Diff of the two buildlogs: -- --- b1/build.log 2020-10-02 12:52:10.870591667 +0000 +++ b2/build.log 2020-10-02 12:59:11.536628618 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 2 00:34:40 -12 2020 -I: pbuilder-time-stamp: 1601642080 +I: Current time: Sat Oct 3 02:52:28 +14 2020 +I: pbuilder-time-stamp: 1601643148 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Wed Jul 4 22:10:34 2018 -12 +gpgv: Signature made Fri Jul 6 00:10:34 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -33,136 +33,170 @@ dpkg-source: info: applying enable_tests_in_local_dir.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11112/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28273/tmp/hooks/D01_modify_environment starting +debug: Running on ff2a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28273/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28273/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0c4a46cd8a464e94b0b857288862dab2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='11112' - PS1='# ' - PS2='> ' + INVOCATION_ID=bb34cc545e754c519873d455efc45b53 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28273 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.GntO6uqKSw/pbuilderrc_a3Bl --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.GntO6uqKSw/b1 --logfile b1/build.log microbiomeutil_20101212+dfsg1-2.dsc' - SUDO_GID='115' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.GntO6uqKSw/pbuilderrc_MZ70 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.GntO6uqKSw/b2 --logfile b2/build.log microbiomeutil_20101212+dfsg1-2.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux p64b 4.19.0-11-arm64 #1 SMP Debian 4.19.146-1 (2020-09-17) aarch64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-11-armmp-lpae #1 SMP Debian 4.19.146-1 (2020-09-17) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 20:27 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/11112/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Oct 3 02:52 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 21 22:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/28273/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -259,7 +293,7 @@ Get: 55 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 56 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 57 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] -Fetched 36.9 MB in 6s (6016 kB/s) +Fetched 36.9 MB in 4s (8219 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -512,7 +546,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/microbiomeutil-20101212+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/microbiomeutil-20101212+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package microbiomeutil dpkg-buildpackage: info: source version 20101212+dfsg1-2 dpkg-buildpackage: info: source distribution unstable @@ -524,7 +558,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/microbiomeutil-20101212+dfsg1' dh_auto_clean - make -j3 clean + make -j4 clean make[2]: Entering directory '/build/microbiomeutil-20101212+dfsg1' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ @@ -577,7 +611,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/microbiomeutil-20101212+dfsg1' dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/microbiomeutil-20101212+dfsg1' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ @@ -612,20 +646,20 @@ formatdb -p F -i RESOURCES/rRNA16S.gold.fasta 2>/dev/null -Building a new DB, current time: 10/02/2020 00:36:56 +Building a new DB, current time: 10/03/2020 02:53:33 New DB name: /build/microbiomeutil-20101212+dfsg1/RESOURCES/rRNA16S.gold.fasta New DB title: RESOURCES/rRNA16S.gold.fasta Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B -Adding sequences from FASTA; added 5181 sequences in 2.49185 seconds. +Adding sequences from FASTA; added 5181 sequences in 0.827647 seconds. cdbfasta -C RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta 5181 entries from file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta were indexed in file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta.cidx make[1]: Leaving directory '/build/microbiomeutil-20101212+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/microbiomeutil-20101212+dfsg1' dh_auto_test - make -j3 test + make -j4 test make[2]: Entering directory '/build/microbiomeutil-20101212+dfsg1' cd NAST-iEr; make test cd WigeoN; make test @@ -634,48 +668,42 @@ make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/microbiomeutil-20101212+dfsg1/WigeoN' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. -cd ./sample_data; make test make[3]: Entering directory '/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make test cd ./sample_data; make test +cd ./sample_data; make test make[4]: Entering directory '/build/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data' make[4]: Entering directory '/build/microbiomeutil-20101212+dfsg1/WigeoN/sample_data' # # make[4]: Entering directory '/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data' # -#************* TESTING WigeoN ********************" +#********** TESTING Chimera Slayer *************" #*************** TESTING NAST-iEr *********************** +#************* TESTING WigeoN ********************" # # -#********** TESTING Chimera Slayer *************" # ./runMe.sh -./testForUtils.pl ./runMe.sh +./testForUtils.pl ./runMe.sh query to NAST format -../NAST-iEr template_seqs.NAST query_seq.fasta > tmp.query.NAST - - +../NAST-iEr template_seqs.NAST query_seq.fasta > tmp.query.NAST\n\n Can't locate Fasta_reader.pm in @INC (you may need to install the Fasta_reader module) (@INC contains: /usr/lib/WigeoN/PerlLib /etc/perl /usr/local/lib/arm-linux-gnueabihf/perl/5.28.1 /usr/local/share/perl/5.28.1 /usr/lib/arm-linux-gnueabihf/perl5/5.28 /usr/share/perl5 /usr/lib/arm-linux-gnueabihf/perl/5.28 /usr/share/perl/5.28 /usr/local/lib/site_perl /usr/lib/arm-linux-gnueabihf/perl-base) at ../run_WigeoN.pl line 13. BEGIN failed--compilation aborted at ../run_WigeoN.pl line 13. make[4]: Leaving directory '/build/microbiomeutil-20101212+dfsg1/WigeoN/sample_data' make[3]: Leaving directory '/build/microbiomeutil-20101212+dfsg1/WigeoN' CMD: ../../ChimeraSlayer/ChimeraParentSelector/run_chimeraParentSelector.pl --query_NAST chims.NAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta --db_FASTA ../../RESOURCES/rRNA16S.gold.fasta -n 15 -P 90 -R 1.007 > chims.NAST.CPS query and template (profile) to query NAST and template consensus NAST -../NAST-iEr -b template_seqs.NAST query_seq.fasta > tmp.both.NAST - - +../NAST-iEr -b template_seqs.NAST query_seq.fasta > tmp.both.NAST\n\n converting NAST mfasta to multi-alignment output highlighting differences -../show_malign_no_gap.pl --IGNOREGAPS tmp.both.NAST > tmp.both.NAST.malign - - +../show_malign_no_gap.pl --IGNOREGAPS tmp.both.NAST > tmp.both.NAST.malign\n\n Run via the megablast wrapper -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 Num template seqs to align to: 2 Alignment parameters: MATCH: 5 @@ -685,35 +713,35 @@ Highest score: 11681 make[4]: Leaving directory '/build/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data' make[3]: Leaving directory '/build/microbiomeutil-20101212+dfsg1/NAST-iEr' - T(1)=8 s -ChimeraParentSelector(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 8 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=8 s -ChimeraParentSelector(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 8 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=8 s -ChimeraParentSelector(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 8 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=5 s -ChimeraParentSelector(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 5 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 + T(1)=4 s +ChimeraParentSelector(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 4 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=3 s +ChimeraParentSelector(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 3 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=3 s +ChimeraParentSelector(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 3 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=2 s +ChimeraParentSelector(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 2 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 T(1)=2 s ChimeraParentSelector(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 2 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=8 s -ChimeraParentSelector(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 8 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=7 s -ChimeraParentSelector(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 7 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=6 s -ChimeraParentSelector(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 6 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=5 s -ChimeraParentSelector(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 5 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.15310.query --db_NAST /tmp/tmp.15310.db -R 1.007 - T(1)=8 s -ChimeraParentSelector(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 8 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=3 s +ChimeraParentSelector(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 3 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=2 s +ChimeraParentSelector(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 2 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=2 s +ChimeraParentSelector(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 2 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=2 s +ChimeraParentSelector(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 2 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.29398.query --db_NAST /tmp/tmp.29398.db -R 1.007 + T(1)=3 s +ChimeraParentSelector(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 3 seconds CMD: ../../ChimeraSlayer/ChimeraParentSelector/CPS_to_RENAST.pl --CPS_output chims.NAST.CPS --query_NAST chims.NAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta > chims.NAST.CPS_RENAST processing: ChimeraParentSelector chmraD24_7000004128191580_1-4580:4581-7682_S000428666 YES 100.00[(7000004128191580, NAST:164-4593, ECO:36-940, RawLen:876, G:90.90, L:100.00, 1.100);(S000428666, NAST:4594-6747, ECO:940-1470, RawLen:531, G:84.36, L:100.00, 1.185)] 10 entries from file chims.NAST were indexed in file chims.NAST.cidx @@ -788,58 +816,58 @@ Highest score: 11227 CMD: ../../ChimeraSlayer/ChimeraPhyloChecker/CPS_to_CPC.pl --CPS_output chims.NAST.CPS --query_NAST chims.NAST.CPS_RENAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta -P 90 -R 1.007 --minBS 90 --printAlignments > chims.NAST.CPS.CPC 10 entries from file chims.NAST.CPS_RENAST were indexed in file chims.NAST.CPS_RENAST.cidx -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (7000004128191580, S000428666) or (0, 1) took 31 seconds -ChimeraSlayer(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 83 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000378387, S000016146) or (0, 1) took 30 seconds -ChimeraSlayer(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 64 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (7000004131500344, S000127669) or (0, 1) took 28 seconds -ChimeraSlayer(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 56 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000004801, S000437365) or (0, 1) took 27 seconds -ChimeraSlayer(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 61 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000437007, S000437299) or (0, 1) took 27 seconds -ChimeraSlayer(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 52 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000414109, S000253432) or (0, 1) took 27 seconds -ChimeraSlayer(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 60 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (7000004131502379, 7000004128198963) or (0, 1) took 34 seconds -ChimeraSlayer(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 94 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000503167, S000004272) or (0, 1) took 27 seconds -ChimeraSlayer(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 44 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000436014, 7000004128189973) or (0, 1) took 26 seconds -ChimeraSlayer(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 41 seconds -/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.16435.query --db_NAST /tmp/tmp.16435.db -P 90 -R 1.007 --minBS 90 --printAlignments - examined parents (S000009720, S000437236) or (0, 1) took 28 seconds -ChimeraSlayer(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 65 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (7000004128191580, S000428666) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 29 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000378387, S000016146) or (0, 1) took 10 seconds +ChimeraSlayer(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 23 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (7000004131500344, S000127669) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 19 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000004801, S000437365) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 22 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000437007, S000437299) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 17 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000414109, S000253432) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 21 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (7000004131502379, 7000004128198963) or (0, 1) took 12 seconds +ChimeraSlayer(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 32 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000503167, S000004272) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 15 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000436014, 7000004128189973) or (0, 1) took 8 seconds +ChimeraSlayer(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 13 seconds +/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.29804.query --db_NAST /tmp/tmp.29804.db -P 90 -R 1.007 --minBS 90 --printAlignments + examined parents (S000009720, S000437236) or (0, 1) took 9 seconds +ChimeraSlayer(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 22 seconds CMD: ../../ChimeraSlayer/util/CS_add_taxonomy.pl < chims.NAST.CPS.CPC > chims.NAST.CPS.CPC.wTaxons CMD: ../../ChimeraSlayer/ChimeraParentSelector/CPC_to_CPS.pl --CPC_output chims.NAST.CPS.CPC --query_NAST chims.NAST.CPS_RENAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta > chims.NAST.CPS.CPC.align T(1)=1 s ChimeraParentSelector(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 1 seconds - T(1)=1 s -ChimeraParentSelector(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 1 seconds + T(1)=0 s +ChimeraParentSelector(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 0 seconds T(1)=1 s ChimeraParentSelector(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 1 seconds - T(1)=1 s -ChimeraParentSelector(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 1 seconds + T(1)=0 s +ChimeraParentSelector(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 0 seconds T(1)=1 s ChimeraParentSelector(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 1 seconds - T(1)=1 s -ChimeraParentSelector(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 1 seconds - T(1)=1 s -ChimeraParentSelector(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 1 seconds + T(1)=0 s +ChimeraParentSelector(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 0 seconds + T(1)=0 s +ChimeraParentSelector(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 0 seconds T(1)=1 s ChimeraParentSelector(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 1 seconds - T(1)=1 s -ChimeraParentSelector(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 1 seconds + T(1)=0 s +ChimeraParentSelector(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 0 seconds make[4]: Leaving directory '/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data' make[3]: Leaving directory '/build/microbiomeutil-20101212+dfsg1/ChimeraSlayer' make[2]: Leaving directory '/build/microbiomeutil-20101212+dfsg1' @@ -895,8 +923,8 @@ dpkg-gencontrol: warning: package wigeon: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'nast-ier' in '../nast-ier_20101212+dfsg1-2_armhf.deb'. dpkg-deb: building package 'microbiomeutil' in '../microbiomeutil_20101212+dfsg1-2_all.deb'. +dpkg-deb: building package 'nast-ier' in '../nast-ier_20101212+dfsg1-2_armhf.deb'. dpkg-deb: building package 'wigeon' in '../wigeon_20101212+dfsg1-2_all.deb'. dpkg-deb: building package 'chimeraslayer' in '../chimeraslayer_20101212+dfsg1-2_all.deb'. dpkg-deb: building package 'nast-ier-dbgsym' in '../nast-ier-dbgsym_20101212+dfsg1-2_armhf.deb'. @@ -907,12 +935,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/28273/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28273/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11112 and its subdirectories -I: Current time: Fri Oct 2 00:52:05 -12 2020 -I: pbuilder-time-stamp: 1601643125 +I: removing directory /srv/workspace/pbuilder/28273 and its subdirectories +I: Current time: Sat Oct 3 02:59:07 +14 2020 +I: pbuilder-time-stamp: 1601643547