Diff of the two buildlogs: -- --- b1/build.log 2020-05-19 08:14:48.704725415 +0000 +++ b2/build.log 2020-05-19 08:27:54.161462697 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 18 20:02:20 -12 2020 -I: pbuilder-time-stamp: 1589875340 +I: Current time: Tue May 19 22:15:02 +14 2020 +I: pbuilder-time-stamp: 1589876102 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jan 17 03:02:25 2019 -12 +gpgv: Signature made Fri Jan 18 05:02:25 2019 +14 gpgv: using RSA key 3F464391498FE874BDB5D98F2124AA1983785C90 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./octave-bim_1.1.5-6.dsc @@ -30,6 +30,170 @@ dpkg-source: info: applying xtest-in-bim1c_norm.patch I: Not using root during the build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/4134/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4134/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4134/tmp/hooks/D02_print_environment starting +I: set + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf + IFS=' + ' + INVOCATION_ID=29a494289d9245a0886449f6992f597e + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4134 + PS4='+ ' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.IVyrgJpkBl/pbuilderrc_Gnva --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.IVyrgJpkBl/b2 --logfile b2/build.log octave-bim_1.1.5-6.dsc' + SUDO_GID=116 + SUDO_UID=112 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ +I: uname -a + Linux i-capture-the-hostname 4.19.0-9-armmp #1 SMP Debian 4.19.118-2 (2020-04-29) armv7l GNU/Linux +I: ls -l /bin + total 3328 + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 May 19 22:17 sh -> bash + lrwxrwxrwx 1 root root 4 May 17 22:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/4134/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -469,7 +633,7 @@ Get: 396 http://deb.debian.org/debian buster/main armhf gmsh armhf 4.1.5+really4.1.3+ds1-1 [207 kB] Get: 397 http://deb.debian.org/debian buster/main armhf octave-splines all 1.3.2-6 [21.7 kB] Get: 398 http://deb.debian.org/debian buster/main armhf octave-msh armhf 1.0.10-7 [31.5 kB] -Fetched 143 MB in 28s (5191 kB/s) +Fetched 143 MB in 19s (7632 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -2112,7 +2276,7 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/octave-bim-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/octave-bim-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package octave-bim dpkg-buildpackage: info: source version 1.1.5-6 dpkg-buildpackage: info: source distribution unstable @@ -2146,6 +2310,213 @@ dh_octave_check -O--buildsystem=octave Checking package... Checking m files ... +[inst/bim3a_reaction.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3a_reaction.m +***** shared mesh,delta,zeta,nnodes,nelem +***** test +***** test +***** test +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/bim2a_reaction.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_reaction.m +***** shared mesh,delta,zeta,nnodes,nelem +***** test +***** test +***** test +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/bim2a_advection_diffusion.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_advection_diffusion.m +***** test + [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = ones(Nelements,1); + eta = .1*ones(Nnodes,1); + beta = [ones(1,Nelements);zeros(1,Nelements)]; + gamma = ones(Nnodes,1); + f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x - (exp(10*x)-1)/(exp(10)-1); + assert(u,uex,1e-7) +***** test + [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = ones(Nelements,1); + eta = .1*ones(Nnodes,1); + beta = x; + gamma = ones(Nnodes,1); + f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x - (exp(10*x)-1)/(exp(10)-1); + assert(u,uex,1e-7) +***** test + [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = 10*ones(Nelements,1); + eta = .01*ones(Nnodes,1); + beta = x/10; + gamma = ones(Nnodes,1); + f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x - (exp(10*x)-1)/(exp(10)-1); + assert(u,uex,1e-7) +***** test + [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = 10*ones(Nelements,1); eta = .001*ones(Nnodes,1); + beta = x/100; + gamma = 10*ones(Nnodes,1); + f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x - (exp(10*x)-1)/(exp(10)-1); + assert(u,uex,1e-7) +***** test + [mesh] = msh2m_structured_mesh([0:1/1e3:1],[0:1/2:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = 3*ones(Nelements,1); eta = x+1; + beta = [ones(1,Nelements);zeros(1,Nelements)]; + gamma = 2*x; + ff = 2*(6*x.^2+6*x) - (6*x+6).*(1-2*x)+6*(x-x.^2); + f = bim2a_rhs(mesh,ones(Nelements,1),ff); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x - x.^2; + assert(u,uex,5e-3) +***** test + [mesh] = msh2m_structured_mesh([0:1/1e3:1],[0:1/2:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = ones(Nelements,1); eta = ones(Nnodes,1); + beta = 0; + gamma = x+1; + ff = 4*x+1; + f = bim2a_rhs(mesh,ones(Nelements,1),ff); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x - x.^2; + assert(u,uex,1e-7) +***** test + [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)';y = mesh.p(2,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + alpha = ones(Nelements,1); diff = 1e-2; eta=diff*ones(Nnodes,1); + beta =[ones(1,Nelements);ones(1,Nelements)]; + gamma = x*0+1; + ux = y.*(1-exp((y-1)/diff)) .* (1-exp((x-1)/diff)-x.*exp((x-1)/diff)/diff); + uy = x.*(1-exp((x-1)/diff)) .* (1-exp((y-1)/diff)-y.*exp((y-1)/diff)/diff); + uxx = y.*(1-exp((y-1)/diff)) .* (-2*exp((x-1)/diff)/diff-x.*exp((x-1)/diff)/(diff^2)); + uyy = x.*(1-exp((x-1)/diff)) .* (-2*exp((y-1)/diff)/diff-y.*exp((y-1)/diff)/(diff^2)); + ff = -diff*(uxx+uyy)+ux+uy; + f = bim2a_rhs(mesh,ones(Nelements,1),ff); + S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); + u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); + uex = x.*y.*(1-exp((x-1)/diff)).*(1-exp((y-1)/diff)); + assert(u,uex,1e-7) +***** test + [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; y = mesh.p(2,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + alpha = ones(Nelements,1); eta=ones(Nnodes,1); + beta = 0; + gamma = ones(Nnodes,1); + A = bim2a_advection_diffusion(mesh,1,1,1,0); + B = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + assert(A,B) +8 tests, 8 passed, 0 known failure, 0 skipped +[inst/bim1c_elem_to_nodes.m] +>>>>> /build/octave-bim-1.1.5/inst/bim1c_elem_to_nodes.m +***** test + n = 10; msh = linspace (0, 1, n+1); + nel = n; + nnod = n+1; + u_el = randn (nel, 1); + un1 = bim1c_elem_to_nodes (msh, u_el); + [un2, m] = bim1c_elem_to_nodes (msh, u_el); + un3 = bim1c_elem_to_nodes (m, u_el); + [un4, m] = bim1c_elem_to_nodes (m, u_el); + assert (un1, un2, 1e-10) + assert (un1, un3, 1e-10) + assert (un1, un4, 1e-10) +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim2c_intrp.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2c_intrp.m +***** test + msh = bim2c_mesh_properties (msh2m_structured_mesh (linspace (0, 1, 11), linspace (0, 1, 13), 1, 1:4)); + x = y = linspace (0, 1, 100).'; + u = msh.p(1, :).'; + ui = bim2c_intrp (msh, u, [], [x, y]); + assert (ui, linspace (0, 1, 100), 10*eps); +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim1a_axisymmetric_advection_upwind.m] +>>>>> /build/octave-bim-1.1.5/inst/bim1a_axisymmetric_advection_upwind.m +***** test + nn = 20; + mesh = linspace(1,2,nn+1)'; + D = 1; v = 0; sigma = 0; + uex = @(r) exp(r); + duexdr = @(r) uex(r); + d2uexdr2 = @(r) uex(r); + f = @(r,z) -D./r.*duexdr(r) - D.*d2uexdr2(r) ... + + v./r .* uex(r) + v * duexdr(r) ... + + sigma * uex(r); + uex_left = uex(mesh(1)); uex_right = uex(mesh(end)); + Ar = bim1a_axisymmetric_laplacian (mesh, D, 1); + Adv = bim1a_axisymmetric_advection_upwind (mesh, v*ones(nn,1)); + R = bim1a_axisymmetric_reaction (mesh, sigma, 1); + M = Ar + Adv + R; + M(1,:) *= 0; M(1,1) = 1; + M(end,:) *= 0; M(end, end) = 1; + rhs = bim1a_axisymmetric_rhs (mesh, 1, f(mesh)); + rhs(1) = uex_left; rhs(end) = uex_right; + uh = M \ rhs; + assert(uh, uex(mesh), 1e-3); +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim2c_mesh_properties.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2c_mesh_properties.m +***** shared mesh +***** test +***** test +***** test +3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_rhs.m] >>>>> /build/octave-bim-1.1.5/inst/bim1a_axisymmetric_rhs.m ***** test @@ -2156,6 +2527,107 @@ B = bim1a_axisymmetric_rhs(x,delta,zeta); assert(A,B) 1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim2a_axisymmetric_rhs.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_rhs.m +***** shared mesh,f,g,nnodes,nelem +***** test +***** test +***** test +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/bim1a_rhs.m] +>>>>> /build/octave-bim-1.1.5/inst/bim1a_rhs.m +***** test + x = linspace(0,1,101); + A = bim1a_rhs(x,1,1); + delta = ones(100,1); + zeta = ones(101,1); + B = bim1a_rhs(x,delta,zeta); + assert(A,B) +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim2a_axisymmetric_boundary_mass.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_boundary_mass.m +***** test + n = 3; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) 0*uex(r,z); + d2uexdz2 = @(r,z) 0*uex(r,z); + Rnodesr = bim2c_unknowns_on_side(mesh,[2]); + Rnodesl = bim2c_unknowns_on_side(mesh,[4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + D = 1; vr = 1; vz = 0; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + vr./r .* uex(r,z) + vr * duexdr(r,z) ... + - D.*d2uexdz2(r,z) + vz * duexdz(r,z); + gr = @(r,z) uex(r,z) - 1 * (-D*duexdr(r,z) + vr*uex(r,z)); + gl = @(r,z) uex(r,z) - (-1) * (-D*duexdr(r,z) + vr*uex(r,z)); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + Mr = bim2a_axisymmetric_boundary_mass(mesh,2); Ml = bim2a_axisymmetric_boundary_mass(mesh,4); + S(Rnodesr,Rnodesr) += Mr; + rhs(Rnodesr) += diag(Mr) .* gr(mesh.p(1,Rnodesr), mesh.p(2,Rnodesr))'; + S(Rnodesl,Rnodesl) += Ml; + rhs(Rnodesl) += diag(Ml) .* gl(mesh.p(1,Rnodesl), mesh.p(2,Rnodesl))'; + u = S\rhs; + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) +***** test + n = 10; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) 0*uex(r,z); + d2uexdz2 = @(r,z) 0*uex(r,z); + Rnodesr = bim2c_unknowns_on_side(mesh,[2]); + Rnodesl = bim2c_unknowns_on_side(mesh,[4]); + Rnodesb = bim2c_unknowns_on_side(mesh,[1]); + Rnodest = bim2c_unknowns_on_side(mesh,[3]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + D = 1; vr = 1; vz = 0; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + vr./r .* uex(r,z) + vr * duexdr(r,z) ... + - D.*d2uexdz2(r,z) + vz * duexdz(r,z); + gr = @(r,z) uex(r,z) - 1 * (-D*duexdr(r,z) + vr*uex(r,z)); + gl = @(r,z) uex(r,z) - (-1) * (-D*duexdr(r,z) + vr*uex(r,z)); + gb = @(r,z) uex(r,z) - (-1) * (-D*duexdz(r,z) + vz*uex(r,z)); + gt = @(r,z) uex(r,z) - 1 * (-D*duexdz(r,z) + vz*uex(r,z)); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + Mr = bim2a_axisymmetric_boundary_mass(mesh,2); Ml = bim2a_axisymmetric_boundary_mass(mesh,4); + Mb = bim2a_axisymmetric_boundary_mass(mesh,1); Mt = bim2a_axisymmetric_boundary_mass(mesh,3); + S(Rnodesr,Rnodesr) += Mr; + rhs(Rnodesr) += diag(Mr) .* gr(mesh.p(1,Rnodesr), mesh.p(2,Rnodesr))'; + S(Rnodesl,Rnodesl) += Ml; + rhs(Rnodesl) += diag(Ml) .* gl(mesh.p(1,Rnodesl), mesh.p(2,Rnodesl))'; + S(Rnodesb,Rnodesb) += Mb; + rhs(Rnodesb) += diag(Mb) .* gb(mesh.p(1,Rnodesb), mesh.p(2,Rnodesb))'; + S(Rnodest,Rnodest) += Mt; + rhs(Rnodest) += diag(Mt) .* gt(mesh.p(1,Rnodest), mesh.p(2,Rnodest))'; + u = S\rhs; + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) +2 tests, 2 passed, 0 known failure, 0 skipped +[inst/bim3c_mesh_properties.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3c_mesh_properties.m +***** shared mesh +***** test +***** test +***** test +***** test +4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_advection_diffusion.m] >>>>> /build/octave-bim-1.1.5/inst/bim1a_axisymmetric_advection_diffusion.m ***** test @@ -2223,237 +2695,16 @@ B = bim1a_axisymmetric_advection_diffusion(x,alpha,gamma,eta,0); assert(A,B) 4 tests, 4 passed, 0 known failure, 0 skipped -[inst/bim2a_axisymmetric_advection_diffusion.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_advection_diffusion.m -***** test - n = 3; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) 0*uex(r,z); - d2uexdz2 = @(r,z) 0*uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; vr = 1; vz = 0; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - - D.*d2uexdz2(r,z) + vz * duexdz(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) -***** test - n = 20; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r) .* exp(1-z); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) -uex(r,z); - d2uexdz2 = @(r,z) uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; vr = 1; vz = 1; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - - D.*d2uexdz2(r,z) + vz * duexdz(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) -***** test - n = 10; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r) .* exp(1-z); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) -uex(r,z); - d2uexdz2 = @(r,z) uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D * mesh.p(1,:)'; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + 1./r .* uex(r,z) + duexdr(r,z) ... - - D.*d2uexdz2(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) -***** test - n = 10; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r) .* exp(1-z); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) -uex(r,z); - d2uexdz2 = @(r,z) uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D * 1/2*(mesh.p(1,:)').^2; - f = @(r,z) 1./r.*(1+r).*(r-D) .* uex(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) -***** test - n = 3; - [mesh] = msh2m_structured_mesh(linspace(-2,-1,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) 0*uex(r,z); - d2uexdz2 = @(r,z) 0*uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; vr = 1; vz = 0; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - - D.*d2uexdz2(r,z) + vz * duexdz(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(abs(mesh.p(1,:)), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); u(Dnodes) = uex(abs(mesh.p(1,Dnodes)), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(abs(mesh.p(1,:)), mesh.p(2,:))',1e-7) -***** test - n = 10; - [mesh] = msh2m_structured_mesh(linspace(-2,-1,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r) .* exp(1-z); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) -uex(r,z); - d2uexdz2 = @(r,z) uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D * 1/2*(mesh.p(1,:)').^2; - f = @(r,z) 1./r.*(1+r).*(r-D) .* uex(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(abs(mesh.p(1,:)), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); u(Dnodes) = uex(abs(mesh.p(1,Dnodes)), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(abs(mesh.p(1,:)), mesh.p(2,:))',1e-3) -***** test - [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; y = mesh.p(2,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - alpha = ones(Nelements,1); eta=ones(Nnodes,1); - beta = 0; - gamma = ones(Nnodes,1); - A = bim2a_axisymmetric_advection_diffusion(mesh,1,1,1,0); - B = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - assert(A,B) -7 tests, 7 passed, 0 known failure, 0 skipped -[inst/bim1a_reaction.m] ->>>>> /build/octave-bim-1.1.5/inst/bim1a_reaction.m -***** test - x = linspace(0,1,101); - A = bim1a_reaction(x,1,1); - delta = ones(100,1); - zeta = ones(101,1); - B = bim1a_reaction(x,delta,zeta); - assert(A,B) -1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim3c_unknowns_on_faces.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3c_unknowns_on_faces.m -***** shared mesh -***** test -***** test -***** test -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim3a_reaction.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3a_reaction.m -***** shared mesh,delta,zeta,nnodes,nelem -***** test -***** test -***** test -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim1c_norm.m] ->>>>> /build/octave-bim-1.1.5/inst/bim1c_norm.m -***** xtest -***** shared L, V, m - L = rand (1); V = rand (1); m = linspace (0,1,5).^2; m *= L; - u = V * ones (size (m))'; - uinf = bim1c_norm (m, u, 'inf'); - uL2 = bim1c_norm (m, u, 'L2'); - uH1 = bim1c_norm (m, u, 'H1'); - assert ([uinf, uL2, uH1], [V, V*sqrt(L), V*sqrt(L)], 1e-12); -***** test - u = V * m'; - uinf = bim1c_norm (m, u, 'inf'); - uL2 = bim1c_norm (m, u, 'L2'); - uH1 = bim1c_norm (m, u, 'H1'); - assert ([uinf, uL2, uH1], - [L*V, V*sqrt(L^3/3), V*sqrt(L^3/3 + L)], - 1e-12); -***** test - u = V * ones (size (diff (m)))'; - uinf = bim1c_norm (m, u, 'inf'); - uL2 = bim1c_norm (m, u, 'L2'); - assert ([uinf, uL2], [V, V*sqrt(L)], 1e-12); -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim2c_intrp.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2c_intrp.m +[inst/bim3c_global_flux.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3c_global_flux.m ***** test - msh = bim2c_mesh_properties (msh2m_structured_mesh (linspace (0, 1, 11), linspace (0, 1, 13), 1, 1:4)); - x = y = linspace (0, 1, 100).'; - u = msh.p(1, :).'; - ui = bim2c_intrp (msh, u, [], [x, y]); - assert (ui, linspace (0, 1, 100), 10*eps); + N = 10; pp = linspace (0, 1, N); msh = bim3c_mesh_properties (msh3m_structured_mesh (pp, pp, pp, 1, 1:6)); + u = ones (N^3, 1); + v = ones (N^3, 1); + alpha = ones (columns (msh.t), 1); + F = bim3c_global_flux (msh, u, alpha, v); + assert (norm (F(:), inf), 0, 100*eps); 1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim3a_laplacian.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3a_laplacian.m -***** shared mesh,epsilon,kappa,nnodes,nelem -***** test -***** test -***** test -3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim2c_norm.m] >>>>> /build/octave-bim-1.1.5/inst/bim2c_norm.m ***** test @@ -2487,171 +2738,37 @@ uL2 = bim2c_norm (m, uvect, 'L2'); assert ([uinf, uL2], [2*V, V*L*sqrt(5)], 1e-12); 4 tests, 4 passed, 0 known failure, 0 skipped -[inst/bim2a_reaction.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_reaction.m -***** shared mesh,delta,zeta,nnodes,nelem -***** test +[inst/bim1c_norm.m] +>>>>> /build/octave-bim-1.1.5/inst/bim1c_norm.m +***** xtest +***** shared L, V, m + L = rand (1); V = rand (1); m = linspace (0,1,5).^2; m *= L; + u = V * ones (size (m))'; + uinf = bim1c_norm (m, u, 'inf'); + uL2 = bim1c_norm (m, u, 'L2'); + uH1 = bim1c_norm (m, u, 'H1'); + assert ([uinf, uL2, uH1], [V, V*sqrt(L), V*sqrt(L)], 1e-12); ***** test + u = V * m'; + uinf = bim1c_norm (m, u, 'inf'); + uL2 = bim1c_norm (m, u, 'L2'); + uH1 = bim1c_norm (m, u, 'H1'); + assert ([uinf, uL2, uH1], + [L*V, V*sqrt(L^3/3), V*sqrt(L^3/3 + L)], + 1e-12); ***** test + u = V * ones (size (diff (m)))'; + uinf = bim1c_norm (m, u, 'inf'); + uL2 = bim1c_norm (m, u, 'L2'); + assert ([uinf, uL2], [V, V*sqrt(L)], 1e-12); 3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim1c_elem_to_nodes.m] ->>>>> /build/octave-bim-1.1.5/inst/bim1c_elem_to_nodes.m -***** test - n = 10; msh = linspace (0, 1, n+1); - nel = n; - nnod = n+1; - u_el = randn (nel, 1); - un1 = bim1c_elem_to_nodes (msh, u_el); - [un2, m] = bim1c_elem_to_nodes (msh, u_el); - un3 = bim1c_elem_to_nodes (m, u_el); - [un4, m] = bim1c_elem_to_nodes (m, u_el); - assert (un1, un2, 1e-10) - assert (un1, un3, 1e-10) - assert (un1, un4, 1e-10) -1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim2a_axisymmetric_reaction.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_reaction.m -***** shared mesh,delta,zeta,nnodes,nelem -***** test -***** test -***** test -***** test - n = 20; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r) .* exp(1-z); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) -uex(r,z); - d2uexdz2 = @(r,z) uex(r,z); - Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - D = 1; vr = 1; vz = 1; sigma = 1; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - delta = sigma*ones(columns(mesh.t),1); - zeta = ones(columns(mesh.p),1); - beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - - D.*d2uexdz2(r,z) + vz * duexdz(r,z) ... - + sigma * uex(r,z); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - C = bim2a_axisymmetric_reaction(mesh,delta,zeta); - S += C; - u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); - u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) -4 tests, 4 passed, 0 known failure, 0 skipped -[inst/bim3c_tri_to_nodes.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3c_tri_to_nodes.m -***** test - msh = bim3c_mesh_properties (msh3m_structured_mesh (linspace (0, 1, 31), linspace (0, 1, 13), linspace (0, 1, 13), 1, 1:6)); - nel = columns (msh.t); - nnod = columns (msh.p); - u_tri = randn (nel, 1); - un1 = bim3c_tri_to_nodes (msh, u_tri); - [un2, m] = bim3c_tri_to_nodes (msh, u_tri); - assert (un1, un2, 1e-10) -1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim1a_advection_diffusion.m] ->>>>> /build/octave-bim-1.1.5/inst/bim1a_advection_diffusion.m -***** test - x = linspace(0,1,101); - A = bim1a_advection_diffusion(x,1,1,1,0); - alpha = ones(100,1); - gamma = ones(101,1); - eta = gamma; - B = bim1a_advection_diffusion(x,alpha,gamma,eta,0); - assert(A,B) -1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim3a_osc_laplacian.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3a_osc_laplacian.m -***** shared msh, epsilon, M, nnodes, nelem, x, y, z -***** test - msh = bim3c_mesh_properties (msh3m_structured_mesh (0:5, 0:5, 0:5, 1, 1:6)); - x = msh.p (1, :).'; - y = msh.p (2, :).'; - z = msh.p (3, :).'; - u = ones (size (x)); - M = bim3a_osc_laplacian (msh, 1); - assert (M * u, zeros (size (u)), eps * 100) -***** test - u = x; - bnd = bim3c_unknowns_on_faces (msh, [1, 2]); - int = setdiff (1:columns (msh.p), bnd); - assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) -***** test - u = y; - bnd = bim3c_unknowns_on_faces (msh, [3, 4]); - int = setdiff (1:columns (msh.p), bnd); - assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) -***** test - u = z; - bnd = bim3c_unknowns_on_faces (msh, [5, 6]); - int = setdiff (1:columns (msh.p), bnd); - assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) -***** test - u = z; - bnd = bim3c_unknowns_on_faces (msh, [5, 6]); - int = setdiff (1:columns (msh.p), bnd); - M = bim3a_osc_laplacian (msh, pi); - assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) -5 tests, 5 passed, 0 known failure, 0 skipped -[inst/bim1a_rhs.m] ->>>>> /build/octave-bim-1.1.5/inst/bim1a_rhs.m -***** test - x = linspace(0,1,101); - A = bim1a_rhs(x,1,1); - delta = ones(100,1); - zeta = ones(101,1); - B = bim1a_rhs(x,delta,zeta); - assert(A,B) -1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim3a_rhs.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3a_rhs.m -***** shared mesh,f,g,nnodes,nelem +[inst/bim3c_unknowns_on_faces.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3c_unknowns_on_faces.m +***** shared mesh ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim3c_norm.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3c_norm.m -***** test -***** shared L, V, x, y, z, m - L = rand (1); V = rand (1); x = linspace (0,L,4); y = x; z = x; - m = msh3m_structured_mesh (x,y,z,1,1:6); - m.area = msh3m_geometrical_properties (m, 'area'); - m.shg = msh3m_geometrical_properties (m, 'shg'); - u = V * ones (columns(m.p),1); - uinf = bim3c_norm (m, u, 'inf'); - uL2 = bim3c_norm (m, u, 'L2'); - uH1 = bim3c_norm (m, u, 'H1'); - assert ([uinf, uL2, uH1], [V, V*sqrt(L^3), V*sqrt(L^3)], 1e-12); -***** test - u = V * (m.p(1,:) + 2*m.p(2,:) + 3*m.p(3,:))'; - uinf = bim3c_norm (m, u, 'inf'); - uL2 = bim3c_norm (m, u, 'L2'); - uH1 = bim3c_norm (m, u, 'H1'); - assert ([uinf, uL2, uH1], - [6*L*V, V*sqrt(61/6*L^5), V*sqrt(61/6*L^5 + 14*L^3)], - 1e-12); -***** test - u = V * ones (columns(m.t),1); - uinf = bim3c_norm (m, u, 'inf'); - uL2 = bim3c_norm (m, u, 'L2'); - assert ([uinf, uL2], [V, V*sqrt(L^3)], 1e-12); -***** test - u = V * ones (columns(m.t),1); - uvect = [u, 2*u, 3*u]; - uinf = bim3c_norm (m, uvect, 'inf'); - uL2 = bim3c_norm (m, uvect, 'L2'); - assert ([uinf, uL2], [3*V, V*sqrt(14*L^3)], 1e-12); -4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim3a_osc_advection_diffusion.m] >>>>> /build/octave-bim-1.1.5/inst/bim3a_osc_advection_diffusion.m ***** shared msh, epsilon, M, nnodes, nelem, x, y, z @@ -2809,186 +2926,117 @@ fpl_vtk_raw_write_field (fname_out, msh, {uosc, "u_osc"; ugal, "u_galerkin"}, {}); unlink (fname); 8 tests, 8 passed, 0 known failure, 0 skipped -[inst/bim3c_mesh_properties.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3c_mesh_properties.m -***** shared mesh +[inst/bim3c_intrp.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3c_intrp.m +***** test + msh = bim3c_mesh_properties (msh3m_structured_mesh (linspace (0, 1, 11), linspace (0, 1, 9), linspace (0, 1, 13), 1, 1:6)); + x = y = z = linspace (0, 1, 100).'; + u = msh.p(1, :).'; + ui = bim3c_intrp (msh, u, [], [x, y, z]); + assert (ui, linspace (0, 1, 100), 10*eps); +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim3c_norm.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3c_norm.m ***** test +***** shared L, V, x, y, z, m + L = rand (1); V = rand (1); x = linspace (0,L,4); y = x; z = x; + m = msh3m_structured_mesh (x,y,z,1,1:6); + m.area = msh3m_geometrical_properties (m, 'area'); + m.shg = msh3m_geometrical_properties (m, 'shg'); + u = V * ones (columns(m.p),1); + uinf = bim3c_norm (m, u, 'inf'); + uL2 = bim3c_norm (m, u, 'L2'); + uH1 = bim3c_norm (m, u, 'H1'); + assert ([uinf, uL2, uH1], [V, V*sqrt(L^3), V*sqrt(L^3)], 1e-12); ***** test + u = V * (m.p(1,:) + 2*m.p(2,:) + 3*m.p(3,:))'; + uinf = bim3c_norm (m, u, 'inf'); + uL2 = bim3c_norm (m, u, 'L2'); + uH1 = bim3c_norm (m, u, 'H1'); + assert ([uinf, uL2, uH1], + [6*L*V, V*sqrt(61/6*L^5), V*sqrt(61/6*L^5 + 14*L^3)], + 1e-12); ***** test + u = V * ones (columns(m.t),1); + uinf = bim3c_norm (m, u, 'inf'); + uL2 = bim3c_norm (m, u, 'L2'); + assert ([uinf, uL2], [V, V*sqrt(L^3)], 1e-12); ***** test + u = V * ones (columns(m.t),1); + uvect = [u, 2*u, 3*u]; + uinf = bim3c_norm (m, uvect, 'inf'); + uL2 = bim3c_norm (m, uvect, 'L2'); + assert ([uinf, uL2], [3*V, V*sqrt(14*L^3)], 1e-12); 4 tests, 4 passed, 0 known failure, 0 skipped -[inst/bim2a_advection_diffusion.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_advection_diffusion.m -***** test - [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = ones(Nelements,1); - eta = .1*ones(Nnodes,1); - beta = [ones(1,Nelements);zeros(1,Nelements)]; - gamma = ones(Nnodes,1); - f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x - (exp(10*x)-1)/(exp(10)-1); - assert(u,uex,1e-7) -***** test - [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = ones(Nelements,1); - eta = .1*ones(Nnodes,1); - beta = x; - gamma = ones(Nnodes,1); - f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x - (exp(10*x)-1)/(exp(10)-1); - assert(u,uex,1e-7) +[inst/bim3c_tri_to_nodes.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3c_tri_to_nodes.m ***** test - [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = 10*ones(Nelements,1); - eta = .01*ones(Nnodes,1); - beta = x/10; - gamma = ones(Nnodes,1); - f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x - (exp(10*x)-1)/(exp(10)-1); - assert(u,uex,1e-7) + msh = bim3c_mesh_properties (msh3m_structured_mesh (linspace (0, 1, 31), linspace (0, 1, 13), linspace (0, 1, 13), 1, 1:6)); + nel = columns (msh.t); + nnod = columns (msh.p); + u_tri = randn (nel, 1); + un1 = bim3c_tri_to_nodes (msh, u_tri); + [un2, m] = bim3c_tri_to_nodes (msh, u_tri); + assert (un1, un2, 1e-10) +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim3a_osc_laplacian.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3a_osc_laplacian.m +***** shared msh, epsilon, M, nnodes, nelem, x, y, z ***** test - [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = 10*ones(Nelements,1); eta = .001*ones(Nnodes,1); - beta = x/100; - gamma = 10*ones(Nnodes,1); - f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x - (exp(10*x)-1)/(exp(10)-1); - assert(u,uex,1e-7) + msh = bim3c_mesh_properties (msh3m_structured_mesh (0:5, 0:5, 0:5, 1, 1:6)); + x = msh.p (1, :).'; + y = msh.p (2, :).'; + z = msh.p (3, :).'; + u = ones (size (x)); + M = bim3a_osc_laplacian (msh, 1); + assert (M * u, zeros (size (u)), eps * 100) ***** test - [mesh] = msh2m_structured_mesh([0:1/1e3:1],[0:1/2:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = 3*ones(Nelements,1); eta = x+1; - beta = [ones(1,Nelements);zeros(1,Nelements)]; - gamma = 2*x; - ff = 2*(6*x.^2+6*x) - (6*x+6).*(1-2*x)+6*(x-x.^2); - f = bim2a_rhs(mesh,ones(Nelements,1),ff); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x - x.^2; - assert(u,uex,5e-3) + u = x; + bnd = bim3c_unknowns_on_faces (msh, [1, 2]); + int = setdiff (1:columns (msh.p), bnd); + assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test - [mesh] = msh2m_structured_mesh([0:1/1e3:1],[0:1/2:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = ones(Nelements,1); eta = ones(Nnodes,1); - beta = 0; - gamma = x+1; - ff = 4*x+1; - f = bim2a_rhs(mesh,ones(Nelements,1),ff); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x - x.^2; - assert(u,uex,1e-7) + u = y; + bnd = bim3c_unknowns_on_faces (msh, [3, 4]); + int = setdiff (1:columns (msh.p), bnd); + assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test - [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)';y = mesh.p(2,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - Varnodes = setdiff(1:Nnodes,Dnodes); - alpha = ones(Nelements,1); diff = 1e-2; eta=diff*ones(Nnodes,1); - beta =[ones(1,Nelements);ones(1,Nelements)]; - gamma = x*0+1; - ux = y.*(1-exp((y-1)/diff)) .* (1-exp((x-1)/diff)-x.*exp((x-1)/diff)/diff); - uy = x.*(1-exp((x-1)/diff)) .* (1-exp((y-1)/diff)-y.*exp((y-1)/diff)/diff); - uxx = y.*(1-exp((y-1)/diff)) .* (-2*exp((x-1)/diff)/diff-x.*exp((x-1)/diff)/(diff^2)); - uyy = x.*(1-exp((x-1)/diff)) .* (-2*exp((y-1)/diff)/diff-y.*exp((y-1)/diff)/(diff^2)); - ff = -diff*(uxx+uyy)+ux+uy; - f = bim2a_rhs(mesh,ones(Nelements,1),ff); - S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); - u = zeros(Nnodes,1); - u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); - uex = x.*y.*(1-exp((x-1)/diff)).*(1-exp((y-1)/diff)); - assert(u,uex,1e-7) + u = z; + bnd = bim3c_unknowns_on_faces (msh, [5, 6]); + int = setdiff (1:columns (msh.p), bnd); + assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test - [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); - mesh = bim2c_mesh_properties(mesh); - x = mesh.p(1,:)'; y = mesh.p(2,:)'; - Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); - Nnodes = columns(mesh.p); Nelements = columns(mesh.t); - alpha = ones(Nelements,1); eta=ones(Nnodes,1); - beta = 0; - gamma = ones(Nnodes,1); - A = bim2a_advection_diffusion(mesh,1,1,1,0); - B = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = z; + bnd = bim3c_unknowns_on_faces (msh, [5, 6]); + int = setdiff (1:columns (msh.p), bnd); + M = bim3a_osc_laplacian (msh, pi); + assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) +5 tests, 5 passed, 0 known failure, 0 skipped +[inst/bim1a_advection_diffusion.m] +>>>>> /build/octave-bim-1.1.5/inst/bim1a_advection_diffusion.m +***** test + x = linspace(0,1,101); + A = bim1a_advection_diffusion(x,1,1,1,0); + alpha = ones(100,1); + gamma = ones(101,1); + eta = gamma; + B = bim1a_advection_diffusion(x,alpha,gamma,eta,0); assert(A,B) -8 tests, 8 passed, 0 known failure, 0 skipped -[inst/bim2c_mesh_properties.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2c_mesh_properties.m -***** shared mesh +1 test, 1 passed, 0 known failure, 0 skipped +[inst/bim3a_rhs.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3a_rhs.m +***** shared mesh,f,g,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim3c_intrp.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3c_intrp.m -***** test - msh = bim3c_mesh_properties (msh3m_structured_mesh (linspace (0, 1, 11), linspace (0, 1, 9), linspace (0, 1, 13), 1, 1:6)); - x = y = z = linspace (0, 1, 100).'; - u = msh.p(1, :).'; - ui = bim3c_intrp (msh, u, [], [x, y, z]); - assert (ui, linspace (0, 1, 100), 10*eps); -1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim2a_rhs.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_rhs.m -***** shared mesh,f,g,nnodes,nelem +[inst/bim3a_laplacian.m] +>>>>> /build/octave-bim-1.1.5/inst/bim3a_laplacian.m +***** shared mesh,epsilon,kappa,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim2c_tri_to_nodes.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2c_tri_to_nodes.m -***** test - msh = bim2c_mesh_properties (msh2m_structured_mesh (linspace (0, 1, 3), linspace (0, 1, 3), 1, 1:4, "random")); - nel = columns (msh.t); - nnod = columns (msh.p); - u_tri = randn (nel, 1); - un1 = bim2c_tri_to_nodes (msh, u_tri); - [un2, m] = bim2c_tri_to_nodes (msh, u_tri); - assert (un1, un2, 1e-10) -1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1a_advection_upwind.m] >>>>> /build/octave-bim-1.1.5/inst/bim1a_advection_upwind.m ***** test @@ -3014,36 +3062,220 @@ u(2:end-1) = S(2:end-1,2:end-1)\(rhs(2:end-1) - S(2:end-1,[1 end])*u([1 end])); assert(u,uex(mesh),1e-3) 1 test, 1 passed, 0 known failure, 0 skipped -[inst/bim2a_axisymmetric_rhs.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_rhs.m -***** shared mesh,f,g,nnodes,nelem +[inst/bim2a_axisymmetric_reaction.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_reaction.m +***** shared mesh,delta,zeta,nnodes,nelem ***** test ***** test ***** test -3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim1a_axisymmetric_advection_upwind.m] ->>>>> /build/octave-bim-1.1.5/inst/bim1a_axisymmetric_advection_upwind.m ***** test - nn = 20; - mesh = linspace(1,2,nn+1)'; - D = 1; v = 0; sigma = 0; - uex = @(r) exp(r); - duexdr = @(r) uex(r); - d2uexdr2 = @(r) uex(r); - f = @(r,z) -D./r.*duexdr(r) - D.*d2uexdr2(r) ... - + v./r .* uex(r) + v * duexdr(r) ... - + sigma * uex(r); - uex_left = uex(mesh(1)); uex_right = uex(mesh(end)); - Ar = bim1a_axisymmetric_laplacian (mesh, D, 1); - Adv = bim1a_axisymmetric_advection_upwind (mesh, v*ones(nn,1)); - R = bim1a_axisymmetric_reaction (mesh, sigma, 1); - M = Ar + Adv + R; - M(1,:) *= 0; M(1,1) = 1; - M(end,:) *= 0; M(end, end) = 1; - rhs = bim1a_axisymmetric_rhs (mesh, 1, f(mesh)); - rhs(1) = uex_left; rhs(end) = uex_right; - uh = M \ rhs; - assert(uh, uex(mesh), 1e-3); + n = 20; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r) .* exp(1-z); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) -uex(r,z); + d2uexdz2 = @(r,z) uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; vr = 1; vz = 1; sigma = 1; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + delta = sigma*ones(columns(mesh.t),1); + zeta = ones(columns(mesh.p),1); + beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + vr./r .* uex(r,z) + vr * duexdr(r,z) ... + - D.*d2uexdz2(r,z) + vz * duexdz(r,z) ... + + sigma * uex(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + C = bim2a_axisymmetric_reaction(mesh,delta,zeta); + S += C; + u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) +4 tests, 4 passed, 0 known failure, 0 skipped +[inst/bim2a_axisymmetric_advection_diffusion.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_advection_diffusion.m +***** test + n = 3; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) 0*uex(r,z); + d2uexdz2 = @(r,z) 0*uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; vr = 1; vz = 0; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + vr./r .* uex(r,z) + vr * duexdr(r,z) ... + - D.*d2uexdz2(r,z) + vz * duexdz(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) +***** test + n = 20; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r) .* exp(1-z); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) -uex(r,z); + d2uexdz2 = @(r,z) uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; vr = 1; vz = 1; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + vr./r .* uex(r,z) + vr * duexdr(r,z) ... + - D.*d2uexdz2(r,z) + vz * duexdz(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) +***** test + n = 10; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r) .* exp(1-z); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) -uex(r,z); + d2uexdz2 = @(r,z) uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D * mesh.p(1,:)'; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + 1./r .* uex(r,z) + duexdr(r,z) ... + - D.*d2uexdz2(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) +***** test + n = 10; + [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r) .* exp(1-z); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) -uex(r,z); + d2uexdz2 = @(r,z) uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D * 1/2*(mesh.p(1,:)').^2; + f = @(r,z) 1./r.*(1+r).*(r-D) .* uex(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) +***** test + n = 3; + [mesh] = msh2m_structured_mesh(linspace(-2,-1,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) 0*uex(r,z); + d2uexdz2 = @(r,z) 0*uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; vr = 1; vz = 0; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; + f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + + vr./r .* uex(r,z) + vr * duexdr(r,z) ... + - D.*d2uexdz2(r,z) + vz * duexdz(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(abs(mesh.p(1,:)), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); u(Dnodes) = uex(abs(mesh.p(1,Dnodes)), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(abs(mesh.p(1,:)), mesh.p(2,:))',1e-7) +***** test + n = 10; + [mesh] = msh2m_structured_mesh(linspace(-2,-1,n+1),linspace(0,1,n+1),1,1:4); + mesh = bim2c_mesh_properties(mesh); + uex = @(r,z) exp(r) .* exp(1-z); + duexdr = @(r,z) uex(r,z); + d2uexdr2 = @(r,z) uex(r,z); + duexdz = @(r,z) -uex(r,z); + d2uexdz2 = @(r,z) uex(r,z); + Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); + Nnodes = columns(mesh.p); + Nelements = columns(mesh.t); + Varnodes = setdiff(1:Nnodes,Dnodes); + D = 1; + alpha = D*ones(Nelements,1); + gamma = ones(Nnodes,1); + eta = ones(Nnodes,1); + beta = 1/D * 1/2*(mesh.p(1,:)').^2; + f = @(r,z) 1./r.*(1+r).*(r-D) .* uex(r,z); + rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(abs(mesh.p(1,:)), mesh.p(2,:))); + S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + u = zeros(Nnodes,1); u(Dnodes) = uex(abs(mesh.p(1,Dnodes)), mesh.p(2,Dnodes)); + u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); + assert(u,uex(abs(mesh.p(1,:)), mesh.p(2,:))',1e-3) +***** test + [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); + mesh = bim2c_mesh_properties(mesh); + x = mesh.p(1,:)'; y = mesh.p(2,:)'; + Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); + Nnodes = columns(mesh.p); Nelements = columns(mesh.t); + alpha = ones(Nelements,1); eta=ones(Nnodes,1); + beta = 0; + gamma = ones(Nnodes,1); + A = bim2a_axisymmetric_advection_diffusion(mesh,1,1,1,0); + B = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); + assert(A,B) +7 tests, 7 passed, 0 known failure, 0 skipped +[inst/bim1a_reaction.m] +>>>>> /build/octave-bim-1.1.5/inst/bim1a_reaction.m +***** test + x = linspace(0,1,101); + A = bim1a_reaction(x,1,1); + delta = ones(100,1); + zeta = ones(101,1); + B = bim1a_reaction(x,delta,zeta); + assert(A,B) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_reaction.m] >>>>> /build/octave-bim-1.1.5/inst/bim1a_axisymmetric_reaction.m @@ -3099,91 +3331,23 @@ B = bim1a_axisymmetric_reaction(x,delta,zeta); assert(A,B) 3 tests, 3 passed, 0 known failure, 0 skipped -[inst/bim2a_axisymmetric_boundary_mass.m] ->>>>> /build/octave-bim-1.1.5/inst/bim2a_axisymmetric_boundary_mass.m +[inst/bim2a_rhs.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2a_rhs.m +***** shared mesh,f,g,nnodes,nelem ***** test - n = 3; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) 0*uex(r,z); - d2uexdz2 = @(r,z) 0*uex(r,z); - Rnodesr = bim2c_unknowns_on_side(mesh,[2]); - Rnodesl = bim2c_unknowns_on_side(mesh,[4]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - D = 1; vr = 1; vz = 0; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - - D.*d2uexdz2(r,z) + vz * duexdz(r,z); - gr = @(r,z) uex(r,z) - 1 * (-D*duexdr(r,z) + vr*uex(r,z)); - gl = @(r,z) uex(r,z) - (-1) * (-D*duexdr(r,z) + vr*uex(r,z)); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - Mr = bim2a_axisymmetric_boundary_mass(mesh,2); Ml = bim2a_axisymmetric_boundary_mass(mesh,4); - S(Rnodesr,Rnodesr) += Mr; - rhs(Rnodesr) += diag(Mr) .* gr(mesh.p(1,Rnodesr), mesh.p(2,Rnodesr))'; - S(Rnodesl,Rnodesl) += Ml; - rhs(Rnodesl) += diag(Ml) .* gl(mesh.p(1,Rnodesl), mesh.p(2,Rnodesl))'; - u = S\rhs; - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) ***** test - n = 10; - [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); - mesh = bim2c_mesh_properties(mesh); - uex = @(r,z) exp(r); - duexdr = @(r,z) uex(r,z); - d2uexdr2 = @(r,z) uex(r,z); - duexdz = @(r,z) 0*uex(r,z); - d2uexdz2 = @(r,z) 0*uex(r,z); - Rnodesr = bim2c_unknowns_on_side(mesh,[2]); - Rnodesl = bim2c_unknowns_on_side(mesh,[4]); - Rnodesb = bim2c_unknowns_on_side(mesh,[1]); - Rnodest = bim2c_unknowns_on_side(mesh,[3]); - Nnodes = columns(mesh.p); - Nelements = columns(mesh.t); - D = 1; vr = 1; vz = 0; - alpha = D*ones(Nelements,1); - gamma = ones(Nnodes,1); - eta = ones(Nnodes,1); - beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; - f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... - + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - - D.*d2uexdz2(r,z) + vz * duexdz(r,z); - gr = @(r,z) uex(r,z) - 1 * (-D*duexdr(r,z) + vr*uex(r,z)); - gl = @(r,z) uex(r,z) - (-1) * (-D*duexdr(r,z) + vr*uex(r,z)); - gb = @(r,z) uex(r,z) - (-1) * (-D*duexdz(r,z) + vz*uex(r,z)); - gt = @(r,z) uex(r,z) - 1 * (-D*duexdz(r,z) + vz*uex(r,z)); - rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); - S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); - Mr = bim2a_axisymmetric_boundary_mass(mesh,2); Ml = bim2a_axisymmetric_boundary_mass(mesh,4); - Mb = bim2a_axisymmetric_boundary_mass(mesh,1); Mt = bim2a_axisymmetric_boundary_mass(mesh,3); - S(Rnodesr,Rnodesr) += Mr; - rhs(Rnodesr) += diag(Mr) .* gr(mesh.p(1,Rnodesr), mesh.p(2,Rnodesr))'; - S(Rnodesl,Rnodesl) += Ml; - rhs(Rnodesl) += diag(Ml) .* gl(mesh.p(1,Rnodesl), mesh.p(2,Rnodesl))'; - S(Rnodesb,Rnodesb) += Mb; - rhs(Rnodesb) += diag(Mb) .* gb(mesh.p(1,Rnodesb), mesh.p(2,Rnodesb))'; - S(Rnodest,Rnodest) += Mt; - rhs(Rnodest) += diag(Mt) .* gt(mesh.p(1,Rnodest), mesh.p(2,Rnodest))'; - u = S\rhs; - assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) -2 tests, 2 passed, 0 known failure, 0 skipped -[inst/bim3c_global_flux.m] ->>>>> /build/octave-bim-1.1.5/inst/bim3c_global_flux.m ***** test - N = 10; pp = linspace (0, 1, N); msh = bim3c_mesh_properties (msh3m_structured_mesh (pp, pp, pp, 1, 1:6)); - u = ones (N^3, 1); - v = ones (N^3, 1); - alpha = ones (columns (msh.t), 1); - F = bim3c_global_flux (msh, u, alpha, v); - assert (norm (F(:), inf), 0, 100*eps); +3 tests, 3 passed, 0 known failure, 0 skipped +[inst/bim2c_tri_to_nodes.m] +>>>>> /build/octave-bim-1.1.5/inst/bim2c_tri_to_nodes.m +***** test + msh = bim2c_mesh_properties (msh2m_structured_mesh (linspace (0, 1, 3), linspace (0, 1, 3), 1, 1:4, "random")); + nel = columns (msh.t); + nnod = columns (msh.p); + u_tri = randn (nel, 1); + un1 = bim2c_tri_to_nodes (msh, u_tri); + [un2, m] = bim2c_tri_to_nodes (msh, u_tri); + assert (un1, un2, 1e-10) 1 test, 1 passed, 0 known failure, 0 skipped Checking C++ files ... Summary: 92 tests, 92 passed, 0 known failures, 0 skipped @@ -3212,12 +3376,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/4134/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4134/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1126 and its subdirectories -I: Current time: Mon May 18 20:14:43 -12 2020 -I: pbuilder-time-stamp: 1589876083 +I: removing directory /srv/workspace/pbuilder/4134 and its subdirectories +I: Current time: Tue May 19 22:27:48 +14 2020 +I: pbuilder-time-stamp: 1589876868