Diff of the two buildlogs: -- --- b1/build.log 2020-08-10 14:54:37.730292557 +0000 +++ b2/build.log 2020-08-10 15:01:03.214323839 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 10 02:44:53 -12 2020 -I: pbuilder-time-stamp: 1597070693 +I: Current time: Tue Aug 11 04:54:51 +14 2020 +I: pbuilder-time-stamp: 1597071291 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Fri Jan 4 20:45:30 2019 -12 +gpgv: Signature made Sat Jan 5 22:45:30 2019 +14 gpgv: using RSA key 3F464391498FE874BDB5D98F2124AA1983785C90 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./octave-stk_2.5.1-2.dsc @@ -29,136 +29,170 @@ dpkg-source: info: applying 0003-Mark-expected-failure.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18308/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5012/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5012/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5012/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f50f6a8a2aab45148981b41d4b838550' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18308' - PS1='# ' - PS2='> ' + INVOCATION_ID=09e00b088c424a85952b95c148e91065 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5012 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ffj7iFtxdk/pbuilderrc_waoR --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ffj7iFtxdk/b1 --logfile b1/build.log octave-stk_2.5.1-2.dsc' - SUDO_GID='111' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ffj7iFtxdk/pbuilderrc_1dAx --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ffj7iFtxdk/b2 --logfile b2/build.log octave-stk_2.5.1-2.dsc' + SUDO_GID=116 + SUDO_UID=112 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux ff4a 4.19.0-10-armmp-lpae #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux + Linux i-capture-the-hostname 4.19.0-10-armmp #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 9 20:26 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/18308/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 11 04:55 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 9 22:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/5012/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -547,7 +581,7 @@ Get: 349 http://deb.debian.org/debian buster/main armhf fonts-freefont-otf all 20120503-9 [3169 kB] Get: 350 http://deb.debian.org/debian buster/main armhf dh-octave-autopkgtest all 0.6.2 [8308 B] Get: 351 http://deb.debian.org/debian buster/main armhf dh-octave all 0.6.2 [19.9 kB] -Fetched 111 MB in 51s (2180 kB/s) +Fetched 111 MB in 14s (7748 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -1998,7 +2032,7 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/octave-stk-2.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/octave-stk-2.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package octave-stk dpkg-buildpackage: info: source version 2.5.1-2 dpkg-buildpackage: info: source distribution unstable @@ -2034,15 +2068,15 @@ /usr/bin/mkoctfile --verbose --mex --output __stk_dist_pairwise__.mex stk_dist_pairwise.c /usr/bin/mkoctfile --verbose --mex --output __get_column_number__.mex get_column_number.c /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixy__.mex stk_dist_matrixy.c -/usr/bin/mkoctfile --verbose --mex --output __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_pairwise.c -o stk_dist_pairwise.o +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG get_column_number.c -o get_column_number.o +/usr/bin/mkoctfile --verbose --mex --output __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_matrixy.c -o stk_dist_matrixy.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_filldist_discr_mex.c -o stk_filldist_discr_mex.o -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG get_column_number.c -o get_column_number.o -g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_pairwise__.mex stk_dist_pairwise.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro -g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __get_column_number__.mex get_column_number.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixy__.mex stk_dist_matrixy.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro +g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_pairwise__.mex stk_dist_pairwise.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro +g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __get_column_number__.mex get_column_number.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_matrixy.c -o stk_gpquadform_matrixy.o /usr/bin/mkoctfile --verbose --mex --output __stk_isdominated_mex__.mex stk_isdominated_mex.c @@ -2051,13 +2085,13 @@ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_mindist_mex.c -o stk_mindist_mex.o /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixx__.mex stk_dist_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_matrixx.c -o stk_dist_matrixx.o -g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_mindist_mex__.mex stk_mindist_mex.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro -g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixx__.mex stk_dist_matrixx.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro +g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_mindist_mex__.mex stk_mindist_mex.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_isdominated_mex__.mex stk_isdominated_mex.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro +g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixx__.mex stk_dist_matrixx.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.c -/usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_matrixx.c -o stk_gpquadform_matrixx.o +/usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_pairwise.c -o stk_gpquadform_pairwise.o /usr/bin/mkoctfile --verbose --mex --output __stk_paretofind_mex__.mex stk_paretofind_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_paretofind_mex.c -o stk_paretofind_mex.o @@ -2073,8 +2107,8 @@ gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_distrib_bivnorm0_cdf.c -o stk_distrib_bivnorm0_cdf.o /usr/bin/mkoctfile --verbose --mex --output __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.c wfg.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dominatedhv_mex.c -o stk_dominatedhv_mex.o -g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro +g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG wfg.c -o wfg.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.o wfg.o -L/usr/lib/arm-linux-gnueabihf/octave/4.4.1 -L/usr/lib/arm-linux-gnueabihf -loctinterp -loctave -Wl,-z,relro make[1]: Leaving directory '/build/octave-stk-2.5.1/src' @@ -2083,112 +2117,315 @@ dh_octave_check -O--buildsystem=octave Checking package... Checking m files ... -[inst/core/@stk_kreq_qr/stk_update.m] ->>>>> /build/octave-stk-2.5.1/inst/core/@stk_kreq_qr/stk_update.m -***** shared model, x, y - model = stk_model ('stk_materncov32_iso', 1); - model.param = log ([1.0; 2.8]); - x = [1.2; 0.3; -1.9]; - y = 0.0; +[inst/lm/@stk_lm_cubic/feval.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_cubic/feval.m +***** test + n = 15; d = 4; + x = stk_sampling_randunif (n, d); + P = feval (stk_lm_cubic (), x); + assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])) +1 test, 1 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_cubic/stk_lm_cubic.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_cubic/stk_lm_cubic.m +***** test stk_test_class ('stk_lm_cubic') +***** error lm = stk_lm_cubic (3.33); +2 tests, 2 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_null/stk_lm_null.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_null/stk_lm_null.m +***** test stk_test_class ('stk_lm_null') +***** error lm = stk_lm_null (3.33); +2 tests, 2 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_null/feval.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_null/feval.m +***** test + n = 15; d = 4; + x = stk_sampling_randunif (n, d); + P = feval (stk_lm_null (), x); + assert (isequal (size (P), [n, 0])); +1 test, 1 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_constant/feval.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_constant/feval.m ***** test - kreqA = stk_kreq_qr (model, x); - [Kii, Pi] = stk_make_matcov (model, x); - kreqB = stk_kreq_qr (model, x(1)); - kreqB = stk_update (kreqB, Kii(2, 2), Kii(2, 1), Pi(2)); - kreqB = stk_update (kreqB, Kii(3, 3), Kii(3, [1 2]), Pi(3)); - assert (stk_isequal_tolabs (kreqA, kreqB, 3 * eps)) + n = 15; d = 4; + x = stk_sampling_randunif (n, d); + P = feval (stk_lm_constant (), x); + assert (isequal (size (P), [n, 1])); +1 test, 1 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_constant/stk_lm_constant.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_constant/stk_lm_constant.m +***** test stk_test_class ('stk_lm_constant') +***** error lm = stk_lm_constant (3.33); +2 tests, 2 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_quadratic/feval.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_quadratic/feval.m ***** test - kreqA = stk_kreq_qr (model, x, y); - [Kii, Pi] = stk_make_matcov (model, x); - [Kti, Pt] = stk_make_matcov (model, y, x); - kreqB = stk_kreq_qr (model, x(1), y); - kreqB = stk_update (kreqB, Kii(2, 2), Kii(2, 1), Pi(2), Kti(2)); - kreqB = stk_update (kreqB, Kii(3, 3), Kii(3, [1 2]), Pi(3), Kti(3)); - assert (stk_isequal_tolabs (kreqA, kreqB, 3 * eps)) + n = 15; d = 4; + x = stk_sampling_randunif (n, d); + P = feval (stk_lm_quadratic (), x); + assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); +1 test, 1 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m +***** test stk_test_class ('stk_lm_quadratic') +***** error lm = stk_lm_quadratic (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped -[inst/core/@stk_kreq_qr/stk_kreq_qr.m] ->>>>> /build/octave-stk-2.5.1/inst/core/@stk_kreq_qr/stk_kreq_qr.m -***** test stk_test_class ('stk_kreq_qr') +[inst/lm/@stk_lm_affine/feval.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_affine/feval.m +***** test + n = 15; d = 4; + x = stk_sampling_randunif (n, d); + P = feval (stk_lm_affine (), x); + assert (isequal (size (P), [n, d + 1])); 1 test, 1 passed, 0 known failure, 0 skipped -[inst/core/stk_predict_leaveoneout.m] ->>>>> /build/octave-stk-2.5.1/inst/core/stk_predict_leaveoneout.m -***** shared n, x_obs, z_obs, model - n = 20; - x_obs = stk_sampling_regulargrid (n, 1, [0; 2*pi]); +[inst/lm/@stk_lm_affine/stk_lm_affine.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_affine/stk_lm_affine.m +***** test stk_test_class ('stk_lm_affine') +***** error lm = stk_lm_affine (3.33); +2 tests, 2 passed, 0 known failure, 0 skipped +[inst/lm/stk_lm_polynomial.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/stk_lm_polynomial.m +***** error lm = stk_lm_polynomial (); +***** error lm = stk_lm_polynomial (0, 3.33); +***** test + lm = stk_lm_polynomial (-1); + assert (isa (lm, 'stk_lm_null')); +***** test + lm = stk_lm_polynomial (0); + assert (isa (lm, 'stk_lm_constant')); +***** test + lm = stk_lm_polynomial (1); + assert (isa (lm, 'stk_lm_affine')); +***** test + lm = stk_lm_polynomial (2); + assert (isa (lm, 'stk_lm_quadratic')); +***** test + lm = stk_lm_polynomial (3); + assert (isa (lm, 'stk_lm_cubic')); +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/lm/@stk_lm_matrix/stk_lm_matrix.m] +>>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_matrix/stk_lm_matrix.m +***** test stk_test_class ('stk_lm_matrix') +***** error lm = stk_lm_matrix ([], 3.33); +***** test %%% dim 1 + data = rand (10, 1); idx = 3:7; + lm = stk_lm_matrix (data); + assert (isa (lm, 'stk_lm_matrix')); + assert (isequal (data(idx, :), feval (lm, idx))); +***** test %%% dim 3 + data = rand (10, 3); idx = 3:7; + lm = stk_lm_matrix (data); + assert (isa (lm, 'stk_lm_matrix')); + assert (isequal (data(idx, :), feval (lm, idx))); +4 tests, 4 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/set.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/set.m +***** shared M_post + x_obs = (linspace (0, pi, 15))'; + z_obs = sin (x_obs); + M_prior = stk_model ('stk_materncov32_iso'); + M_prior.param = log ([1.0; 2.1]); + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); +***** error value = get (M_post, 1.33); +***** error value = get (M_post, 'dudule'); +***** test value = get (M_post, 'prior_model'); +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/stk_model_gpposterior.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_model_gpposterior.m +***** test stk_test_class ('stk_model_gpposterior') +***** shared M_prior, x_obs, z_obs + x_obs = (linspace (0, pi, 15))'; + z_obs = sin (x_obs); + + M_prior = stk_model ('stk_materncov32_iso'); + M_prior.param = log ([1.0; 2.1]); +***** test M_post = stk_model_gpposterior (); +***** test M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); +***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs]); +***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs], 3.441); +***** test % hidden feature + kreq = stk_kreq_qr (M_prior, x_obs); + M_post = stk_model_gpposterior (M_prior, {x_obs, kreq}, z_obs); +***** test % NaNs in prior_model.param + DIM = 1; M = stk_model (@stk_materncov52_aniso, DIM); + M.param = nan (2, 1); % this is currently the default + x = stk_sampling_regulargrid (20, DIM, [0; 1]); + y = sin (double (x)); + zp = stk_predict (M, x, y, x); +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/subsref.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/subsref.m +***** shared M_post, n + n = 15; + x_obs = (linspace (0, pi, n))'; + z_obs = sin (x_obs); + + M_prior = stk_model ('stk_materncov32_iso'); + M_prior.param = log ([1.0; 2.1]); + + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); +***** assert (isstruct (M_post.prior_model)); +***** assert (isequal (size (M_post.input_data), [n 1])); +***** assert (isequal (size (M_post.output_data), [n 1])); +***** assert (isa (M_post.kreq, 'stk_kreq_qr')); +***** error M_post(1); +***** error M_post{1}; +6 tests, 6 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/get.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/get.m +***** shared M_post + x_obs = (linspace (0, pi, 15))'; + z_obs = sin (x_obs); + M_prior = stk_model ('stk_materncov32_iso'); + M_prior.param = log ([1.0; 2.1]); + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); +***** error value = get (M_post, 1.33); +***** error value = get (M_post, 'dudule'); +***** test value = get (M_post, 'prior_model'); +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/stk_predict_leaveoneout.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_predict_leaveoneout.m +***** test % Check virtual Leave-One-Out formula + + n = 20; d = 1; + x_obs = stk_sampling_regulargrid (n, d, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); - model = stk_model ('stk_materncov32_iso'); - model.param = log ([1; 5]); -***** test % one output + + lm_list = {stk_lm_null, stk_lm_constant, stk_lm_affine}; + + for j = 0:2 + for k = 1:(length (lm_list)) + + model = stk_model ('stk_materncov32_iso', d); + model.lm = lm_list{k}; + model.param = log ([1; 5]); + + switch j % test various scenarios for lognoisevariance + case 0 + model.lognoisevariance = -inf; + case 1 + model.lognoisevariance = 0; + case 2 + model.lognoisevariance = (1 + rand (n, 1)) * 1e-3; + end + + M_post = stk_model_gpposterior (model, x_obs, z_obs); + + [loo_pred, loo_res] = stk_predict_leaveoneout (M_post); + [direct_pred, direct_res] = stk_predict_leaveoneout_direct (M_post); + + assert (stk_isequal_tolrel (loo_pred, direct_pred)); + assert (stk_isequal_tolrel (loo_res, direct_res)); + + end + end +1 test, 1 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/stk_model_update.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_model_update.m +***** shared x_obs, z_obs, ref, M_prior, x_new, z_new, lnv_new + [x_obs, z_obs, ref] = stk_dataset_twobumps ('noisy2'); + M_prior = stk_model ('stk_materncov52_iso'); + M_prior.param = [-0.15; 0.38]; + M_prior.lognoisevariance = 2 * log (ref.noise_std); + x_new = [-0.79; -0.79]; + z_new = [-0.69; -0.85]; + lnv_new = ref.noise_std_func (x_new); +***** test % heteroscedastic + M_prior.lognoisevariance = 2 * log (ref.noise_std); + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); + M_post = stk_model_update (M_post, x_new, z_new, lnv_new); +***** error % using lnv_new / homoscedastic + M_prior.lognoisevariance = 0; + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); + M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK +***** error % using lnv_new / noiseless + M_prior.lognoisevariance = -inf; + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs) + M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK - loo_pred = stk_predict_leaveoneout (model, x_obs, z_obs); +M_post = +| +| prior_model: <1x1 struct array> +| input_data: <80x1 stk_dataframe array> +| output_data: <80x1 stk_dataframe array> +| - assert (isequal (size (loo_pred), [n 2])); - assert (isequal (loo_pred.colnames, {'mean', 'var'})); - assert (all (isfinite (loo_pred(:)))); -***** test % two outputs +with .prior_model = - [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); + scalar structure containing the fields: - assert (isequal (size (loo_pred), [n 2])); - assert (isequal (loo_pred.colnames, {'mean', 'var'})); - assert (all (isfinite (loo_pred(:)))); + covariance_type = @stk_materncov52_iso + lm = - assert (isequal (size (loo_res), [n 2])); - assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); - assert (all (isfinite (loo_res(:)))); -***** test % heteroscedastic noise case + - model.lognoisevariance = (1 + rand (n, 1)) * 1e-6; - [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); + dim = 1 + param = - assert (isequal (size (loo_pred), [n 2])); - assert (isequal (loo_pred.colnames, {'mean', 'var'})); - assert (all (isfinite (loo_pred(:)))); + -0.15000 + 0.38000 - assert (isequal (size (loo_res), [n 2])); - assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); - assert (all (isfinite (loo_res(:)))); -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/core/stk_model.m] ->>>>> /build/octave-stk-2.5.1/inst/core/stk_model.m -***** test model = stk_model(); -***** test model = stk_model('stk_expcov_iso'); -***** test model = stk_model('stk_expcov_iso', 1); -***** test model = stk_model('stk_expcov_iso', 3); -***** test model = stk_model('stk_expcov_aniso'); -***** test model = stk_model('stk_expcov_aniso', 1); -***** test model = stk_model('stk_expcov_aniso', 3); -***** test model = stk_model('stk_materncov_iso'); -***** test model = stk_model('stk_materncov_iso', 1); -***** test model = stk_model('stk_materncov_iso', 3); -***** test model = stk_model('stk_materncov_aniso'); -***** test model = stk_model('stk_materncov_aniso', 1); -***** test model = stk_model('stk_materncov_aniso', 3); -***** test model = stk_model('stk_materncov32_iso'); -***** test model = stk_model('stk_materncov32_iso', 1); -***** test model = stk_model('stk_materncov32_iso', 3); -***** test model = stk_model('stk_materncov32_aniso'); -***** test model = stk_model('stk_materncov32_aniso', 1); -***** test model = stk_model('stk_materncov32_aniso', 3); -***** test model = stk_model('stk_materncov52_iso'); -***** test model = stk_model('stk_materncov52_iso', 1); -***** test model = stk_model('stk_materncov52_iso', 3); -***** test model = stk_model('stk_materncov52_aniso'); -***** test model = stk_model('stk_materncov52_aniso', 1); -***** test model = stk_model('stk_materncov52_aniso', 3); -***** test model = stk_model('stk_gausscov_iso'); -***** test model = stk_model('stk_gausscov_iso', 1); -***** test model = stk_model('stk_gausscov_iso', 3); -***** test model = stk_model('stk_gausscov_aniso'); -***** test model = stk_model('stk_gausscov_aniso', 1); -***** test model = stk_model('stk_gausscov_aniso', 3); -***** test model = stk_model('stk_sphcov_iso'); -***** test model = stk_model('stk_sphcov_iso', 1); -***** test model = stk_model('stk_sphcov_iso', 3); -***** test model = stk_model('stk_sphcov_aniso'); -***** test model = stk_model('stk_sphcov_aniso', 1); -***** test model = stk_model('stk_sphcov_aniso', 3); -37 tests, 37 passed, 0 known failure, 0 skipped + lognoisevariance = -Inf +***** error % not using lnv_new / heteroscedastic + M_prior.lognoisevariance = 2 * log (ref.noise_std); + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); + M_post = stk_model_update (M_post, x_new, z_new); +4 tests, 4 passed, 0 known failure, 0 skipped +[inst/core/@stk_model_gpposterior/stk_predict.m] +>>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_predict.m +***** shared n, m, M_post, M_prior, x0, x_obs, z_obs, x_prd, y_prd, idx_obs, idx_prd + + n = 10; % number of observations + m = n + 1; % number of predictions + d = 1; % dimension of the input space + + x0 = (linspace (0, pi, n + m))'; + + idx_obs = (2:2:(n+m-1))'; + idx_prd = (1:2:(n+m))'; + + x_obs = x0(idx_obs); + z_obs = sin (x_obs); + x_prd = x0(idx_prd); + + M_prior = stk_model ('stk_materncov32_iso'); + M_prior.param = log ([1.0; 2.1]); + + M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); +***** error y_prd = stk_predict (M_post); +***** test y_prd = stk_predict (M_post, x_prd); +***** error y_prd = stk_predict (M_post, [x_prd x_prd]); +***** error y_prd = stk_predict (M_post, x_prd, 0); +***** test % nargout = 2 + [y_prd1, lambda] = stk_predict (M_post, x_prd); + assert (stk_isequal_tolrel (y_prd, y_prd1)); + assert (isequal (size (lambda), [n m])); +***** test % nargout = 3 + [y_prd1, lambda, mu] = stk_predict (M_post, x_prd); + assert (stk_isequal_tolrel (y_prd, y_prd1)); + assert (isequal (size (lambda), [n m])); + assert (isequal (size (mu), [1 m])); % ordinary kriging +***** test % nargout = 4 + [y_prd1, lambda, mu, K] = stk_predict (M_post, x_prd); + assert (stk_isequal_tolrel (y_prd, y_prd1)); + assert (isequal (size (lambda), [n m])); + assert (isequal (size (mu), [1 m])); % ordinary kriging + assert (isequal (size (K), [m m])); +***** test % nargout = 2, compute only variances + M_post1 = stk_model_gpposterior (M_prior, x_obs, []); + [y_prd_nan, lambda] = stk_predict (M_post1, x_prd); + assert (isequal (size (lambda), [n m])); + assert (all (isnan (y_prd_nan.mean))); +***** test % discrete model (prediction indices provided) + M_prior1 = stk_model ('stk_discretecov', M_prior, x0); + M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); + y_prd1 = stk_predict (M_post1, idx_prd); + assert (stk_isequal_tolrel (y_prd, y_prd1)); +***** test % discrete model (prediction indices *not* provided) + M_prior1 = stk_model ('stk_discretecov', M_prior, x0); + M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); + y_prd1 = stk_predict (M_post1, []); % predict them all! + assert (stk_isequal_tolrel (y_prd, y_prd1(idx_prd, :))); +10 tests, 10 passed, 0 known failure, 0 skipped [inst/core/stk_make_matcov.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_make_matcov.m ***** shared model, model2, x0, x1, n0, n1, d, Ka, Kb, Kc, Pa, Pb, Pc @@ -2207,7 +2444,7 @@ ***** error [KK, PP] = stk_make_matcov (model, x0, x1, pi); terminate called after throwing an instance of 'octave::execution_exception' fatal: caught signal Aborted -- stopping myself... -Aborted +/usr/bin/dh_octave_check: line 236: 22025 Aborted octave-cli --no-history --silent --no-init-file --no-window-system /tmp/fileVYVztU Summary: 0 tests, 0 passed, 0 known failures, 0 skipped dh_octave_substvar -O--buildsystem=octave dh_installdocs -O--buildsystem=octave @@ -2226,29 +2463,31 @@ dh_strip -O--buildsystem=octave dh_makeshlibs -O--buildsystem=octave dh_shlibdeps -O--buildsystem=octave -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex were not linked against libstdc++.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex were not linked against libgomp.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex were not linked against libpthread.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex were not linked against liboctave.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex were not linked against liboctave.so.6 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex were not linked against libgomp.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex were not linked against libpthread.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/arm-linux-gnueabihf/octave/packages/stk-2.5.1/arm-unknown-linux-gnueabihf-api-v52/__stk_gpquadform_matrixy__.mex were not linked against libstdc++.so.6 (they use none of the library's symbols) dh_installdeb -O--buildsystem=octave dh_gencontrol -O--buildsystem=octave dpkg-gencontrol: warning: package octave-stk: substitution variable ${octave:Upstream-Description} unused, but is defined dh_md5sums -O--buildsystem=octave dh_builddeb -O--buildsystem=octave -dpkg-deb: building package 'octave-stk-dbgsym' in '../octave-stk-dbgsym_2.5.1-2_armhf.deb'. dpkg-deb: building package 'octave-stk' in '../octave-stk_2.5.1-2_armhf.deb'. +dpkg-deb: building package 'octave-stk-dbgsym' in '../octave-stk-dbgsym_2.5.1-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../octave-stk_2.5.1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/5012/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5012/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18308 and its subdirectories -I: Current time: Mon Aug 10 02:54:32 -12 2020 -I: pbuilder-time-stamp: 1597071272 +I: removing directory /srv/workspace/pbuilder/5012 and its subdirectories +I: Current time: Tue Aug 11 05:00:58 +14 2020 +I: pbuilder-time-stamp: 1597071658