.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/name.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/related_region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/genome.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/species.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/host.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/maximum_likelihood.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/least_squares.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/nj.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/least_squares.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/distance.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/nj.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/tree_collection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/tree_space.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/phylo/consensus.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/analysis.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/sequence_generators.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray_normalize.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/searchpath.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/microarray.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/randomization.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/markov.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/seqsim/birth_death.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/seqprep.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sffinfo.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/uclust.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle_v38.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cdbfasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/flash.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/bwa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cd_hit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pplacer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/carnac.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fastq_join.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfffile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml_v730.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree_v1.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaforester.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/msms.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/infernal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle_v38.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/bwa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parsinsert.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/guppy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/comrna.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blat.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/vienna_package.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/gctmpca.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clearcut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/foldalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parsinsert.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/parameters.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clustalw.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mafft.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/unafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/formatdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cdbfasta.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mothur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blat.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/stride.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaalifold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cove.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rdp_classifier20.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cd_hit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dynalign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/muscle.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/knetfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fasttree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/mfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnashapes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/ilm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/raxml_v730.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dotur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/blast.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clearcut.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/fastq_join.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/usearch.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/contrafold.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pandaseq.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sffinfo.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dotur.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/dialign.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/guppy.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/clustalw.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/consan.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rnaview.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/pknotsrg.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/rtax.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/vienna_package.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/flash.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/nupack.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/progress_display.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/parallel.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/table.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/option_parsing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/datatypes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/update_version.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/checkpointing.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/warning.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/recode_alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/organizer.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/terminal.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/misc.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/dict_array.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/modules.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/transform.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/trie.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/util/unit_test.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/sfffile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/app/cmfinder.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/scope.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/setting.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/definition.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/bitvector.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/entity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/moltype.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alphabet.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/genetic_code.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/usage.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/profile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/info.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/genetic_code.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/entity.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/alignment.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/location.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/profile.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/info.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/moltype.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/definition.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/setting.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/scope.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/recalculation/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/UPGMA.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/procrustes.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/approximate_mds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/goodness_of_fit.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/metric_scaling.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/cluster/nmds.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/k_word.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/motif/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/pdb.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/database.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/name.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/host.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/sequence.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/compara.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/assembly.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/species.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/related_region.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/feature_level.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ensembl/genome.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/rfam.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/db/ncbi.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db -creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/manipulation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_asa.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/rna2d.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/knots.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/contact.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/asa.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/dihedral.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/_contact.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/pairs_util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/struct/selection.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/markov.py to markov.pyc +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/annotation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/bitvector.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/core/tree.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pairwise.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/traceback.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_model.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/progressive.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/pycompare.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/indel_positions.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/algorithm.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +creating /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/methods.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/util.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/weights/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/__init__.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_compare.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_pogs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/_pairwise_seqs.so -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/dp_calculation.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +copying /build/python-cogent-1.9/.pybuild/cpython2_2.7_cogent/build/cogent/align/align.py -> /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponential_integration.py to matrix_exponential_integration.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/geometry.py to geometry.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/solve.py to solve.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/svd.py to svd.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py to distance.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py to fast_tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py to fast_unifrac.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py to matrix_exponentiation.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/optimisers.py to optimisers.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimize.py to scipy_optimize.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/period.py to period.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_logarithm.py to matrix_logarithm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py to matrix_exponentiation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/jackknife.py to jackknife.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py to scipy_optimisers.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/svd.py to svd.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/rarefaction.py to rarefaction.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/test.py to test.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py to util.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/special.py to special.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py to period.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/jackknife.py to jackknife.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py to information_criteria.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/alpha_diversity.py to alpha_diversity.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/histogram.py to histogram.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py to kendall.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/distribution.py to distribution.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py to ks.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py to information_criteria.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/rarefaction.py to rarefaction.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py to get_by_cai.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py to adaptor.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py to get_by_cai.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py to ks.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py to period.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/alpha_diversity.py to alpha_diversity.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py to distance_transform.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py to function_optimisation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py to fast_unifrac.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py to fast_tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py to adaptor.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py to kendall.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/markov.py to markov.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py to scipy_optimisers.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py to function_optimisation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimize.py to scipy_optimize.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py to distance.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py to distance_transform.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/fit_function.py to fit_function.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/solve.py to solve.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/simannealingoptimiser.py to simannealingoptimiser.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponential_integration.py to matrix_exponential_integration.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/period.py to period.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/table.py to table.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/phylip.py to phylip.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/stockholm.py to stockholm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/alignment.py to alignment.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/fasta.py to fasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/structure.py to structure.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py to rna_struct.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/nexus.py to nexus.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py to pdb_color.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/clustal.py to clustal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/text_tree.py to text_tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb.py to pdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py to xyzrn.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py to bedgraph.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/motif.py to motif.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/mage.py to mage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py to motif_prob_model.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py to pairwise_distance.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py to discrete_markov.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py to likelihood_function.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/maths/spatial/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/k_word.py to k_word.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/energy_params.py to energy_params.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py to ligand_properties.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py to nucleic_properties.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py to molecular_weight.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py to protein_properties.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py to coevolution.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py to likelihood_calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py to predicate.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py to parameter_controller.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py to likelihood_function.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py to best_likelihood.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py to bootstrap.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/models.py to models.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py to substitution_calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py to likelihood_tree.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py to solved_models.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py to motif_prob_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py to discrete_markov.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py to substitution_calculation.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py to likelihood_tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py to parameter_controller.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py to bootstrap.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/models.py to models.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py to predicate.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py to substitution_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py to likelihood_calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py to pairwise_distance.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py to simulate.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record_finder.py to record_finder.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnashapes.py to rnashapes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/hmmscan.py to hmmscan.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/newick.py to newick.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/table.py to table.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py to knetfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cmfinder.py to cmfinder.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sfold.py to sfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast.py to blast.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/transform.py to transform.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/modules.py to modules.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py to recode_alignment.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/array.py to array.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict_array.py to dict_array.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/progress_display.py to progress_display.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/warning.py to warning.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py to checkpointing.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/terminal.py to terminal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/datatypes.py to datatypes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/unit_test.py to unit_test.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/table.py to table.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/trie.py to trie.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/misc.py to misc.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/parallel.py to parallel.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py to option_parsing.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict2d.py to dict2d.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/organizer.py to organizer.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/update_version.py to update_version.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py to metric_scaling.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py to nmds.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py to procrustes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py to UPGMA.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py to approximate_mds.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py to goodness_of_fit.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py to rna_struct.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/clustal.py to clustal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py to xyzrn.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/fasta.py to fasta.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/structure.py to structure.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/text_tree.py to text_tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/motif.py to motif.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/nexus.py to nexus.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/mage.py to mage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/alignment.py to alignment.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/phylip.py to phylip.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/stockholm.py to stockholm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb.py to pdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/table.py to table.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py to pdb_color.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py to bedgraph.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/rna2d.py to rna2d.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/selection.py to selection.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/dihedral.py to dihedral.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/manipulation.py to manipulation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/asa.py to asa.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/contact.py to contact.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/annotation.py to annotation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/pairs_util.py to pairs_util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/knots.py to knots.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/linear.py to linear.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py to compatibility.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py to arrow_rates.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py to multivariate_plot.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py to dotplot.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py to fancy_arrow.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py to codon_usage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py to dinuc.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py to distribution_plots.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py to rlg2mpl.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py to dendrogram.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/legend.py to legend.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gbseq.py to gbseq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cut.py to cut.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/meme.py to meme.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pfold.py to pfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_parser.py to flowgram_parser.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree_xml.py to tree_xml.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast_xml.py to blast_xml.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unigene.py to unigene.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/comrna.py to comrna.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/clustal.py to clustal.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ebi.py to ebi.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py to aaindex.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/msms.py to msms.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record.py to record.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py to rna_plot.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/carnac.py to carnac.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py to pknotsrg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/psl.py to psl.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py to rna_fold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/phylip.py to phylip.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/locuslink.py to locuslink.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py to greengenes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_fasta.py to kegg_fasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/contrafold.py to contrafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree.py to tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/macsim.py to macsim.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py to rnaview.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gcg.py to gcg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaforester.py to rnaforester.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py to tinyseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py to foldalign.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml.py to paml.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record.py to record.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/msms.py to msms.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/infernal.py to infernal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stockholm.py to stockholm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gff.py to gff.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unigene.py to unigene.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ilm.py to ilm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dialign.py to dialign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/consan.py to consan.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py to tinyseq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaforester.py to rnaforester.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/nupack.py to nupack.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/fasta.py to fasta.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree_xml.py to tree_xml.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/fastq.py to fastq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sequence.py to sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/infernal.py to infernal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/macsim.py to macsim.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py to kegg_ko.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py to foldalign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/structure.py to structure.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/locuslink.py to locuslink.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_collection.py to flowgram_collection.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ncbi_taxonomy.py to ncbi_taxonomy.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ct.py to ct.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rdb.py to rdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/comrna.py to comrna.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/unafold.py to unafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py to dynalign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/structure.py to structure.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/meme.py to meme.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sequence.py to sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast_xml.py to blast_xml.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py to kegg_pos.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stride.py to stride.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cove.py to cove.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py to bowtie.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/hmmscan.py to hmmscan.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/column.py to column.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mfold.py to mfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py to kegg_ko.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_parser.py to flowgram_parser.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mothur.py to mothur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cigar.py to cigar.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cutg.py to cutg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stride.py to stride.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml_matrix.py to paml_matrix.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py to bpseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py to flowgram.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/psl.py to psl.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py to aaindex.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaalifold.py to rnaalifold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py to greengenes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/binary_sff.py to binary_sff.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/nexus.py to nexus.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py to dynalign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/record_finder.py to record_finder.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rdb.py to rdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py to knetfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py to sprinzl.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mfold.py to mfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnashapes.py to rnashapes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mage.py to mage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ilm.py to ilm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sfold.py to sfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/phylip.py to phylip.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/genbank.py to genbank.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaalifold.py to rnaalifold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py to sprinzl.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cove.py to cove.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/clustal.py to clustal.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py to rna_fold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/stockholm.py to stockholm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/fastq.py to fastq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ct.py to ct.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gibbs.py to gibbs.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pfold.py to pfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py to agilent_microarray.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pdb.py to pdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py to bowtie.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dotur.py to dotur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py to rna_plot.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rfam.py to rfam.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gbseq.py to gbseq.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pdb.py to pdb.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_taxonomy.py to kegg_taxonomy.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cut.py to cut.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/blast.py to blast.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/table.py to table.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/paml_matrix.py to paml_matrix.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py to agilent_microarray.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/contrafold.py to contrafold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/dialign.py to dialign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cigar.py to cigar.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gcg.py to gcg.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/gff.py to gff.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_fasta.py to kegg_fasta.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/consan.py to consan.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cutg.py to cutg.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/ncbi_taxonomy.py to ncbi_taxonomy.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py to rnaview.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py to kegg_pos.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py to pknotsrg.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py to flowgram.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/rfam.py to rfam.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/newick.py to newick.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py to bpseq.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/illumina_sequence.py to illumina_sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/binary_sff.py to binary_sff.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/mage.py to mage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/nupack.py to nupack.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py to nucleic_properties.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py to protein_properties.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/energy_params.py to energy_params.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py to molecular_weight.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py to ligand_properties.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py to dp_calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py to pairwise.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py to methods.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/traceback.py to traceback.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py to indel_positions.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py to indel_model.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/align.py to align.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py to pycompare.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py to algorithm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/progressive.py to progressive.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py to distribution_plots.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py to multivariate_plot.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/legend.py to legend.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py to rlg2mpl.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/linear.py to linear.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py to arrow_rates.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py to codon_usage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py to dinuc.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py to dendrogram.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py to dotplot.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py to compatibility.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py to fancy_arrow.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py to analysis.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py to markov.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py to randomization.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py to tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py to sequence_generators.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py to usage.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py to microarray.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py to birth_death.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py to searchpath.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py to microarray_normalize.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/parse/cmfinder.py to cmfinder.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ncbi.py to ncbi.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py to region.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py to database.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py to sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py to feature_level.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py to name.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py to compara.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py to assembly.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py to related_region.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py to genome.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py to species.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py to host.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/pdb.py to pdb.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/rfam.py to rfam.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/maximum_likelihood.py to maximum_likelihood.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py to least_squares.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/nj.py to nj.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py to least_squares.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/distance.py to distance.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/nj.py to nj.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/tree_collection.py to tree_collection.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/tree_space.py to tree_space.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/phylo/consensus.py to consensus.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py to rnashapes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py to analysis.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py to usage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py to sequence_generators.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py to microarray_normalize.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py to searchpath.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py to microarray.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py to randomization.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py to markov.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py to birth_death.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/seqprep.py to seqprep.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pfold.py to pfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py to sffinfo.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/uclust.py to uclust.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml.py to raxml.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/comrna.py to comrna.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle_v38.py to muscle_v38.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cdbfasta.py to cdbfasta.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/msms.py to msms.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/flash.py to flash.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/bwa.py to bwa.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py to rdp_classifier20.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py to cd_hit.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pplacer.py to pplacer.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/knetfold.py to knetfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree.py to fasttree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py to cmfinder.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfold.py to sfold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blast.py to blast.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/carnac.py to carnac.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py to pknotsrg.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fastq_join.py to fastq_join.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py to fasttree_v1.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py to contrafold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py to rdp_classifier.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfffile.py to sfffile.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py to raxml_v730.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaview.py to rnaview.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py to fasttree_v1.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py to rnaforester.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/foldalign.py to foldalign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/msms.py to msms.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/nupack.py to nupack.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml.py to raxml.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/infernal.py to infernal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle_v38.py to muscle_v38.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/ilm.py to ilm.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/bwa.py to bwa.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py to parsinsert.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dialign.py to dialign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/consan.py to consan.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/guppy.py to guppy.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle.py to muscle.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py to rdp_classifier.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/comrna.py to comrna.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blat.py to blat.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py to vienna_package.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py to gctmpca.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/unafold.py to unafold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clearcut.py to clearcut.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/foldalign.py to foldalign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py to parsinsert.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/parameters.py to parameters.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dynalign.py to dynalign.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clustalw.py to clustalw.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mfold.py to mfold.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mafft.py to mafft.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/unafold.py to unafold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/stride.py to stride.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cove.py to cove.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/formatdb.py to formatdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cdbfasta.py to cdbfasta.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mothur.py to mothur.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blat.py to blat.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/stride.py to stride.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py to rnaalifold.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cove.py to cove.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py to rdp_classifier20.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py to cd_hit.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pfold.py to pfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dynalign.py to dynalign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/muscle.py to muscle.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/knetfold.py to knetfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fasttree.py to fasttree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/mfold.py to mfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py to rnashapes.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/ilm.py to ilm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfold.py to sfold.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py to raxml_v730.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dotur.py to dotur.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/blast.py to blast.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clearcut.py to clearcut.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/fastq_join.py to fastq_join.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/usearch.py to usearch.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py to contrafold.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pandaseq.py to pandaseq.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py to sffinfo.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dotur.py to dotur.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/dialign.py to dialign.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/guppy.py to guppy.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/clustalw.py to clustalw.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/consan.py to consan.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rnaview.py to rnaview.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py to pknotsrg.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/rtax.py to rtax.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py to vienna_package.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/flash.py to flash.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/nupack.py to nupack.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/progress_display.py to progress_display.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/parallel.py to parallel.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/table.py to table.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py to option_parsing.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/datatypes.py to datatypes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/array.py to array.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict2d.py to dict2d.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/update_version.py to update_version.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py to checkpointing.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/warning.py to warning.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py to recode_alignment.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/organizer.py to organizer.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/terminal.py to terminal.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/misc.py to misc.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/dict_array.py to dict_array.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/modules.py to modules.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/transform.py to transform.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/trie.py to trie.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/util/unit_test.py to unit_test.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/bitvector.py to bitvector.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/annotation.py to annotation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/entity.py to entity.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/tree.py to tree.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alignment.py to alignment.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/sfffile.py to sfffile.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py to cmfinder.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/scope.py to scope.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/setting.py to setting.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py to calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py to definition.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/moltype.py to moltype.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alphabet.py to alphabet.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py to genetic_code.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/usage.py to usage.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/profile.py to profile.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/sequence.py to sequence.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/info.py to info.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py to genetic_code.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/entity.py to entity.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/alignment.py to alignment.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/__init__.py to __init__.pyc byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/location.py to location.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/profile.py to profile.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/info.py to info.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/moltype.py to moltype.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py to definition.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/setting.py to setting.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/scope.py to scope.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py to calculation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/recalculation/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py to UPGMA.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py to procrustes.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py to approximate_mds.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py to goodness_of_fit.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py to metric_scaling.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py to nmds.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/k_word.py to k_word.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/motif/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/pdb.py to pdb.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py to database.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py to name.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py to region.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py to util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py to host.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py to sequence.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py to compara.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py to assembly.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py to species.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py to related_region.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py to feature_level.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py to genome.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/rfam.py to rfam.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/db/ncbi.py to ncbi.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/annotation.py to annotation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/manipulation.py to manipulation.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/rna2d.py to rna2d.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/knots.py to knots.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/contact.py to contact.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/asa.py to asa.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/dihedral.py to dihedral.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/__init__.py to __init__.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/pairs_util.py to pairs_util.pyc -byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/struct/selection.py to selection.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/annotation.py to annotation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/bitvector.py to bitvector.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/core/tree.py to tree.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py to pairwise.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/traceback.py to traceback.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py to indel_model.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/progressive.py to progressive.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py to pycompare.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py to indel_positions.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py to algorithm.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py to methods.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py to util.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/__init__.py to __init__.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py to dp_calculation.pyc +byte-compiling /build/python-cogent-1.9/debian/python-cogent/usr/lib/python2.7/dist-packages/cogent/align/align.py to align.pyc running install_egg_info running egg_info creating cogent.egg-info @@ -10709,11 +10743,11 @@ I: dh_python2 fs:343: renaming _likelihood_tree.so to _likelihood_tree.arm-linux-gnueabihf.so I: dh_python2 fs:343: renaming _pairwise_distance.so to _pairwise_distance.arm-linux-gnueabihf.so I: dh_python2 fs:343: renaming _solved_models.so to _solved_models.arm-linux-gnueabihf.so +I: dh_python2 fs:343: renaming _asa.so to _asa.arm-linux-gnueabihf.so +I: dh_python2 fs:343: renaming _contact.so to _contact.arm-linux-gnueabihf.so I: dh_python2 fs:343: renaming _compare.so to _compare.arm-linux-gnueabihf.so I: dh_python2 fs:343: renaming _pairwise_pogs.so to _pairwise_pogs.arm-linux-gnueabihf.so I: dh_python2 fs:343: renaming _pairwise_seqs.so to _pairwise_seqs.arm-linux-gnueabihf.so -I: dh_python2 fs:343: renaming _asa.so to _asa.arm-linux-gnueabihf.so -I: dh_python2 fs:343: renaming _contact.so to _contact.arm-linux-gnueabihf.so dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -10733,28 +10767,30 @@ make[1]: Leaving directory '/build/python-cogent-1.9' dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild +dpkg-gencontrol: warning: package python-cogent-doc: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-cogent: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-cogent: substitution variable ${python:Versions} unused, but is defined -dpkg-gencontrol: warning: package python-cogent-doc: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-cogent: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-cogent: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python-cogent-dbgsym' in '../python-cogent-dbgsym_1.9-14_armhf.deb'. dpkg-deb: building package 'python-cogent-doc' in '../python-cogent-doc_1.9-14_all.deb'. dpkg-deb: building package 'python-cogent' in '../python-cogent_1.9-14_armhf.deb'. +dpkg-deb: building package 'python-cogent-dbgsym' in '../python-cogent-dbgsym_1.9-14_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-cogent_1.9-14_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/15525/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/15525/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1494 and its subdirectories -I: Current time: Mon Aug 31 21:12:06 -12 2020 -I: pbuilder-time-stamp: 1598951526 +I: removing directory /srv/workspace/pbuilder/15525 and its subdirectories +I: Current time: Tue Sep 1 23:37:10 +14 2020 +I: pbuilder-time-stamp: 1598953030