Diff of the two buildlogs: -- --- b1/build.log 2020-08-06 19:34:51.670971348 +0000 +++ b2/build.log 2020-08-06 19:57:08.333546791 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 6 06:46:04 -12 2020 -I: pbuilder-time-stamp: 1596739564 +I: Current time: Fri Aug 7 09:35:21 +14 2020 +I: pbuilder-time-stamp: 1596742521 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Feb 5 07:15:23 2019 -12 +gpgv: Signature made Wed Feb 6 09:15:23 2019 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key @@ -30,136 +30,170 @@ dpkg-source: info: applying fix-test.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/30121/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25978/tmp/hooks/D01_modify_environment starting +debug: Running on ff64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25978/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25978/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f24c6816c9aa40ff9ab6a04f3bb8285a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='30121' - PS1='# ' - PS2='> ' + INVOCATION_ID=c3735582541e465e9d5a367833632434 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25978 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OT4WS8PMDf/pbuilderrc_RH2R --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OT4WS8PMDf/b1 --logfile b1/build.log meep-mpich2_1.7.0-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OT4WS8PMDf/pbuilderrc_xj4k --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OT4WS8PMDf/b2 --logfile b2/build.log meep-mpich2_1.7.0-3.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtk1a 4.19.0-10-armmp-lpae #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux + Linux i-capture-the-hostname 4.19.0-10-arm64 #1 SMP Debian 4.19.132-1 (2020-07-24) aarch64 GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 5 20:27 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/30121/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 7 09:35 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 5 22:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/25978/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -341,7 +375,7 @@ Get: 110 http://deb.debian.org/debian buster/main armhf python-h5py armhf 2.8.0-3 [611 kB] Get: 111 http://deb.debian.org/debian buster/main armhf swig3.0 armhf 3.0.12-2 [1342 kB] Get: 112 http://deb.debian.org/debian buster/main armhf swig armhf 3.0.12-2 [310 kB] -Fetched 97.5 MB in 38s (2539 kB/s) +Fetched 97.5 MB in 10s (9987 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -827,7 +861,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/meep-mpich2-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/meep-mpich2-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package meep-mpich2 dpkg-buildpackage: info: source version 1.7.0-3 dpkg-buildpackage: info: source distribution sid @@ -1084,7 +1118,7 @@ configure: WARNING: unrecognized options: --enable-cxx make[1]: Leaving directory '/build/meep-mpich2-1.7.0' dh_auto_build - make -j3 + make -j6 make[1]: Entering directory '/build/meep-mpich2-1.7.0' make all-recursive make[2]: Entering directory '/build/meep-mpich2-1.7.0' @@ -1095,22 +1129,25 @@ make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpich2-1.7.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h make all-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array_slice.lo array_slice.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. 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value-initialization instead [-Wclass-memaccess] memset(reduced_array,0,reduced_size*sizeof(cdouble)); @@ -1147,13 +1184,8 @@ dft.cpp:1030:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] if (!real_array) abort("%s:%i:out of memory(%lu)",__FILE__,__LINE__,array_size); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c 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-fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 energy_and_flux.cpp: In member function 'double meep::fields::flux_in_box_wrongH(meep::direction, const meep::volume&)': energy_and_flux.cpp:219:26: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; @@ -1164,29 +1196,31 @@ ~~~~~~^~~~~~~ energy_and_flux.cpp:219:11: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 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be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); @@ -1286,9 +1320,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -susceptibility.cpp:158:13: warning: 'bool meep::lorentzian_unstable(double, double, double)' defined but not used [-Wunused-function] - static bool lorentzian_unstable(double omega_0, double gamma, double dt) { - ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:545:31: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); @@ -1302,31 +1333,34 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +susceptibility.cpp:158:13: warning: 'bool meep::lorentzian_unstable(double, double, double)' defined but not used [-Wunused-function] + static bool lorentzian_unstable(double omega_0, double gamma, double dt) { + ^~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat 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initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/control_c.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/step_generic_stride1.o -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -Wl,-soname -Wl,libmeep.so.12 -o .libs/libmeep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.12" && ln -s "libmeep.so.12.0.0" "libmeep.so.12") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.12.0.0" "libmeep.so") @@ -1345,21 +1379,21 @@ gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl gen-ctl-io --cxx --swig -o ctl-io.i meep.scm /usr/share/libctl (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; perl -pe 's/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){.*$/%rename(meep_\1) meep::\1;/' ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | grep "%rename" | sort -u; echo; grep -hv typedef ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/(inline|const|extern|static) +//g' | perl -pe 's/^[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%rename(meep_\1) meep::\1;/' | grep "%rename" | sort -u; ) > meep_renames.i -Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){ <-- HERE .*$/ at -e line 1. (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; for f in ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp; do egrep "^enum" $f | perl -pe 's/enum +([A-Za-z_0-9:]+).*$/\1/g' | while read enum; do cat $f | tr -d '\n' | perl -pe 's/.*enum +'${enum}' *{([^}]*)}.*/\1/g' | perl -pe 's/= *[0-9]+//g' |tr -d ' \t' | tr ',' '\n' | perl -pe 's/^(.*)$/'"%rename(meep_${enum}_\1) meep::\1;/g"; echo; done; done;) > meep_enum_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; grep -h friend ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/^ *friend +[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%ignore \1;/' | grep "%ignore" | sort -u;) > meep_swig_bug_workaround.i +Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){ <-- HERE .*$/ at -e line 1. (perl -pe 's/%rename\(([A-Za-z0-9_]*)\) *([A-Za-z0-9:_]*);$/(define \2 (\1))/' meep_enum_renames.i | perl -pe 's/[A-Za-z0-9:_]*:://g' | perl -pe 's/_/-/g' | perl -pe 's,//,;,'; echo "(define Centered Dielectric)") > meep-enums.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" +swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" -swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl @@ -1378,6 +1412,8 @@ mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-structure.o `test -f 'structure.cpp' || echo './'`structure.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep_wrap.o `test -f 'meep_wrap.cxx' || echo './'`meep_wrap.cxx mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp +mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp +mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp main.cpp: In function 'char* make_name(const char*, const char*)': main.cpp:140:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ndir > 5 && !strcmp(".libs", dir+ndir-5)) @@ -1397,36 +1433,6 @@ main.cpp:216:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) cadaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~ -mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp -meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': -meep_wrap.cxx:29774:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] - arg1 = (meep::component const) scm_to_int(argv[0]); - ^ -meep_wrap.cxx:29777:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] - arg2 = (meep::component const) scm_to_int(argv[1]); - ^ -geom.cpp: In function 'boolean point_in_fixed_pobjectp(vector3, ctlio::geometric_object*)': -geom.cpp:320:7: warning: this statement may fall through [-Wimplicit-fallthrough=] - } - ^ -geom.cpp:322:3: note: here - case GEOM PRISM: - ^~~~ -geom.cpp: In function 'vector3 normal_to_fixed_object(vector3, ctlio::geometric_object)': -geom.cpp:481:7: warning: this statement may fall through [-Wimplicit-fallthrough=] - } // switch - ^ -geom.cpp:483:3: note: here - case GEOM PRISM: - ^~~~ -geom.cpp: In function 'int intersect_line_with_object(vector3, vector3, ctlio::geometric_object, double*)': -geom.cpp:909:8: warning: this statement may fall through [-Wimplicit-fallthrough=] - } - ^ -geom.cpp:912:3: note: here - default: - ^~~~~~~ -mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': @@ -1448,17 +1454,45 @@ ctl-io.cpp:1925:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +geom.cpp: In function 'boolean point_in_fixed_pobjectp(vector3, ctlio::geometric_object*)': +geom.cpp:320:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + } + ^ +geom.cpp:322:3: note: here + case GEOM PRISM: + ^~~~ +geom.cpp: In function 'vector3 normal_to_fixed_object(vector3, ctlio::geometric_object)': +geom.cpp:481:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + } // switch + ^ +geom.cpp:483:3: note: here + case GEOM PRISM: + ^~~~ +geom.cpp: In function 'int intersect_line_with_object(vector3, vector3, ctlio::geometric_object, double*)': +geom.cpp:909:8: warning: this statement may fall through [-Wimplicit-fallthrough=] + } + ^ +geom.cpp:912:3: note: here + default: + ^~~~~~~ +meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': +meep_wrap.cxx:29774:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] + arg1 = (meep::component const) scm_to_int(argv[0]); + ^ +meep_wrap.cxx:29777:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] + arg2 = (meep::component const) scm_to_int(argv[1]); + ^ +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' Making all in libmeepgeom make[3]: Entering directory '/build/meep-mpich2-1.7.0/libmeepgeom' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 meepgeom.cpp: In member function 'void meep_geom::geom_epsilon::eff_chi1inv_matrix(meep::component, meep_geom::symmetric_matrix*, const meep::volume&, double, int)': meepgeom.cpp:747:16: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] @@ -1514,7 +1548,7 @@ _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o libmeepgeom.la -rpath /usr/lib/arm-linux-gnueabihf meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o libmeepgeom.la -rpath /usr/lib/arm-linux-gnueabihf meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -Wl,-rpath -Wl,/build/meep-mpich2-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeepgeom.so.12" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so.12") libtool: link: (cd ".libs" && rm -f "libmeepgeom.so" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so") @@ -1522,13 +1556,13 @@ arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: arm-linux-gnueabihf-ranlib .libs/libmeepgeom.a libtool: link: ( cd ".libs" && rm -f "libmeepgeom.la" && ln -s "../libmeepgeom.la" "libmeepgeom.la" ) -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/bend-flux-ll bend-flux-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm make[3]: Leaving directory '/build/meep-mpich2-1.7.0/libmeepgeom' Making all in python make[3]: Entering directory '/build/meep-mpich2-1.7.0/python' swig -Wextra -I../src -I../libmeepgeom -I.. -outdir . -c++ -python -o meep-python.cpp ./meep.i -/bin/bash: git: command not found +/bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ @@ -1537,7 +1571,7 @@ fi make all-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/python' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o .libs/_meep_la-meep-python.o meep-python.cpp: In function 'PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:18161:103: warning: unused parameter 'varargs' [-Wunused-parameter] @@ -2041,7 +2075,7 @@ _M_realloc_insert(begin() + __n, std::move(__v)); ^~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-mpich2-1.7.0/src/.libs -Wl,-rpath -Wl,/build/meep-mpich2-1.7.0/libmeepgeom/.libs ../src/.libs/libmeep.so ../libmeepgeom/.libs/libmeepgeom.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.12" && ln -s "_meep.so.12.0.0" "_meep.so.12") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.12.0.0" "_meep.so") @@ -2090,65 +2124,65 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml make[4]: Entering directory '/build/meep-mpich2-1.7.0/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 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-L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 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-Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o three_d three_d.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/three_d three_d.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o two_dimensional.o two_dimensional.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o two_dimensional two_dimensional.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o two_dimensional two_dimensional.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/two_dimensional two_dimensional.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o 2D_convergence.o 2D_convergence.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o 2D_convergence 2D_convergence.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o 2D_convergence 2D_convergence.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/2D_convergence 2D_convergence.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5test.o h5test.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o h5test h5test.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o h5test h5test.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/h5test h5test.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o pml.o pml.cpp pml.cpp: In function 'int check_pmlcyl(double (*)(const meep::vec&))': pml.cpp:220:10: warning: variable 'prev_refl_const' set but not used [-Wunused-but-set-variable] double prev_refl_const = 0.0, refl_const = 0.0; ^~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o .libs/pml pml.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpich2-1.7.0/tests' make check-TESTS @@ -2215,7 +2249,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20000 RUNNING AT jtk1a += PID 2835 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2231,7 +2265,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20037 RUNNING AT jtk1a += PID 2870 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2247,7 +2281,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20073 RUNNING AT jtk1a += PID 2905 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2263,7 +2297,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20108 RUNNING AT jtk1a += PID 2940 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2279,7 +2313,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20145 RUNNING AT jtk1a += PID 2975 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2295,7 +2329,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20181 RUNNING AT jtk1a += PID 3010 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2311,7 +2345,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20216 RUNNING AT jtk1a += PID 3045 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2327,7 +2361,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20252 RUNNING AT jtk1a += PID 3080 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2343,7 +2377,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20287 RUNNING AT jtk1a += PID 3115 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2359,7 +2393,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20323 RUNNING AT jtk1a += PID 3150 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2375,7 +2409,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20358 RUNNING AT jtk1a += PID 3185 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2391,7 +2425,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20393 RUNNING AT jtk1a += PID 3220 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2407,7 +2441,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20429 RUNNING AT jtk1a += PID 3255 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2423,7 +2457,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20464 RUNNING AT jtk1a += PID 3290 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2439,7 +2473,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20500 RUNNING AT jtk1a += PID 3325 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2455,7 +2489,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20535 RUNNING AT jtk1a += PID 3360 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2471,7 +2505,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20585 RUNNING AT jtk1a += PID 3395 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2487,7 +2521,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20622 RUNNING AT jtk1a += PID 3430 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2503,7 +2537,7 @@ =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES -= PID 20657 RUNNING AT jtk1a += PID 3465 RUNNING AT i-capture-the-hostname = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES @@ -2531,7 +2565,7 @@ make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' make[5]: Entering directory '/build/meep-mpich2-1.7.0/src' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libmeep.so.12.0.0 /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmeep.so.12.0.0 libmeep.so.12 || { rm -f libmeep.so.12 && ln -s libmeep.so.12.0.0 libmeep.so.12; }; }) libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmeep.so.12.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.12.0.0 libmeep.so; }; }) @@ -2560,7 +2594,7 @@ make[4]: Entering directory '/build/meep-mpich2-1.7.0/scheme' make[5]: Entering directory '/build/meep-mpich2-1.7.0/scheme' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-mpich2-1.7.0/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/meep-mpich2-1.7.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/meep /build/meep-mpich2-1.7.0/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/share/meep' @@ -2572,9 +2606,9 @@ make[3]: Entering directory '/build/meep-mpich2-1.7.0/libmeepgeom' make[4]: Entering directory '/build/meep-mpich2-1.7.0/libmeepgeom' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'libmeepgeom.la' -libtool: install: (cd /build/meep-mpich2-1.7.0/libmeepgeom; /bin/bash "/build/meep-mpich2-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o libmeepgeom.la -rpath /usr/lib/arm-linux-gnueabihf meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-mpich2-1.7.0/debian/tmp) +libtool: install: (cd /build/meep-mpich2-1.7.0/libmeepgeom; /bin/sh "/build/meep-mpich2-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o libmeepgeom.la -rpath /usr/lib/arm-linux-gnueabihf meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-mpich2-1.7.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -L/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmeep -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libmeepgeom.so.12.0.0T /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so.12 || { rm -f libmeepgeom.so.12 && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so.12; }; }) @@ -2594,9 +2628,9 @@ make[4]: Entering directory '/build/meep-mpich2-1.7.0/python' make[5]: Entering directory '/build/meep-mpich2-1.7.0/python' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/meep-mpich2-1.7.0/python; /bin/bash "/build/meep-mpich2-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-mpich2-1.7.0/debian/tmp) +libtool: install: (cd /build/meep-mpich2-1.7.0/python; /bin/sh "/build/meep-mpich2-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-mpich2-1.7.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lmeep -lmeepgeom -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -lfftw3 -lgfortran -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/mpich -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.12.0.0T /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so.12 || { rm -f _meep.so.12 && ln -s _meep.so.12.0.0 _meep.so.12; }; }) @@ -2650,64 +2684,64 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol PyExc_OverflowError: it's probably a plugin +dpkg-shlibdeps: warning: symbol box_overlap_with_object used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol vector3_plus used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol create_geom_box_tree0 used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol dimensions used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol adaptive_integration used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geom_fix_objects0 used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol unit_vector3 used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geometry_lattice used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol default_material used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol geometry_center used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries +dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol PyObject_HasAttrString: it's probably a plugin dpkg-shlibdeps: warning: 112 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgsl.so.23 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgslcblas.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libatlas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libhdf5_mpich.so.103 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libharminv.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpichcxx.so.12 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpich.so.12 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libf77blas.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libhdf5_mpich.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libfftw3.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpichcxx.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libcblas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libf77blas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgsl.so.23 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgslcblas.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpich.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against liblapack.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgfortran.so.5 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libatlas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libf77blas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libmpichcxx.so.12 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) dpkg-shlibdeps: warning: debian/meep-mpich2/usr/bin/meep contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libfftw3.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libmpichcxx.so.12 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgc.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libmpich.so.12 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgsl.so.23 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libfftw3.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgslcblas.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libmpichcxx.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libhdf5_mpich.so.103 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgsl.so.23 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libharminv.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against liblapack.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgc.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: symbol geom_initialize used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol cvector3_equal used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol vector3_minus used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol vector3_plus used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol adaptive_integration used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol geom_box_tree_stats used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol vector3_equal used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol destroy_geom_box_tree used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol display_geometric_object_info used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol normal_to_fixed_object used by debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 found in none of the libraries -dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libmpichcxx.so.12 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libf77blas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/arm-linux-gnueabihf/libmeepgeom.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgfortran.so.5 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'python-meep-mpich2-dbgsym' in '../python-meep-mpich2-dbgsym_1.7.0-3_armhf.deb'. -dpkg-deb: building package 'libmeep-mpich2-12-dbgsym' in '../libmeep-mpich2-12-dbgsym_1.7.0-3_armhf.deb'. dpkg-deb: building package 'meep-mpich2' in '../meep-mpich2_1.7.0-3_armhf.deb'. -dpkg-deb: building package 'meep-mpich2-dbgsym' in '../meep-mpich2-dbgsym_1.7.0-3_armhf.deb'. dpkg-deb: building package 'libmeep-mpich2-dev' in '../libmeep-mpich2-dev_1.7.0-3_armhf.deb'. dpkg-deb: building package 'libmeep-mpich2-12' in '../libmeep-mpich2-12_1.7.0-3_armhf.deb'. +dpkg-deb: building package 'python-meep-mpich2-dbgsym' in '../python-meep-mpich2-dbgsym_1.7.0-3_armhf.deb'. +dpkg-deb: building package 'meep-mpich2-dbgsym' in '../meep-mpich2-dbgsym_1.7.0-3_armhf.deb'. +dpkg-deb: building package 'libmeep-mpich2-12-dbgsym' in '../libmeep-mpich2-12-dbgsym_1.7.0-3_armhf.deb'. dpkg-deb: building package 'python-meep-mpich2' in '../python-meep-mpich2_1.7.0-3_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep-mpich2_1.7.0-3_armhf.changes @@ -2715,12 +2749,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/25978/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25978/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/30121 and its subdirectories -I: Current time: Thu Aug 6 07:34:41 -12 2020 -I: pbuilder-time-stamp: 1596742481 +I: removing directory /srv/workspace/pbuilder/25978 and its subdirectories +I: Current time: Fri Aug 7 09:57:03 +14 2020 +I: pbuilder-time-stamp: 1596743823